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Menara Perkebunan
Published by Pusat Penelitian Kelapa Sawit
ISSN : 01259318     EISSN : 18583768     DOI : -
Core Subject : Agriculture,
Agriculture, Biological Sciences & Forestry
Menara Perkebunan as a communication medium for research in estate crops published articles covering original research result on the pre- and post-harvest biotechnology of estate crops. The contents of the articles should be directed for solving the problems of production and/or processing of estate crops of smallholder, private plantations and state-owned estates, based on the three dedications of plantation. Analyses of innovative research methods and techniques in biotechnology, which are important for advancing agricultural research. Critical scientific reviews of research result in agricultural and estate biotechnology.
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Articles 5 Documents
 1 
Search results for , issue "Vol 76, No 2: Desember 2008" : 5 Documents clear
Kloning dan karakterisasi gen penyandi inhibitor proteinase dari kulit buah kakao Cloning and characterization of gene encoding proteinase inhibitor of cacao pod wall Mayta Novaliza ISDA; Musliar KASIM; . MANSYURDIN; Tetty CHAIDAMSARI; Djoko SANTOSO
E-Journal Menara Perkebunan Vol 76, No 2: Desember 2008
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (335.457 KB) | DOI: 10.22302/iribb.jur.mp.v76i2.84

Abstract

Summary Attempts to increase cocoa production in Indonesia have been hinderred by attack of CPB (Conopomorpha cramerella). There has been no effective measures to control this pest leading to development of cacao planting materials which resistant to the pod borer. One of genes functioning in plant defense system against insect pests such as catepilar is Proteinase Inhibitor (PIN). This research aimed to isolate and characterize TcPIN gene of cacao pod wall. A clone of TcPIN was isolated with RT-PCR technique using total RNA of cacao pod wall and DNA primer designed based on the sequence Trypsin Inhibitor of cocoa bean accessible online. BlastX analysis of the sequence of the cDNA clone demonstrated that the ± 600 bp gene cloned with pGEM-T was PIN gene as indicated by highly homologous to Trypsin Inhibitor of Theobroma microcarpum resulted in 248 Score bits and E value 1 e-64. Two sequence alligment with the putative 21 kDa PIN  of cacao seed indicated a moderately high homology. Contrasting these two sequences however found some non identical amino acids implying some variations. Ringkasan Usaha peningkatan produksi kakao di Indonesia terkendala antara lain oleh adanya serangan hama PBK (Conopomorpha cramerella). Untuk menanggulangi serangan PBK tersebut perlu adanya satu cara pengendalian yang efektif dan efisien, sehingga dapat mendorong usaha pengembangan bahan tanam yang tahan PBK. Salah satu gen  membawa sifat ketahanan tanaman terhadap hama ulat adalah Proteinase Inhibitor (PIN). Penelitian ini bertujuan untuk mengisolasi dan mengkarakterisasi gen TcPIN dari kulit buah kakao. Klon cDNA TcPIN diisolasi dari kulit buah kakao dengan teknik RT-PCR meng-gunakan RNA total kulit buah kakao dan primer DNA yang dirancang atas dasar sekuen Inhibitor Tripsin biji kakao yang diakses lewat internet.  Hasil analisis BlastX dari sekuen klon cDNA menunjukkan  bahwa gen berukuran  ± 600 pb yang telah diklon dengan pGEM-T tersebut adalah PIN karena memiliki homologi yang tinggi terhadap 21 kDa trypsin inhibitor dari Theobroma microcarpum yang meng-hasilkan Skor 248 bits dengan Nilai E 1e-64. Penjajaran dua sekuen dengan PIN putatif 21 kDa yang berasal dari biji kakao menunjuk-kan tingkat homologi yang tinggi, dengan perbedaan nyata sehingga dapat terlihat bahwa keduanya tidak identik.
Peningkatan kemantapan agregat tanah mineral oleh bakteri penghasil eksopolisakarida Aggregate stability improvement of mineral soil by exopolysaccharide-producing bacteria Laksmita Prima SANTI; Ai DARIAH; Didiek Hadjar GOENADI
E-Journal Menara Perkebunan Vol 76, No 2: Desember 2008
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (217.254 KB) | DOI: 10.22302/iribb.jur.mp.v76i2.85

Abstract

Summary Pseudomonas fluorescens PG7II.1, Flavobacterium sp. PG7II.2, and  Pseudomonas diminuta PG7II.9 have a potential to produce exopolysaccharide which help the  formation and stabilization of soil aggregate. These bacteria have been isolated from the rhizosphere of Saccharum officinarum.  Exopolysaccharide production in ATCC 14 liquid medium with sucrose was higher than that obtained from glucose, lactose, and 4-hydroxyphenil acetic acid       (4-HAA) as a carbon sources. Producing of exopolysaccharide from these bacteria were 8.04 (P. fluorescens PG7II.1), 2.0 (Flavo-bacterium sp. PG7II.2) and 1.82 mg/mL (P. diminuta PG7II.9). Aggregate Stability Index (ASI) of mineral soil material was 114 when inoculated by these isolates after 60 days incubation period at ambient temperature. The ASI value of inoculated mineral soil material significantly different with uninoculated. The optimum of bacterial suspension to increase aggregate stability of mineral soil material was 12.5% (v/w) consisted of 109 CFU per mL.  Ringkasan          Pseudomonas fluorescens PG7II.1, Flavobacterium sp. PG7II.2, dan Pseudomonas diminuta PG7II.9, memiliki potensi dalam menghasilkan eksopolisakarida untuk pem-bentukan dan kemantapan agregat tanah. Ketiga bakteri tersebut diisolasi dari rhizosfer Saccharum officinarum. Sukrosa merupakan sumber karbon terbaik untuk produksi eksopolisakarida di dalam medium cair ATCC 14 apabila dibandingkan dengan glukosa, laktosa, dan 4-hydroxyphenil acetic acid  (4-HAA). Eksopolisakarida yang dihasilkan dari ketiga bakteri tersebut masing-masing 8,04 (P. fluorescens PG7II.1); 2,0 (Flavobacterium sp. PG7II.2) dan 1,82 mg/mL (P. diminuta PG7II.9). Inokulasi ketiga isolat tersebut ke dalam bahan tanah mineral memberikan indeks stabilitas agregat (ASI) sebesar 114 setelah 60 hari inkubasi pada suhu ruang. Nilai indeks ini berbeda secara nyata apabila dibandingkan dengan bahan tanah mineral tanpa inokulan. Jumlah suspensi bakteri yang diperlukan untuk meningkatkan nilai indeks stabilitas agregat di dalam bahan tanah mineral secara optimum ialah 12,5% (v/b), dengan jumlah populasi bakteri 109 CFU   per mL. 
Produksi dan kualitas jamur tiram (Pleurotus ostreatus) pada beberapa konsentrasi limbah sludge pabrik kertas Production and quality of oyster mushroom (Pleurotus ostreatus) on selected concentration of sludge of paper industry Happy WIDIASTUTI; . TRI-PANJI
E-Journal Menara Perkebunan Vol 76, No 2: Desember 2008
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (184.788 KB) | DOI: 10.22302/iribb.jur.mp.v76i2.86

Abstract

Summary An experiment has been conducted to study the effect of sludge concentration,  waste of paper industry using raw material of recycled paper, as media on oyster mushroom production and quality. Twelve treatment tested are combination of two oyster mushroom strains are oyster mushroom of Bogor (JTB) and oyster mushroom of Taiwan (JTT), three media composition (sawdust, sludge, and sawdust+ sludge (50/50, v/v), and two levels of supplement addition (with rice bran+gypsum+ lime and without) with 10 replications. The production of the  mushroom was conducted  in bag log capacity of 1 kg fresh weight (water content 50%). The result showed that sludge can be used as mixture of oyster mushroom production with the composition 50:50 v/v of sawdust and sludge. Since the higher number of contamination, addition of supplement reduce oyster mushroom production as well as biological efficiency, but increased protein content of fruiting body. The content of Cd, and Pb were below the permissible limits, Cu was higher than the limits but still in the range. The Fe content of mushroom fruit body was higher both in sawdust (147.92 – 149.56 ppm) and sawdust+sludge (295.82 – 335.12 ppm) as media. However, the uptake of Fe of JTT was less (49.08-59.64 ppm) compared to that of JTB (147.92-335.12 ppm).Ringkasan Penelitian dilakukan untuk mempelajari pengaruh konsentrasi sludge limbah pabrik kertas berbahan baku karton bekas sebagai medium terhadap produksi dan kualitas jamur tiram. Dua belas perlakuan yang diuji merupakan kombinasi dua galur jamur tiram, yaitu Jamur Tiram Bogor (JTB) dan Jamur Tiram Taiwan (JTT), tiga jenis komposisi medium (serbuk gergaji, sludge, dan sludge+ serbuk gergaji), dan dua tingkat suplemen (dengan dan tanpa) yang diulang 10 kali untuk masing-masing perlakuan. Produksi jamur tiram dilakukan menggunakan bag log  berkapasitas 1 kg basah (kadar air 50%). Hasil percobaan menunjukkan bahwa sludge dapat digunakan sebagai campuran serbuk gergaji dalam produksi jamur tiram dengan per-bandingan 50:50 (v/v). Pemberian suplemen menurunkan produksi jamur tiram demikian pula efisiensi biologi namun meningkatkan kadar protein tubuh buah. Di dalam tubuh buah JTB, kandungan logam Cd, dan Pb berada di bawah batas yang diijinkan, sedangkan kandungan Cu di atas ambang walaupun masih dalam kisaran. Kandungan  Fe dalam tubuh buah jamur relatif tinggi baik yang ditumbuhkan pada serbuk gergaji sebagai medium standar (147,92 - 149,56 ppm) maupun yang ditumbuhkan pada medium campuran sludge+serbuk gergaji (295,82 - 335,12 ppm). Serapan Fe tubuh buah JTT jauh lebih rendah (49,08- 59,64 ppm) dibandingkan dengan serapan Fe JTB (147,92-335,12 ppm).  
Deteksi metilasi DNA genom Elaeis guineensis Jacq hasil kultur jaringan dengan teknik Randomly Amplified Fingerprint (RAF) DNA dan Reverse Phase HPLC (RP-HPLC) Analysis DNA genom methylation of Elaeis guineensis Jacq from tissue culture by Randomly Amplified Fingerprint DNA (RAF) and Reverse Phase HPLC (RP-HPLC) Nurita TORUAN-MATHIUS; Nesti F SIANIPAR; G A WATTIMENA; Hajrial ASWIDINNOOR; Maggy THENAWIDJAYA-SUHARTONO; Gale GINTING
E-Journal Menara Perkebunan Vol 76, No 2: Desember 2008
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (323.682 KB) | DOI: 10.22302/iribb.jur.mp.v76i2.81

Abstract

Abstract Embryo somatic (ES) abnormalities of  oil palm were probably caused by numbers and location of  DNA genom cytosin methylation. Quantity of methylation could be determined  by Reverse phase HPLC (RP-HPLC) techniques, while location of DNA cytosin methylation was detected by Random Amplified Fingerprint DNA (RAF-DNA) technique. The objective of  this research was to determine numbers  and pattern of DNA cytosin methylation  of normal or abnormal ES and normal ortet as a standard.  DNA genomic of samples were cut by  HpaII and MspI enzymes at  CCGG site, and amplified by RAF. HpaII  cut at  mCCGG  sequences, but if  second C  were methylated  the sequences can not be cut by HpaII.While Msp1 will cut if internal of cytosine was methylated  (CmCGG). The results showed that AB16, AE11, AO12 and  AP12 primers could detect the changes of methylation site on normal ortet and abnormal ES cotyledone.  RP-HPLC analyses showed that DNA cytosin methylation content between ES globular and ES cotyledone, both normal and abnormal  and also normal plantlet and ortet were unsignificantly different. DNA methyl content was around   0.25 – 2.72 %. Internal and fully methylation was found on 124 – 457 bp. Abnormal ES  of MK638 clone showed the hipomethylation pattern. It was concluded that methylation cytosine content was very low and it seems that DNA methylation undirectly  affects on process of morphology abnormalities.  Abnormalities of ES globular and cotyledone might be caused by the change of  DNA genom sequences. Abstrak Abnormalitas pada embrio somatik (ES) tanaman kelapa sawit diduga disebabkan oleh kandungan serta lokasi terjadinya metilasi sitosin DNA genom. Kandungan metilasi dapat ditetapkan dengan teknik Reverse Phase HPLC (RP-HPLC), sedang lokasi terjadinya  metilasi sitosin DNA genom ES dapat dideteksi dengan teknik Random Amplified Fingerprint DNA (RAF-DNA). Tujuan penelitian ini adalah untuk menetapkan pola metilasi sitosin DNA genom ES kotiledon normal dan abnormal, sebagai pembanding adalah ortet yang normal.  DNA genom contoh dipotong dengan enzim HpaII dan MspI yang mengenali situs CCGG, selanjutnya diamplifikasi dengan RAF. Enzim HpaII memotong sekuen mCCGG tetapi jika C kedua mengalami metilasi sekuen tersebut tidak terpotong. Msp1 akan memotong apabila sitosin internal termetilasi (CmCGG). Hasil yang diperoleh menunjukkan bahwa terjadi perubahan  situs metilasi antara ortet  normal dan ES kotiledon abnormal. Perubahan situs metilasi sitosin dapat dibedakan dengan primer RAF, yaitu AB16, AE11, AO12 dan AP12.  Hasil analisis RP-HPLC menunjukkan bahwa perbedaan kandungan metilasi sitosin DNA ES globular maupun kotiledon masing-masing antara yang normal dan abnormal, serta antara planlet dan ortet normal sangat kecil. Kandungan metil sitosin berkisar antara 0,25 – 2,72 %. Tampak bahwa pada 124 - 457 pb terjadi metilasi internal, eksternal maupun metilasi penuh. Pada ES abnormal klon MK638 menunjukkan terjadi hipometilasi sitosin.  Perbedaan kandungan  metilasi sitosin yang sangat kecil diduga tidak berpengaruh langsung terhadap proses abnormalitas. Abnormalitas yang terjadi pada ES globular dan kotiledon kemungkinan akibat terjadinya perubahan sekuens DNA genom. 
Optimisasi dan pemurnian IAA yang dihasilkan Rhizobium sp. dalam medium serum lateks dengan suplementasi triptofan dari pupuk kandang Optimization and purification of IAA produced by Rhizobium sp. in latex serum media supplemented with tryptophan from chicken manure Irma KRESNAWATY; Syeda ANDANAWARIH; . SUHARYANTO; . TRI-PANJI
E-Journal Menara Perkebunan Vol 76, No 2: Desember 2008
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (474.428 KB) | DOI: 10.22302/iribb.jur.mp.v76i2.83

Abstract

Summary Concentrated latex effluent had not been economically utilized, consequently it had become source of environmental pollution and conflicts with surrounding community. Whereas, the concentrated latex effluent could be used as substrate for microbes growth media due to its high concentration of carbon and nitrogen. One of the economical benefits of growing Rhizobium sp. in this waste is the production of  indole acetic acid (IAA) that  can be used for plant promotion growth. The aims of this research were to get the optimal IAA production of Rhizobium sp. by optimizing its tryptophan supplementation through hydrolysis of chicken manure and to purify IAA produced using chromatographic method. The use of chicken manure directly caused the browning effect, therefore these experiments were carried out the variation of NaOH 2 N hydrolysis treatments to reduce the effect. Direct hydrolysis as the first media  was obtained by mixing latex serum and manure, and then this mixture was hydrolyzed. Meanwhile, separated hydrolysis was done by adding water to manure, being hydrolyzed, and divided to become second and third media. The second media  was made by mixing manure hydrolysate and latex serum directly, whereas in third media, hydrolisate was added with alum as coagulating agent. Rhizobium sp. was then inoculated to all media and incubated for 24, 48, and 72 hours in 27-30oC. IAA was analyzed by spectrophotometric method with Salkowsky reagent and Thin Layer Chromatography (TLC). IAA was then extracted with ethyl acetate and purified with silica gel column chromatography. The separated hydrolysis without coagulation (second media) produced the highest IAA concentration, that is 14.40 mg/mL, whereas IAA produced by direct hydrolysis (first media) was 14.13 mg/mL and 0.90 mg/mL for third media  during 48 hours. The fractionation result  for each mediums showed that the highest IAA distribution in first media  was the 12th fraction (38.70%), meanwhile in second media  was the 15th fraction (50.25%) and in the third  media was the 13th fraction (26.16%). Ringkasan Limbah lateks pekat saat ini belum di-manfaatkan secara ekonomis, bahkan menjadi sumber pencemaran lingkungan dan konflik dengan masyarakat sekitarnya. Padahal limbah lateks pekat dapat digunakan sebagai substrat pertumbuhan mikroba karena memiliki kandungan karbon dan nitrogen yang cukup tinggi.  Salah  satu  nilai  ekonomis yang dapat diperoleh dengan ditumbuhkannya Rhizobium sp. pada limbah tersebut, yaitu dihasilkannya asam indol asetat (indol acetic acid/IAA) yang dapat digunakan untuk memacu pertumbuhan tanaman. Penelitian ini bertujuan memperoleh produksi IAA optimal yang dihasilkan Rhizobium sp. dengan asupan triptofan dari hidrolisis pupuk kandang dan memurnikan IAA yang dihasilkan tersebut dengan metode kromatografi. Penggunaan pupuk kandang secara langsung menyebabkan efek pen-cokelatan, maka dilakukan variasi perlakuan hidrolisis dengan NaOH 2 N untuk mengurangi efek tersebut. Hidrolisis langsung sebagai medium pertama diperoleh dengan mencampur serum lateks dan pupuk kandang, sedangkan hidrolisis terpisah dilakukan dengan menambah pupuk kandang dengan air,  dan dibagi menjadi medium kedua dan ketiga. Medium kedua dibuat dengan cara  langsung mencampur hidrolisat dan serum lateks, sedangkan pada medium ketiga, hidrolisat diendapkan dengan alum sebagai bahan pengendap.  Kemudian ke dalam masing-masing medium diinokulasi  Rhizobium sp. dan diinkubasi selama 24 ,48, dan 72 jam pada suhu 27-30oC. Analisis IAA dilakukan secara spektrofotometri dengan metode Salkowski dan Kromatografi Lapis Tipis (KLT). IAA diekstraksi menggunakan etil asetat dan dimurnikan dengan kromatografi kolom silika gel. Hidrolisis terpisah tanpa pengendapan (medium kedua) menghasilkan IAA tertinggi, yaitu 14,40 mg/mL, sedangkan hidrolis langsung (medium pertama) menghasilkan IAA sebesar 14,13 mg/mL dan medium ketiga sebesar 0,90 mg/mL selama 48 jam. Hasil fraksinasi untuk masing-masing medium menunjukkan sebaran IAA tertinggi pada medium pertama berada pada fraksi ke-12 (38,70%), sedangkan pada medium kedua pada fraksi ke-15 (50,25%), dan pada medium ketiga ialah fraksi ke-13 (26,16%). 

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