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INDONESIA
Menara Perkebunan
ISSN : 01259318     EISSN : 18583768     DOI : -
Core Subject : Agriculture,
Menara Perkebunan as a communication medium for research in estate crops published articles covering original research result on the pre- and post-harvest biotechnology of estate crops. The contents of the articles should be directed for solving the problems of production and/or processing of estate crops of smallholder, private plantations and state-owned estates, based on the three dedications of plantation. Analyses of innovative research methods and techniques in biotechnology, which are important for advancing agricultural research. Critical scientific reviews of research result in agricultural and estate biotechnology.
Arjuna Subject : -
Articles 541 Documents
Isolasi fragmen gen LIPASE dari kapang Absidia corymbifera, Rhizopus oryzae dan Rhizopus oligosporus Isolation of LIPASE gene fragment from Absidia corymbifera, Rhizopus oryzae and Rhizopus oligosporus fungi Riza A. PUTRANTO; Asmini BUDIANI
E-Journal Menara Perkebunan Vol 77, No 1: Juni 2009
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (297.024 KB) | DOI: 10.22302/iribb.jur.mp.v77i1.112

Abstract

AbstractDiversification of oil palm products, suchas healthy oil, needs lipase sustainability as abiocatalist. Many attempts have beendeveloped to produce lipase, includingintensive exploration and screening of severalspecies of molds. Genetic engineering for overexpression of LIPASE gene in the selectedmold is considered to be the potentialapproach for efficient production of thisenzyme. This research was aimed to isolate theLIPASE gene fragment of Indonesianindigenous fungi, namely Absidia corymbifera,Rhizopus oryzae and R. oligosporus by meansof RT-PCR (Reverse Transcriptase PolymeraseChain Reaction) technique using heterologousprimers. The result showed that a cDNAfragment of 462 bp has been amplified andisolated from the three fungi with differentconcentration. The highest quantity was foundfrom A. corymbifera. The RT-PCR productsisolated from A. corymbifera was cloned,sequenced and analyzed for its homology to thesequence of LIPASE gene from other species.BLAST analysis showed that the DNA sequenceof the cloned RT-PCR product derived fromA. corymbifera was highly homologous withLIPASE gene from Rhizopus niveus.AbstraksDiversifikasi produk kelapa sawit, sepertiminyak sehat (healthy oil) memerlukanketersediaan lipase sebagai biokatalis. Berbagaiupaya untuk produksi lipase telah dikembang-kan, termasuk eksplorasi dan skrining terhadapbeberapa spesies kapang secara intensif.Rekayasa genetika untuk mengoverekspresi-kan gen LIPASE pada kapang hasil skriningtersebut dipandang merupakan satu pendekatanpotensial untuk produksi enzim ini secaraefisien. Penelitian ini bertujuan untukmengisolasi fragmen gen LIPASE dari tigakapang indigenous Indonesia, yaituA. corymbifera, R. oryzae dan R. oligosporus,menggunakan teknik RT-PCR (ReverseTranscriptase Polymerase Chain Reaction).Hasil penelitian menunjukkan bahwa fragmencDNA sepanjang 462 bp dari ketiga kapangtelah diisolasi, masing-masing dengankuantitas yang berbeda. Hasil tertinggidiperoleh dari kapang A. corymbifera. ProdukRT-PCR dari A. corymbifera diklon, disekuenkemudian dianalisis homologinya dengansekuen gen LIPASE dari spesies lain. AnalisisBLAST menunjukkan bahwa sekuen DNA dariproduk RT-PCR terklon yang berasal dariA. corymbifera memiliki homologi tinggidengan gen LIPASE dari Rhizopus niveus.
Penggunaan enzim protease pada pengolahan lateks pekat DPNR sebagai bahan pembuatan sphygmomanometer Use of protease on the processing of concentrated latex DPNR as material for sphygmomanometer manufacturing . SISWANTO; . SUHARYANTO; Yoharmus SYAMSU
E-Journal Menara Perkebunan Vol 77, No 2: Desember 2009
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (89.564 KB) | DOI: 10.22302/iribb.jur.mp.v77i2.82

Abstract

AbstractIn order to increase competitiveness in the international market especially in USA, the domestic industrial manufactures of latex dipping products have to meet the FDA requirement for protein standard that is 150 g protein/g. Use of cheap protease from an effective local sources will support the production of concentrated latex with low protein so that the end product will meet FDA prerequisite of standard protein. Local source of proteases from Bacillus sp. isolated from latex coagula serum (LCS), papain and bromeline were examinated their proteolytic activity using casein and casein mixed with LCS (1:1) as substrate. The best protease source will be applied to produce deproteinized natural rubber (DPNR) of concentrated latex, and furthermore used as raw material in producing sphygmomanometer at commercial scale. The objective of this research is to determine the best protease source and condition of optimum activity and its effectiveness for producing DPNR of concentrated latex as raw material for sphygmomanometer production. The result showed that Bacillus sp. K3 is the best isolate for protease producer with protease activity of 0.438 U/mL under room temperature (28-30oC) for three days. Of three sources of protease tested, papain was the most active one when casein was used as substrate. The used of LCS as substrate was not efficient because of the presence of protease inhibitor which could not be removed by heating at 100C for five minutes. The proteolytic activity of papain was optimum at room temperature 37C and pH 7.7-11 i.e achieved 0.6-0.7 U/mL. Sphygmomanometers component produced by concentrated latex non DPNR containing 0,27-0.31% total N and 445-710 g extractable protein/g, whereas sphygmo-manometers component produced by latex DPNR containing 0.18-0.28% total N and 79-103 extractable protein thus pass its protein content prerequisite of FDA (<150 g /g). Sphygmo-manometers component produced by con-centrated latex DPNR have physical properties such as tensile strength, modulus 300% and elongation at break better than conventional concentrated latex.AbstrakUntuk meningkatkan daya saing di pasar internasional khususnya Amerika Serikat, barang celup lateks alam produksi dalam negeri harus memenuhi standar protein yang ditetapkan oleh FDA yaitu 150 g protein/g. Penggunaan enzim protease dari sumber lokal yang murah dan efektif akan membantu dalam pembuatan lateks pekat rendah protein sehingga produk yang dihasilkan memenuhi standar protein yang disyaratkan FDA. Sumber enzim protease lokaldari isolat Bacillus sp. yang diisolasi dari serum bekuan lateks (SBL), papain dan bromelin diuji aktivitas proteo-litiknya dengan substrat kasein dan campuran kasein dan SBL (1:1). Sumber enzim protease terbaik digunakan untuk produksi lateks pekat deproteinized natural rubber (DPNR) dan selanjutnya lateks tersebut digunakan untuk percobaan produksi komponen sphygmomanometer skala komersial. Penelitian bertujuan menetapkan sumber protease terbaik dan kondisi optimum aktivitasnya untuk pembuatan lateks pekat DPNR dan komponen sphygmomanometer. Hasil penelitian menunjukkan bahwa Bacillus sp. K3 adalah isolat terbaik dalam menghasilkan enzim protease yaitu mencapai 0,438 U/mL pada inkubasi suhu ruang (28-30oC) selama tiga hari. Dari ketiga sumber protease yang diuji, enzim papain menujukkan aktivitas terbaik ketika diuji dengan substrat kasein. Penggunaan subtrat SBL kurang sesuai untuk produksi protease karena adanya inhibit orprotease yang tidak bisa dihilangkan dengan cara pemanasan pada suhu 100C selama lima menit. Aktivitas enzim papain optimum pada suhu 37C dan antara pH 7,7-11, yaitu mencapai 0,6- 0,7 U/mL. Komponen sphygmomanometer konvensional yang dibuat dengan bahan baku lateks pekat non DPNR memiliki kadar N total 0,27-0,31% dan kadar protein terekstrak 445- 710 g/g, sedangkan komponen sphygmomanometer yang diproduksi dengan lateks pekat DPNR memiliki kadar N total 0,18-0,28% dan protein terekstrak 79-103 g/g sehingga memenuhi ambang batas yang ditetapkan oleh FDA yaitu <150 μg/g. Sifat fisika seperti tegangan putus, modulus 300%, dan perpanjangan putus komponen sphygmomanometer yang dibuat dari lateks pekat DPNR lebih baik dari pada lateks pekat non DPNR.
Transformasi kopi robusta (Coffea canephora) dengan gen kitinase melalui Agrobagterium tumefaciens LBA4404 Transformation of robusta coffee (Coffea canephora) with chitinase gene mediated by Agrobacterium tumefaciens LBA4404 . SISWANTO; Fetrina OKTAVIA; Asmini BUDIANI; . , SUDARSONO; . PRIYONO; Surip MAWARDI
E-Journal Menara Perkebunan Vol 71, No 2: Desember 2003
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (1075.003 KB) | DOI: 10.22302/iribb.jur.mp.v71i2.162

Abstract

SummaryGenetic engineering of robusta coffee forresistance to pathogenic fungi is considered to beone of the potential approaches to overcome theproblem at robusta coffee plantation caused bypathogenic fungi. This research was aimed tointroduce chitinase (CHI) gene into embryogeniccalli of robusta coffee and regenerate theplantlets. Embryogenic calli were co-cultivatedwith Agrobacterium tumefaciens LBA4404harboring pCAMBIA1301 which containschitinase gene under 35S promoter. In thisresearch four concentrations (0, 50, 100 and150 mg/L) of acetosyringone (AC) were used inthe co-cultivation medium. Selection fortransformed calli was conducted by graduallyincreasing the concentration of hygromicin from5 to 25 mg/L. Somatic embryo (SE) was inducedfrom callus on the medium containing acombination of BAP 5 mg/L and IAA (0, 0.25 or0.50 mg/L). Integration CHI in plant genome wasexamined by GUS assay and PCR. The resultrevealed that among the four AC concentrationstested, 100 mg/L gave the highest percentage ofcalli growing on the selection medium (42.5%).BAP concentration of 5 mg/L alone was the mosteffective for inducing of SE from transformedcalli with the highest percentage of 43.1% andaverage number SE of 8.8 ± 3. The strongestGUS expression on the calli at 3 days aftertransformation and the calli grown on selectionmedium containing 150 mg/L AC, which were56.5% and 40% respectivelly. PCR analysisshowed that 7 out of 12 plantlets tested,contained CHI gene. From this research 28transgenic plantlets of robusta coffee wereobtainedRingkasanRekayasa genetika untuk merakit tanamankopi robusta tahan jamur pathogen dipandangmerupakan salah satu pendekatan alternatif yangpotensial untuk mengatasi masalah padaperkebunan kopi robusta akibat serangan jamurpatogen. Penelitian ini bertujuan untuk meng-introduksikan gen kitinase (CHI) ke dalam kalusembriogenik kopi robusta dan regenerasinyamenjadi planlet, sebagai upaya untuk merakittanaman kopi robusta tahan serangan jamur.Kalus embriogenik diko-kultivasi denganAgrobacterium tumefaciens LBA4404 pembawapCAMBIA1301 yang mengandung gen kitinasedi bawah kontrol promotor 35S. Pada percobaanini, empat konsentrasi asetosiringon (AS) (0, 50,100 dan 150 mg/L) digunakan dalam medium ko-kultivasi. Seleksi kalus hasil transformasidilakukan dengan peningkatan konsentrasi higro-misin secara bertahap dari 5 mg/L sampai25 mg/L. ES diinduksi dari kalus pada mediumyang mengandung BAP 5 mg/L dan IAA (0; 0,25dan 0,50 mg/L). Integrasi gen CHI ke dalamgenom tanaman dianalisis melalui uji GUS danPCR. Hasil penelitian menunjukkan bahwa darikeempat konsentrasi AS yang diuji, AS 100 mg/Lternyata menghasilkan persentase tertinggi kalusyang tumbuh pada medium seleksi (42,5%).Konsentrasi BAP 5 mg/L tanpa penambahan IAAefektif menginduksi ES dari kalus hasiltransformasi dengan persentase tertinggi 43,1%dan rata-rata jumlah ES 8,8±3. Ekspresi GUStertinggi dideteksi pada kalus tiga hari setelahtransformasi dan kalus yang tumbuh di mediumseleksi yang mengandung AS 150 mg/L,masing-masing 56,5% dan 40,0 %. Analisis PCRmenunjukkan bahwa 7 planlet dari 12 planletyang diuji, membawa gen CHI. Dari penelitianini dihasilkan 28 planlet kopi robusta transgenik.
Kloning cDNA lengkap penyandi ACCase subunit biotin carboxylase dari mesokarp kelapa sawit (Elaeis guineensis Jacq.) Cloning of full length cDNA encoding ACCase subunit biotin carboxylase from mesocarp of oil palm (Elaeis guineensis Jacq.) Asmini BUDIANI; Antonius SUWANTO; Hajrial ASWIDINNOO; Djoko SANTOSO; Basil J NIKOLAU
E-Journal Menara Perkebunan Vol 81, No 2: Desember 2013
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (459.363 KB) | DOI: 10.22302/iribb.jur.mp.v81i2.43

Abstract

AbstractAcetyl-CoA Carboxylase (ACCase) is considered to beone of the key enzymes in palm oil biosynthesis. Availabilityof genes encoding this enzyme would give some advantagesin the molecular breeding of oil palm. Over expression ofthe genes in the oil palm mesocarp might increase the oilproduction in this tissue. On the other hand, downregulating of ACCase could divert the central metaboliteAcetyl-CoA to other product such as PHB (Polyhydroxy-butyrate), one of the known biodegradable plastic. Thispaper reported the work of cloning of the full length codingsequence of biotin carboxylase (BC), one subunit of theACCase. Based on the DNA sequence of the BC conservedregion that had cloned previously, primers pairs weredesigned to amplify 5’- and 3’- cDNA ends of BC usingRACE-PCR. The RACE products of 5’- and 3’- cDNA endsof BC were cloned into E.coli, and the DNAs weresequenced and analysed. The full cDNA of BC was obtainedby reisolation of the cloned 5’- and 3’- cDNA ends followedby digestion using KpnI, ligation into pGEM-T vector andcloning into E.coli. Colony PCR was carried out to confirmthat the target gene has been cloned. The recombinantplasmid containing full cDNA of BC was then isolated forDNA sequencing. The results showed that the 5’-BC (1367bp), 3’- BC (1032 bp), and the full length cDNA encodingBC (2182 bp) had been successfully cloned, and the DNAsequence had been confirmed as gene encoding ACCasesubunit biotin carboxylase.AbstrakAcetyl-CoA Carboxylase (ACCase) merupakan salahsatu enzim kunci dalam biosintesis minyak sawit. Keter-sediaan gen penyandi enzim ini sangat berguna dalampemuliaan kelapa sawit secara molekuler. Over-ekspresi genpenyandi ACCase pada mesokarp dapat meningkatkan pro-duksi minyak pada jaringan tersebut. Sebaliknya ekspresiACCase dapat ditekan melalui mekanisme down regulation sehingga metabolit central Acetyl-CoA dapat diarahkanuntuk menghasilkan produk lain seperti PHB (polyhydro-xybutyrate), salah satu jenis biodegradable plastik yangtelah banyak dikenal. Penelitian ini bertujuan untukmengklon cDNA lengkap penyandi ACCase subunit biotincarboxylase (BC) dari mesokarp kelapa sawit. Berdasarkansekuen DNA daerah konservatif BC yang telah diklon darimesokarp kelapa sawit pada penelitian sebelumnya, duapasang primer dirancang untuk mengamplifikasi daerahujung 5’- dan 3’- cDNA BC dengan RACE-PCR. Produk5’-RACE dan 3’-RACE diklon dan disekuen. cDNAlengkap penyandi BC diperoleh dengan jalan mengisolasikembali fragmen 5’- dan 3’- cDNA terklon, dilanjutkandengan digesti menggunakan enzim restriksi KpnI, ligasikedua fragmen ke vektor kloning pGEM-T, dan introduksike dalam E. coli. Setelah dilakukan PCR koloni untukmenguji keberhasilan kloning, plasmid rekombinan yangmengandung cDNA lengkap dari BC diisolasi untuk analisissekuen DNA. Dari penelitian ini fragmen cDNA 5’-BC(1367 pb) dan 3’- BC (1032 pb), serta cDNA lengkappenyandi BC berukuran 2182 pb telah diperoleh dan diklondalam E. coli. Analisis sekuen DNA mengkonfirmasi bahwacDNA terklon adalah benar gen penyandi ACCase subunitbiotin carboxylase.
Pengaruh TDZ terhadap induksi embrio somatik sagu (Metroxylon sagu Rottb.) pada tiga metode kultur berbeda (Effect of TDZ on the somatic embryo induction of sago palm (Metroxylon sagu Rottb.) in three different culture methods) Imron Riyadi; Darda EFENDI; Bambang S PURWOKO; Djoko SANTOSO
E-Journal Menara Perkebunan Vol 86, No 1 (2018): April, 2018
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (890.376 KB) | DOI: 10.22302/iribb.jur.mp.v1i1.258

Abstract

AbstractA right combination of cytokinin is able to support the process of callus differentiation to somatic embryo formation in plant somatic embryogenesis. Liquid culture application could increase the efficiency of in vitro culture process on plants. This research aimed to determine the best concentration of TDZ combined with kinetin for callus differentiation to  somatic embryo of sago palm on three culture methods. Plant material used was embryogenic callus derived from tips meristem culture from sucker of Alitir sago palm. Callus was cultured on modified MS media added with: 0.0, 0.1, 0.5 and 1.0 mg/L TDZ combined with 0.5 mg/L kinetin for 12 weeks with subcultures every 6 weeks. Three culture methods used were suspension, temporary immersion system (TIS), and solid media. There were 12 treatments with 4 replicates. The results showed that the highest number of somatic embryos was achieved on TIS culture with 1.0 mg/L TDZ and 0.5 mg/L kinetin in 6 weeks (167.3 embryos/flask) and 12 weeks (389.2 embryos/flask) with its fresh weight of 18.4 g and 29.1 g, respectively. The highset survival rate in final culture (12 weeks) was achieved on TIS culture with 1.0 mg/L TDZ and 0.5 mg/L kinetin (100%). The shortest time for somatic embryos expression was achieved on TIS culture with 1.0 mg/L TDZ and 0.5 mg/L kinetin in two weeks after culture. Histological analysis of early-stage somatic embryos showed the presence of dense and compact cellular arrangements which formed growth spot axis for shoot or SAM (shoot apical meristem) and root or RAM (root apical meristem) that connected each other. [Key words: culture method, embryogenic callus, Metroxylon sagu Rottb., kinetin, sago palm, TDZ]   AbstrakAplikasi kombinasi sitokinin yang tepat dapat mendorong proses diferensiasi kalus membentuk embrio somatik pada proses embriogenesis somatik tanaman. Penggunaan metode kultur cair dapat meningkatkan efisiensi proses kultur in vitro tanaman. Penelitian ini bertujuan untuk menentukan konsentrasi TDZ terbaik dikombinasikan dengan kinetin dalam proses diferensiasi kalus membentuk embrio somatik tanaman sagu pada tiga metode kultur. Bahan tanam penelitian  berupa kalus embriogenik tanaman sagu asal kultur meristem pucuk dari anakan sagu jenis Alitir. Kalus dikulturkan pada media modifikasi dengan penambahan  TDZ dengan konsentrasi 0,1; 0,5; dan 1,0 mg/L dikombinasikan dengan kinetin 0,5 mg/L selama 12 minggu yang disubkultur pada umur 6 minggu. Metode kultur yang digunakan terdiri atas tiga macam yaitu: kultur suspensi, sistem perendaman sesaat (SPS) dan media padat. Perlakuan terdiri atas 12 kombinasi perlakuan dengan empat ulangan. Hasil penelitian menunjukkan bahwa rerata jumlah embrio somatik tertinggi dicapai pada perlakuan metode kultur SPS dengan TDZ 1,0 mg/L baik pada umur kultur 6 minggu (167,3 buah) maupun umur 12 minggu (389,2 buah). Rerata bobot segar tertinggi juga diperoleh pada perlakuan metode kultur SPS dengan TDZ 1,0 mg/L  pada umur kultur 6 minggu (18,4 g) dan  12 minggu (29,1 g). Rerata daya hidup kultur akhir (12 minggu) tertinggi  sebesar 100% diperoleh pada perlakuan SPS. Induksi embrio somatik  tercepat yakni setelah  dua minggu diperoleh pada  metode kultur SPS dengan TDZ 1,0 mg/L dikombinasikan dengan kinetin 0,5 mg/L. Analisis histologi embrio somatik stadium awal  menunjukkan adanya susunan sel yang rapat dan kompak yang menyusun semacam poros atau berkas titik tumbuh tunas atau SAM (shoot apical meristem) maupun akar atau RAM (root apical mersitem) yang saling terhubung.[Kata kunci: kalus embriogenik, metode kultur, kinetin, TDZ, sagu, Metroxylon sagu]
Keragaman genetik klon-klon karet (Hevea brasiliensis Muell. Arg) yang resisten dan rentan terhadap Corynespora casiicola berdasarkan penanda RAPD dan AFLP Genetic variation of rubber ( Hevea brasiliensis Muell. Arg) clones resistance and susceptible to Corynespora cassiicola using RAPD and AFLP markers Nurita TORUAN-MATHIUS; Z LALU; . SOEDARSONO; Hajrial ASWIDINNOOR
E-Journal Menara Perkebunan Vol 70, No 2: Desember 2002
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (260.98 KB) | DOI: 10.22302/iribb.jur.mp.v70i2.127

Abstract

SummaryCorynespora leaf fall disease (CFLD) caused by the fungus Corynespora casiicola is one of the most important diseases of Hevea brasiliensis.CFLD was reported to cause serious damage on rubber productivity, and the disease has became more apparent in the recent years. The objectives of this study were (i) to analyze genetic similarities among several rubber clones resistance and susceptible to CFLD based on RAPD and AFLP markers, (ii) to compare the effectiveness of RAPD and AFLP markers. DNA genomic was extracted from young leaves of RRIM600, GT1, PB260, RRIC100, BPM1 (belongs to resistance group), PPN2058, PPN2444, and PPN2447 (belongs to susceptible group). Data were analyzed with NTSYS-pc program version 2.10, and a dendogram was created by cluster analysis using the unweighted pair group method on the basis of arithmetic averages (UPGMA). The results show that marker index AFLP (3.57) is higher than RAPD (1.02), it means that AFLP is more effective compared to RAPD. The average of genetic similarity AFLP (0.63) lower than RAPD (0.67) it means that AFLP is more discriminative than RAPD. Dendogram based on AFLP and RAPD were the best with at 0.65 level of genetic similarity cluster divided into two cluster A and B. Cluster A with a sub group A1 consisted of RRIC100, PPN2058 and PPN244 are belongs to resistance group), and sub group A2 consisted of (RRIM600, GT1, BPM1 and PB 260 are belongs to susceptible group), while cluster B only PPN2447 is belong to susceptible group. AFLP analysis show that one AFLP band of 110 bp resulting from PCR amplification using E-ACA/M-CAG (E-ACA/M-CAG110) primer pairs present in resistance clones, but absent in the susceptible clones. Meanwhile, application of 50 random primers decamer in RAPD analysis did not showed the specific band for either one of the group. It is concluded that AFLP marker analysis using EACA/M-CAG primer pair have a potential to differentiate resistance and the susceptible rubber clones to Corynespora. For the confirmation of the results more resistance and susceptible clones are needed for further test. RingkasanPenyakit gugur daun Corynespora (PDGC) yang disebabkan oleh patogen Corynespora asiicola, merupakan salah satu penyakit penting pada tanaman karet (Hevea brasiliensis). PGDC menyebabkan penurunan yang cukup serius terhadap produktivitas tanaman karet. Tujuan penelitian ini adalah untuk (i) mengidentifikasi kesamaan genetik antar beberapa klon yang tergolong tahan dan rentan dengan marka RAPD dan AFLP, dan (ii) mempelajari efektivitas kedua marka tersebut. DNA genomik diekstraksi dari daun muda klon RRIM600, GT1, PB260, BPM1, RRIC100 (tergolong resisten), PPN2058, PPN2444, dan PPN2447 (tergolong rentan ). Data dianalisis dengan NTSYS-pc program versi 2.10. Dendogram dibuat dengan analisis pengelompokan menurut metode Unweighted Pair Group berbasis Arithmetic Avarages (UPGMA). Hasil yang diperoleh menunjukkan bahwa marka indeks AFLP (3,57) lebih tinggi daripada RAPD (1,02), sehingga AFLP lebih efektif dibandingkan dengan RAPD. Rata-rata perkiraan kesamaan genetik AFLP (0,63) sedikit lebih rendah dari RAPD (0,67) sehingga AFLP relatif lebih diskriminatif daripada RAPD. Dendogram berdasarkan integrasi AFLP dan RAPD adalah yang paling baik, dimana pada rata-rata perkiraan kesamaan genetik (0,65) terbentuk dua kelompok yaitu A dan B. Kelompok A terdiri atas sub sub kelompok A1 yang beranggotakan (RRIC100, PPN2058 dan PPN244 yang tergolong resisten), dan sub group A2 yang beranggotakan (RRIM600, GT1, BPM1 dan PB 260 yang tergolong rentan) Sedang kelompok B beranggotakan hanya PN2447 yang tergolong rentan. Analisis AFLP menghasilkan satu pita AFLP dengan menggunakan pasangan primer EACA/M-CG (E-ACA/M-CAG110 ) secara konsisten diperoleh dari klon karet yang resisten, namun tidak ditemukan pada klon yang rentan. Sementara itu, aplikasi 50 primer acak dekamer dalam analisis RAPD tidak menghasilkan pita spesifik untuk kedua kelompok yang diuji. Disimpulkan bahwa analisis AFLP menggunakan pasangan primer EACA/M-CAG berpotensi untuk membedakan klon karet yang resisten dan rentan terhadap Corynespora. Untuk mengkorfirmasi hasil yang diperoleh, perlu dilakukan pengujian terhadap klon-klon yang resisten dalam jumlah yang lebih banyak
Keefektifan beberapa teknik pengendalian untuk menekan intensitas penyakit busuk buah (Phytophthora palmivora) di lapang Several technique to control the intensity of cocoa pod rot disease (Pytophthora palmivora) in the field Abdul WAHAB; Muhammad TAUFIK; La Ode Santiaji BANDE; Irma KRESNAWATY
E-Journal Menara Perkebunan Vol 83, No 2: Desember 2015
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (109.95 KB) | DOI: 10.22302/iribb.jur.mp.v83i2.3

Abstract

AbstractVarious factors causing the decreasing in the cocoa  production, and one of them is the infection of cocoa pod disease (CPD) caused by the pathogen of  Phytophthora palmivora. Plastic covered and coating with biokaolin can be used as techniques for the prevention of the diseases. The aim of  the research was to evaluate several techniques to control cocoa pod disease in order to reduce disease incidence, disease severity and yield loss of 100 seeds cocoa. This research was conducted in the village of Tokai, District of Poli-Polia, East Kolaka Southeast Sulawesi, from April to August 2013. The research was conducted according completely Randomized Block Design (RBD) with five treatments and four groups in order to obtain 20 experimental units. Each experimental unit consisted of  20 trees which each has five fruits so in total each unit consist of 100 fruit samples. The treatments tested were as follows; control (M0), biokaolin application every two weeks (M1), biokaolin application every four weeks (M2), plastic covered (M3), and mankozeb fungicide application every two weeks (M4). Variables observed in this study were the incidence of disease, severity of disease and yield loss was calculated by weighing the dry weight of 100 seeds. The results showed that the application of biokaolin every two weeks was more  effective to reduce disease incidence (26.12%) and disease severity (11.04%) while the average weight of the highest dry bean yield loss was on category of severe infection that is 74.96% with the lowest dry weight is 26.6 g in 100 seeds.  Abstrak   Berbagai faktor menjadi penyebab turunnya produksi buah kakao, salah satunya adanya infeksi penyakit busuk buah kakao (BBK) yang disebabkan oleh pathogen  Phytophthora palmivora. Teknik yang dapat dikembangkan untuk penanggulangan penyakit antara lain teknik penyelubungan dan pelapisan dengan biokaolin. Penelitian ini  ber-tujuan untuk mengevaluasi berbagai teknik pengendalian penyakit busuk buah kakao yang efektif menekan kejadian penyakit, keparahan penyakit dan besarnya kehilangan hasil berat 100 biji kering. Penelitian dilaksanakan di Desa Tokai, Kecamatan Poli-Polia, Kabupaten Kolaka Timur, Sulawesi Tenggara pada bulan April sampai Agustus 2013. Metode yang digunakan berdasar-kan Rancangan Acak Kelompok (RAK) dengan lima perlakuan dalam empat kelompok sehingga diperoleh 20 unit percobaan.  Setiap unit percobaan terdiri dari 20 pohon, dalam satu pohon terdiri dari lima sampel sehingga dalam 1 unit terdiri dari 100 sampel.  Perlakuan yang dicobakan adalah sebagai berikut; tanpa penyemprotan/penyelubungan (kontrol)  (M0), penyemprotan dengan biokaolin setiap dua minggu (M1), penyemprotan dengan biokaolin setiap empat minggu (M2), penyelubung-an dengan kantong plastik (M3), penyemprotan dengan fungisida mankozeb setiap dua minggu (M4). Parameter yang diamati  adalah kejadian penyakit, keparahan penyakit dan besarnya kehilangan hasil dihitung dengan menimbang berat 100 biji kering. Hasil penelitian menunjukkan bahwa teknik pengendalian penyakit busuk buah dengan aplikasi biokaolin setiap dua minggu rata-rata lebih efektif dalam menekan kejadian   penyakit yaitu (26,12%)  dan  keparahan  penyakit  (11,04%), sedangkan rata-rata besarnya kehilanganhasil berat biji kering tertinggi terlihat pada kategori infeksi berat yaitu 74,96%  dengan berat kering terendah yaitu 26,6 g dalam100 biji.
Modifikasi sistem kultur in vitro untuk meningkatkan vigor planlet stevia (Stevia rebaudiana Bert.) [Modification of in vitro culture system to increase the vigor of stevia (Stevia rebaudiana Bert.) plantlets] Rizka Tamania SAPTARI; . SUMARYONO
E-Journal Menara Perkebunan Vol 84, No 2 (2016): Desember 2016
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (277.96 KB) | DOI: 10.22302/iribb.jur.mp.v84i2.211

Abstract

 Stevia (Stevia rebaudiana Bert.), a sweetener plant, has been mass propagated by tissue culture technique. Optimal conditions to increase vigor of stevia plantlets are needed to support the sustainability of in vitro plantlet stocks and increase plantlet survival rate during acclimatization. The aim of this research was to investigate the effect of different media, culture vessel sizes, and vessel closure types on the vigor of stevia plantlets. The plant material was derived from apical shoot cuttings of sterile stevia plantlets grown on WP medium without growth regulator. Several treatments used in this study were solid or double layer media; short or tall culture vessel; and polypropile screw cap or plastic film closures.  Growth of plantlets was determined after 3 weeks of culture. Temperature and light intensity inside the vessels were also observed. The results showed that the best treatment to increase the vigor of stevia plantlets was a double-layer medium in a tall culture vessel (diameter 7 cm and height 11 cm) with either screw cap or plastic film. It was exhibited by significantly bigger stem diameter, more and bigger leaves, longer roots, and higher biomass fresh weight than those of other treatments. Higher temperature was observed on tall culture vessel, whereas all treatments did not significantly affect light intensity inside the vessels.[Keywords: stevia, plantlet vigor, double-layer medium, culture vessel size, vessel closure]AbstrakStevia (Stevia rebaudiana Bert.), tanaman pemanis, telah diperbanyak melalui teknologi kultur jaringan. Kondisi kultur optimal untuk meningkatkan vigor planlet stevia masih diperlukan untuk mendukung keberlanjutan tanaman stock in vitro dan untuk meningkatkan daya hidup planlet ketika diaklimatisasi. Penelitian yang dilakukan bertujuan untuk menentukan pengaruh penggunaan jenis media, ukuran botol kultur, dan jenis penutup botol yang berbeda terhadap vigor planlet stevia. Material tanaman yang digunakan didapat dari potongan tunas apikal plantlet stevia steril yang ditumbuhkan pada media WP tanpa zat pengatur tumbuh. Perlakuan jenis media terdiri atas media padat dan media dua-lapis (double-layer), ukuran botol pendek dan tinggi, serta jenis tutup ulir berbahan polipropilen dan lembaran plastik transparan. Pengamatan pertumbuhan planlet dilakukan setelah 3 minggu, juga dilakukan pengamatan terhadap suhu dan intensitas cahaya di dalam botol kultur. Hasil penelitian memperlihatkan bahwa perlakuan terbaik untuk meningkatkan vigor planlet stevia adalah dengan menggunakan media dua-lapis dalam botol kultur (diameter 7 cm, dan tinggi 11 cm), baik dengan tutup ulir maupun plastik. Hal ini ditunjukkan dari diameter batang lebih besar, daun lebih banyak dan besar, akar lebih panjang, serta bobot segar biomassa lebih tinggi dibandingkan dengan perlakuan lainnya. Suhu lebih tinggi terukur pada perlakuan botol tinggi, sedangkan semua perlakuan tidak mempengaruhi secara nyata intensitas cahaya di dalam botol kultur.[Kata kunci: stevia, vigor, media dua-lapis, ukuran botol kultur, tutup botol]
Pemanfaatan bio-char sebagai pembawa mikroba untuk pemantap agregat tanah Ultisol dari Taman Bogo-Lampung The use of bio-char as bacterial carrier for aggregate stabilization in Ultisol Soil from Taman Bogo-Lampung Laksmita Prima SANTI; Didiek Hadjar GOENADI
E-Journal Menara Perkebunan Vol 78, No 2: Desember 2010
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (175.341 KB) | DOI: 10.22302/iribb.jur.mp.v78i2.64

Abstract

Abstract A series of research was carried out with the objective to meet the challenge and determine the direction and strategy required for overcoming highly weathered Ultisol soil that impact to low productivity. Selected ameliorating materials, i.e. bio-char, compost, and peat were examined their physical characteristics to determine the best combination of them as bioameliorant carrier materials for aggregate stability bacteria.  Bio-char was found to be the most suitable carrier material as it has highest total pore spaces and available water content.  Microbial population obtained from the granular forms of bioameliorant was 107 CFU/gram of the sample until 12 months life time periods. Best vegetative growth performance of maize Bisma var. in Ultisol soil of Experiment Station (KP) Taman Bogo was shown by the application of 100% standard dosage of NPK conventional fertilizers in combination with the addition of 4.2 g/plant of bioameliorant. Yield of dry grain of maize was higher (+15.7 %) by application of 100 % standard dosage and  2.1g bioameliorant/plant (112 kg/ha) than that obtained by standard dosage of conventional fertilizer.  Abstrak Satu rangkaian kegiatan penelitian telah dilakukan untuk menjawab tantangan, arah dan strategi dari berbagai aspek yang terkait erat dengan masalah pelapukan lanjut dan berdampak pada rendahnya produktivitas tanah Ultisol.  Beberapa bahan terpilih seperti arang pirolisis (bio-char), kompos, dan gambut dianalisis secara fisik untuk menetapkan kombinasi terbaik sebagai bahan pembawa bioamelioran dengan bahan aktif bakteri pemantap agregat.  Bio-char memiliki keunggulan dalam hal total ruang pori dan  kapasitas air tersedia yang lebih tinggi.  Sampai dengan 12 bulan masa simpan, populasi bakteri pada bioamelioran granul dengan bahan pembawa bio-char berjumlah 107 CFU/gram contoh. Pertumbuhan terbaik tanaman jagung varietas Bisma pada tanah Ultisol diperoleh dari perlakuan 100 % pupuk NPK tunggal yang dikombinasikan dengan   4,2 g bioamelioran/tanaman. Sementara itu, perlakuan 100 % dosis pupuk NPK tunggal yang dikombinasikan dengan 2,1 g bioamelioran/tanaman (112 kg/ha) menghasilkan bobot pipilan kering jagung yang lebih tinggi (+15,7 %) apabila dibandingkan dengan perlakuan 100% dosis pupuk NPK tunggal saja. 
Back matter 2018 no 2 Masna Maya Sinta
E-Journal Menara Perkebunan Vol 86, No 2 (2018): Oktober 2018
Publisher : INDONESIAN RESEARCH INSTITUTE FOR BIOTECHNOLOGY AND BIOINDUSTRY

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (177.471 KB) | DOI: 10.22302/iribb.jur.mp.v86i2.320

Abstract

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