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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 50 Documents
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Search results for , issue "vol. 25 no. 7 (2024)" : 50 Documents clear
Growth and productivity of stevia variety Cibodas Manis 3 (Stevia rebaudiana) in 40 days planting with agroforestry MILA NADIA CHOERIAH; NURHENI WIJAYANTO; IRMANIDA BATUBARA
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250749

Abstract

Abstract. Choeriah MN, Wijayanto N, Batubara I. 2024. Growth and productivity of stevia variety Cibodas Manis 3 (Stevia rebaudiana) in 40 days planting with agroforestry. Biodiversitas 25: 3277-3283. Stevia (Stevia rebaudiana Bertoni.) is a shrub plant that can be used as a substitute for sugar cane and has the potential to be cultivated in agroforestry ways. This study aims to analyze the growth and productivity of stevia in agroforestry systems compared to monocultures. Stevia was planted in 2 types of land, namely agroforestry and monoculture. The research location's soil and area's climatic conditions were observed stevia agroforestry was grown under pine, eucalyptus, and coffee trees. During stevia planting, the height was measured. Stevia was harvested 40 days after planting, and leaf area, number of leaves, leaf weight, and harvest productivity were measured. In addition, chlorophyll and stevioside yields were analyzed using UV VIS and LC-MS/MS spectrometry. Stevia in agroforestry land had higher chlorophyll and stevioside content than monoculture, although not as good as stevia in monoculture, which had higher height, number of leaves, leaf area, wet weight, dry weight, and productivity compared to agroforestry. The total stevioside produced from agroforestry land was 1.63 kg/ha, while it was 2.19 kg/ha from monoculture land. Stevia in agroforestry land also has a higher secondary metabolite content than in monoculture. This is related to the growing conditions that stress stevia. Pearson correlation test results also show a relationship between the amount of chlorophyll and the stevioside content in stevia plants.
Diversity and morphological characteristics of flowers in reticulatus, inodorus, and makuwa group melon (Cucumis melo) HELFI EKA SAPUTRA; MUHAMAD SYUKUR; WILLY BAYUARDI SUWARNO; SOBIR SOBIR
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250735

Abstract

Abstract. Saputra HE, Syukur M, Suwarno WB, Sobir. 2024. Diversity and morphological characteristics of flowers in reticulatus, inodorus, and makuwa group melon (Cucumis melo). Biodiversitas 25: 3130-3137. Characterization of melon (Cucumis melo L.) flowers is useful for crossing. This research aimed to obtain information about the diversity and morphological characteristics of melon flowers in the reticulatus, inodorus, and makuwa groups. Fifteen genotypes from 3 groups (5 genotypes each) were tested. There were 8 flower characters observed. Principal component and cluster analysis have been used to calculate similarity coefficients. Grouping based on flower characters was divided into 4 groups with a diversity of 52.7%. There are no morphological characteristics of flowers to characterize each group of melons. The reticulatus group has flower characteristics as follows: NMFP of 5-5.4 petals, NHFP of 5-5.2 petals, SLMF of 0.95-2.9 cm, SLHF of 0.36-1.98 cm, DMFS of 1.01-1.34 mm, DHFS of 2.57- 3.15 mm, DMF of 3.12-4.99 cm, and DHF of 8.03-8.61 cm. The inodorus group has flower characteristics as follows: NMFP of 4-5 petals, NHFP of 5 petals, SLMF of 1.34-3.18 cm, SLHF of 0.7-2.46 cm, DMFS of 1.16-1.61 mm, DHFS of 2.72-2.94 mm, DMF of 3.47-4.34 cm, and DHF of 6.56-8.15 cm. The makuwa group has flower characteristics as follows: NMFP of 5-8 petals, NHFP of 5-6 petals, SLMF of 1.32-1.98 cm, SLHF of 1.04-1.74 cm, DMFS of 1.07-1.36 mm, DHFS of 2.67- 3.86 mm, DMF of 3.31-3.85 cm, and DHF of 7.16-8.35 cm.
Stand growth and carbon stocks of community-based mangrove rehabilitation in Singkawang City, West Kalimantan, Indonesia DWI ASTIANI; EMI ROSLINDA; TRI WIDIASTUTI; HANNA ARTUTI EKAMAWANTI; WIWIK EKYASTUTI; WAHYU DWIANTO; FARIH ALFIKRI; EUFEMIA Y. NGIDU
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250701

Abstract

Abstract. Astiani D, Roslinda E, Widiastuti T, Ekamawanti HA, Ekyastuti W, Dwianto W, Alfikri F, Ngidu EY. 2024. Stand growth and carbon stocks of community-based mangrove rehabilitation in Singkawang City, West Kalimantan, Indonesia. Biodiversitas 25: 2799-2805. The ability of tropical mangrove ecosystems to store carbon in the form of biomass is well-founded. The mangrove forest in Setapuk Besar Village, Singkawang City, West Kalimantan Province, Indonesia has been managed by community members in response to the development of alluvial sediment land in recent years. The community's efforts in Setapuk Besar Village to rehabilitate and manage mangrove forests illustrate how essential mangrove forests are to the local ecology and should be applauded for their success. This study aims to investigate the growth and development, carbon stored and sequestered in mangrove forests planted by community in Setapuk Besar between 2015 and 2020. Field survey was conducted from July to November 2022 by mapping the sediment land that had expanded since 2015 and continued with the measurement of density and diameter of mangrove stands that were systematically planted in each planting year using sampling plot method. In addition, site factors such as pH, carbon content, nitrogen, phosphorus, CEC, and soil solution salinity were investigated. Our findings indicate that due to alluvial sedimentation, the coastline in Setapuk village is expanding by 3.3 to 4.6 ha annually, accumulating 24 ha throughout a six-year period. The mangroves planted in 2015-2016 are now thriving on the new land. The six-year-old trees diameter achieved an average of 6.80±0.13 cm, averaged 5.1 m in height, and increased from 0.45 to 2.2 cm in diameter. The total biomass (above and below-ground) of plants aged 4, 5 and 6 years was 250, 303 and 430 tons ha-1, with a potential to absorb carbon of 28-33 tons ha-1 year-1, correspondingly. Given that this mangrove area plays a crucial role in CO2 capture in nature and has a relatively high ability to absorb and store carbon, conservation efforts and best practices are necessary for this forest.
Genetic comparison among some cultivars of Catharanthus roseus (L.) G. Don. using three intergenic spacers of the chloroplast genome AGUS HERY SUSANTO; MURNI DWIATI
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250721

Abstract

Abstract. Susanto AH, Dwiati M. 2024. Genetic comparison among some cultivars of Catharanthus roseus (L.) G. Don. using three intergenic spacers of the chloroplast genome. Biodiversitas 25: 2999-3007. Catharanthus roseus (L.) G. Don belongs to the Apocynaceae family and is recognized as both an ornamental plant and a medicinal herb. By means of both hybridization and mutation breeding, numerous cultivars of C. roseus have been developed over time. This encourages the necessity for molecular characterization to establish a DNA barcode for each cultivar, particularly in relation to its potential as a medicinal herb. Therefore, this study aimed to genetically compare some cultivars of C. roseus based on three Intergenic Spacers (IGS) of the chloroplast genome, namely trnQ-rps16, rps16-trnK, and trnL-rpl32. Ten samples of C. roseus were randomly collected from around Purwokerto City, Central Java, Indonesia, representing cultivars with various corolla and flower eye colors. Universal primers were used to amplify the three molecular markers. The results showed that some insertion-deletions (indels) with rps16-trnK and trnL-rpl32 were observed, indicating some potential barcodes for C. roseus cultivars, following pharmacological analysis. On the other hand, very little genetic difference among samples was found with trnQ-rps16. It can be concluded that some other molecular markers, specifically those more closely related to the expression of flower color in C. roseus, should be explored to obtain candidate DNA barcodes in assisting the authentication of medicinal herbs.
Population structure and exploitation rate of striped snakehead (Channa striata) in Kawunganten Swamp, Cilacap, Indonesia: Important for fisheries management NUNING SETYANINGRUM; SUGIHARTO SUGIHARTO; PRIYO SUSATYO
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250747

Abstract

Abstract. Setyaningrum N, Sugiharto, Susatyo P. 2024. Population structure and exploitation rate of striped snakehead (Channa striata) in Kawunganten Swamp, Cilacap, Indonesia: Important for fisheries management. Biodiversitas 25: 3255-3263. Snakehead (Channa striata) is a swamp fish spread in almost all Indonesian waters and has a high economic value. In addition, Bringkeng, Grugu, and Babakan Villages are included in Kawunganten Swamp areas with good fishing potential. Therefore, this study aimed to determine the population structure and the exploitation rate of Channa striata in Kawunganten Swamp Cilacap, Indonesia. The survey method with purposive random sampling was used and this study was conducted from April to July 2020. The fish samples were collected from three Bringkeng, Grugu, and Babakan Swamp stations, while the variables examined were abundance and rate of exploitation. The parameters measured included the length of Channa striata as well as the growth and mortality rate in each swamp. Abundance was analyzed using the Kruskal-Wallis test, and exploitation rate was assessed with Pauly's model using FAO-ICLARM Stock Assessment Tools II (FISAT II). The results showed that the highest abundance of Channa striata was in Bringkeng station, three times higher than in Babakan station. Bringkeng and Babakan stations were considered a fish-rearing swamp due to the dominance of adolescence-sized samples. Grugu was identified as the breeding area because many of the fish present were in the reproductive phase. Estimated growth parameters showed a maximum length (L?) of 35.18 cm, while exploitation rate of 0.28 was not considered excessive capture. Efforts to manage Channa striata were important to preserving biodiversity and ensuring the sustainability of Kawunganten Swamp ecosystem for future generations.
Assessment of nematode and microbial diversity and screening of entomopathogens in revegetated post-coal-mining land in Kutai Kartanegara District, East Kalimantan, Indonesia SOPIALENA SOPIALENA; ROSFIANSYAH ROSFIANSYAH; ANDI SURYADI
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250713

Abstract

Abstract. Sopialena, Rosfiansyah, Suryadi A. 2024. Assessment of nematode and microbial diversity and screening of entomopathogens in revegetated post-coal-mining land in Kutai Kartanegara District, East Kalimantan, Indonesia. Biodiversitas 25: 2921-2930. Post-coal-mining management should strive toward site revegetation. The success of such revegetation efforts is largely determined by the soil's fertility status, which encompasses physical, chemical, and biological components. Biological fertility is indicated by the presence and abundance of soil microbes and nematodes. The objective of this study was to identify the diversity of nematodes and soil microbes in ex-coal-mining land revegetated with oil palm in Kutai Kartanegara District (East Kalimantan, Indonesia), to screen for entomopathogenic nematodes and microbes, and to analyze their relationships with the chemical fertility status of the land. As a control, non-mining land was also investigated. The results showed that microbial diversity and density (including fungi and bacteria) in the ex-coal-mining area were significantly lower compared to the control. Additionally, a decrease in microbial diversity and density was found in deeper soil layers of both post-mining and non-mining lands. In contrast, soil nematodes were more abundant in post-mining land, both in terms of diversity and density, and were also more plentiful in the deeper soil layers. Among the nematodes and microbes studied, only Heterorhabditis and Steinernema (nematodes), Trichoderma (fungi), and Bacillaceae (bacteria) were identified as entomopathogens, causing death in Tenebrio molitor L. larvae. Overall, soil fertility in ex-coal-mining land was observed to be lower, characterized by decreased soil pH, basic saturation, Soil Organic Carbon (SOC), and nutrient content, which contributed to a reduced microbial community compared to non-mining land.
Short Communication: Calcareous nannofossil assemblages and age determination in Leuwi Kenit, Ciletuh Palabuhanratu Geopark, Indonesia SANTI DWI PRATIWI; NURDRAJAT NURDRAJAT; FITTRIE MEYLLIANAWATY PRATIWY; SHUN CHIYONOBU
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250741

Abstract

Abstract. Pratiwi SD, Nurdrajat, Pratiwy FM, Chiyonobu S. 2024. Short Communication: Calcareous nannofossil assemblages and age determination in Leuwi Kenit, Ciletuh Palabuhanratu Geopark, Indonesia. Biodiversitas 25: 3200-3207. Our meticulous and comprehensive investigation of nannofossil diversity in Leuwi Kenit, Sukabumi District, West Java Province, Indonesia, a part of the Ciletuh Palabuhanratu UGG, where the study of nannofossils is limited, is of significant importance their implications for age determination and clarifying the geological history of the region. The initial documentation of calcareous nannofossils in the Leuwi Kenit traverse of the Cikarang Member within the Jampang Formation resulted in the identification of thirty-three species from 62 samples. The studied section reveals seven nannofossil biozones, arranged from oldest to youngest as follows: LO Sphenolithus ciperoensis; LO Cyclicargolithus abisectus; FO Sp. disbelemnos; FCO Helicosphaera carteri; FO Sp. belemnos; LCO Sp. belemnos; LO Sp. conicus and FCO Sp. heteromorphus. Notably, the abundance of Coccolithus pelagicus, Cyclicargolithus floridanus, Reticulofenestra spp., and Sphenolithus spp. characterized their occurrence throughout the section. The diversity and preservation of nannofossils were found to be good, and based on nannofossil biohorizons, the age of Leuwi Kenit spans from 24.3 million years ago to around 17.7 million years ago at Paleogene (Oligocene age) to Neogen Periode (Early Miocene age). Based on the nannofossils assemblages, results show that the area has many important indicator species, making it essential for future research on ancient ocean conditions and past climate changes within this geopark.
Biochemical composition and volatile profile analysis of three varieties of Coffea arabica and their correlation with the microclimate of Mount Tangkuban Perahu, West Java, Indonesia ROSY ANNAZA FIRNABILLAH; ERI MUSTARI; ERLY MARWANI
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250748

Abstract

Abstract. Firnabillah RA, Mustari E, Marwani E. 2024. Biochemical composition and volatile profile analysis of three varieties of Coffea arabica and their correlation with the microclimate of Mount Tangkuban Perahu, West Java, Indonesia. Biodiversitas 25: 3264-3276. The quality of coffee is determined by various biochemical compounds, including chlorogenic acid, caffeine, trigonelline, sucrose, and oil, as well as the volatile metabolite profile in coffee beans. Genetic factors and environmental conditions at the coffee cultivation site influence the composition of these compounds. This study aimed to analyze the biochemical composition and volatile profile of various coffee samples, including Ateng, Tim-Tim, and Sigarar Utang, and investigate their correlation with microclimate factors. Different analytical methods were used to examine the green beans, including High-Performance Liquid Chromatography-Mass Spectrometry (HPLC-MS) for caffeine, chlorogenic acids, sucrose, and trigonelline, Soxhlet methods for oil content determination, and Gas Chromatography-Mass Spectrometry (GC-MS) for volatile compound analysis. The results showed distinct biochemical components and metabolite profiles among the three arabica coffee varieties. The Ateng variety had the highest concentrations of chlorogenic acid, while the Tim-Tim variety had the lowest content of these compounds. Trigonelline and caffeine content was similar across all varieties. Sucrose content was highest in the Sigarar Utang variety, while oil content was higher in the Ateng and Tim-Tim varieties compared to Sigarar Utang. Principal Component Analysis (PCA) showed significant metabolite variation among the three varieties, with PC1 and PC2 accounting for 69.2% of the variance. Furthermore, Partial Least Squares-Discriminant Analysis (PLS-DA) successfully distinguished the three varieties and identified potential biomarker compounds for classification. Additionally, the study discovered that the environmental factor, specifically light intensity affected the sucrose and oil compounds in arabica green beans coffee. The study concluded that the three varieties' biochemical composition and volatile metabolites differed. Certain compounds were found to correlate with measured microclimatic factor.
The relationship between habitat quality and the diversity of phytoplankton, zooplankton, and nekton in mangrove ecosystems of Bawean Island, Indonesia CATUR RETNANINGDYAH; ENDANG ARISOESILANINGSIH; VIKY VIDAYANTI; QATHRUNNADA SALSABILA; PURNOMO PURNOMO
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250723

Abstract

Abstract. Retnaningdyah C, Arisoesilaningsih E, Vidayanti V, Salsabila Q, Purnomo P. 2024. The relationship between habitat quality and the diversity of phytoplankton, zooplankton, and nekton in mangrove ecosystems of Bawean Island, Indonesia. Biodiversitas 25: 3017-3026. Mangrove ecosystem consists of biotic and abiotic components that interact with each other to form a food chain. This study aims to analyze the relationship between the diversity and abundance of phytoplankton, zooplankton, and nekton and water quality, human activities, and carbon stock in the mangrove ecosystem in Bawean Island. Data was collected from 11 sampling locations across the island. At each location, we observed the diversity of phytoplankton, zooplankton, and nekton and carbon stock of mangroves along with data of water quality (salinity, pH, dissolved oxygen/DO, biochemical oxygen demand/BOD, nitrate, orthophosphate, dihydrogen sulfide/H2S, dissolved lead/Pb) and human activities based on the hemeroby index. The research results showed that the level of DO, H2S, nitrate, and orthophosphate did not meet the quality standard according to the Indonesian government. The level of disturbance from human activities varied from ?-mesoherobic to metahemerobic categories. Human activities and higher levels of H2S in waters had a negative relationship with mangrove ecosystem carbon stock and the diversity and taxa richness of phytoplankton, zooplankton, and nekton. Phytoplankton diversity had a positive relationship with zooplankton, while zooplankton diversity had a positive relationship with nekton. High carbon stock in the mangrove ecosystem will likely increase the diversity of phytoplankton, zooplankton, and nekton. The result of this study implies that anthropogenic activities need to be controlled to improve the Bawean Island mangrove ecosystem services.
Diversity of endophytic bacteria in two banana cultivars and their potential for plant growth promoter TRIASTUTI RAHAYU; YEKTI ASIH PURWESTRI; SITI SUBANDIYAH; YASIR SIDIQ; DONNY WIDIANTO
Biodiversitas Journal of Biological Diversity Vol. 25 No. 7 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d250704

Abstract

Abstract. Rahayu T, Purwestri YA, Subandiyah S, Sidiq Y, Widianto D. 2024. Diversity of endophytic bacteria in two banana cultivars and their potential for plant growth promoter. Biodiversitas 25: 2828-2838. The Klutuk banana plant (Musa balbisiana colla) is recognized as a resistant plant against biotic and abiotic stresses. The resistance trait of the cultivar is not exactly revealed but is most likely related to the presence of endophytic bacteria. This study aimed to determine the variation of banana cultivars and their organs on endophytic bacterial populations and their character as plant growth promoters (PGP). The study involved isolating endophytic bacteria from the root, corm, and petiole of cv. Klutuk and cv. Ambon, aged 4-5 months. Isolated endophytic bacteria were evaluated based on plant-growth-promoting (PGP) criteria. Subsequently, 16S rRNA sequences were amplified using 16S primers, 27f and 1492r, then sequenced. The obtained isolates were also identified by comparing the 16S sequences to the NCBI gene bank. The results showed that the population and number of isolates with the most PGP characters were in both banana cultivars' roots, petiole, and corm. Endophytic bacteria with multiple traits as PGP are composed of Phylum Proteobacteria (gamma, alpha, beta), Firmicutes, and Actinobacteria members. Several species are potential as they have multiple PGP traits with high-quantity test results, namely Microbacterium testaceum DSM 20166 strain, Simplicispira sp. CPCC 100842 strain, Klebsiella grimontii SB73 strain, Enterobacter mori LMG 25706 strain, Pantoea sp. CoA11 strain, Agrobacterium tumefaciens IAM 12048, Variovorax guangxiensis GXGD002 strain, Serratia nematodiphila DZ0503SBS1 strain, Bosea thiooxidans BI-42 strain, Erwinia tasmaniensis Et1/99 strain, Methylobacterium fujisawaense DSM 5686 strain, K2 isolate, K8 isolate, and K18 isolates. This study also revealed the endophytic bacterial population and character as plant organs influenced PGP. The roots and petioles became the banana plant organs colonized by endophytic bacteria with multiple traits as PGP. Overall, several isolates were discovered in cv. Klutuk were suspected of being new species with potential as PGP agents, and these were not identified in cv. Ambon.

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