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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,259 Documents
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Infraspecific morphological and genome size variations in Linum glaucum in Iran SEYED MEHDI TALEBI; MASOUD SHEIDAI; MORTEZA ATRI; FARIBA SHARIFNIA; ZAHRA NOORMOHAMMADI
Biodiversitas Journal of Biological Diversity Vol. 16 No. 1 (2015)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d160109

Abstract

Talebi SM, Sheidai M, Atri M, Sharifnia F, Noormohammadi Z. 2015. Infraspecific morphological and genome sizevariations in Linum glaucum in Iran. Biodiversitas 16: 69-78. There are many discussions about taxonomic position of Linum glaucumin different Flora. In this study, the morphological traits associated with the nuclear genome size were used for identification ofinfraspecific variations in the nine populations of L. glaucum. Twenty three qualitative and quantitative morphological characteristicswere investigated. The Analysis of variance tests showed significant difference for some morphological features. The CanonicalCorrespondence Analysis of habitat ecological factors showed that each of the habitats had prominent characteristics, and also Pearson’scoefficient of correlation confirmed the significant correlations between the morphological features in relation to ecological factors. Inthe morphological Unweighted Paired Group using Average method tree, populations were separated from each other, so that populationNo. 4 was separated from others. In the flow cytometery investigations, variation of about 1.19 times was presented between themaximum and minimum averages of the genome sizes in the populations. Minimum amount of genome size was found in populationsNo. 4. Significant correlations occurred between the nuclear genome size with habitat elevation as well as some of the quantitativemorphological features. The mentioned variations caused to difference between the populations and lead to creation of ecotype andecophene in the studied populations.
Fish biodiversity in coral reefs and lagoon at the Maratua Island, East Kalimantan HAWIS H. MADDUPPA; AULIA R. FARHAN; DEDE SUHENDRA
Biodiversitas Journal of Biological Diversity Vol. 13 No. 3 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130308

Abstract

Madduppa HH, Agus SB, Farhan AR, Suhendra D, Subhan B. 2012. Fish biodiversity in coral reefs and lagoon at the Maratua Island, East Kalimantan. Biodiversitas 13: 145-150. Fishes are one of the most important biotic components in the aquatic environment. They are filling different habitats, including coral reef and lagoon. This study aims to (i) assess biodiversity in coral reef and lagoon in Maratua Island, East Kalimantan, and (ii) compare the fish community indices (Shannon-Wiener diversity, Evenness, and Dominance) between the coral reef and lagoon. A total of 159 fish species of belonging to 30 families were observed during five visual census of the study period. The number of species on coral reefs is higher (121 species) than in the lagoons (47 species). Relative abundance (%) of each species also varied and did not form a specific pattern. However, a clear cluster between the coral reef and lagoon habitats fromfish relative abundance based on multivariate analysis and dendogram Bray-Curtis Similarity was revealed. The Evenness index value (E) ranged from 0.814 to 0.874, the dominance index (C) ranged from 0.023 to 0.184, and the Shannon-Wiener diversity index (ln base, H') ranged from 1.890 to 4.133. Fish biodiversity in coral reefs was higher (H'= 3.290±0.301) than in the lagoon (H' = 2.495±0.578).
The conservation of mitochondrial genome sequence in Leucadendron (Proteaceae) MADE PHARMAWATI; GUIJUN YAN; PATRICK M. FINNEGAN
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130201

Abstract

Pharmawati M, Yan G, Finnegan PM. 2012. The conservation of mitochondrial genome sequence in Leucadendron (Proteaceae). Biodiversitas 13: 53-58. Mitochondrial DNA (mtDNA) is useful for developing molecular markers and for studying plant phylogeny.However, its usefulness depends on the degree of detectable sequence variation. In seven species of the genus Leucadendron, PCRRFLP failed to reveal any polymorphisms in seven separate regions of the mtDNA. Sixty-two primer pair - enzyme combinations were used to assay at least 248 restriction sites, resulting in the direct sampling of a minimum of 992 bp across 17,500 bp of mt DNA. The highly conserved nature of the mtDNA sequence in the genus Leucadendron was confirmed by the absence of sequence variation in the 1434 bp mtDNA nad1/B-C intron across these species. Mitochondrial DNA sequences are more highly conserved than the chloroplastDNA sequences in Leucadendron and the mtDNA sequences in many other plant genera. Phylogenetic analysis using this intronsequence was consistent with other phylogenetic analyses in regard to the position of Proteaceae.
Jernang rattan (Daemonorops draco) management by Anak Dalam Tribe in Jebak Village, Batanghari, Jambi Province IIK SRI SULASMI; NISYAWATI NISYAWATI; YOHANES PURWANTO; SITI FATIMAH
Biodiversitas Journal of Biological Diversity Vol. 13 No. 3 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130309

Abstract

Sulasmi IS, Fatimah S, Nisyawati. 2012. Jernang rattan (Daemonorops draco) management by Anak Dalam Tribe in Jebak Batanghari, Jambi Province. Biodiversitas 13: 151-160. Management of Jernang Rattan (Daemonorops draco Willd.) in Jebak Forest, Batanghari, Jambi is not well documented. It is noted that fruit of D. draco is the best income source for Anak Dalam Jambi people since 1624. They harvest fruit of D. draco as much as they need. The Jebak forest is an open access, so all the people of Anak Dalam Jambi Tribe have the same right and responsibility on the forest. However, almost 60% of Jebak Forest area has been degraded because of illegal conversion into oil palm plantation. This is the reason why people of Suku Anak Dalam, try to cultivate D. draco by growing 40 clumpsof this species in their rubber plantation. The aim of their activity is to conserve D. draco at their forest. Based on the recent situation, research study of jernang rattan management in Jebak Forest was conducted. The research method was semi structural interview. All data were analyzed descriptively. The results showed that the management and cultivation of D. draco in Jebak Forest was very difficult because the availability of seeds was not sufficient for root stocks.
Isolation and phylogenetic relationship of orchid-mycorrhiza from Spathoglottis plicata of Papua using mitochondrial ribosomal large subunit (mt-Ls) DNA SUPENI SUFAATI; VERENA AGUSTINI; SUHARNO SUHARNO
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130202

Abstract

Sufaati S, Agustini V, Suharno. 2012. Isolation and phylogenetic relationship of orchid-mycorrhiza from Spathoglottis plicata of Papua using mitochondrial ribosomal large subunit (mt-Ls) DNA. Biodiversitas 13: 59-64. All terrestrial mycorrhiza have mutual symbiotic with mycorrhizal fungi in order to gain nutrient from surrounding environment. This study was done to isolate and to identify mycorrhiza orchid that associates with Spathoglottis plicata and were collected from Cagar Alam Pegunungan Cycloops (CAPC), Jayapura. Isolation of mycorrhizal orchid came after the modified method of Manoch and Lohsomboon (1992). The result showed that based on the morphological characteristic, there were presumably 14 isolations. However, only 2 isolations have been known, namely Rhizoctonia sp. and Tulasnella sp., while the rest were not identified yet. Among them, the DNA of the 11 isolations were able to beextracted for further analysis. The constructed phylogenetic tree performed that those species could be grouped into 4 major clusters. Two species, Rhizoctonia sp. and Tulasnella sp. were in different clusters.
Diversity of macrofungal genus Russula and Amanita in Hirpora Wildlife Sanctuary, Southern Kashmir Himalayas SHAUKET AHMED PALA; ABDUL HAMID WANI; RIYAZ AHMAD MIR
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130203

Abstract

Pala SA, Wani AH, Mir RA. 2012. Diversity of macrofungal genus Russula and Amanita in Hirpora Wildlife Sanctuary, Southern Kashmir Himalayas. Biodiversitas 13: 65-71. The Hirpora Wildlife Sanctuary that extends over an area of 114 km2 lies in the Pir Panjal range at a distance of 70 km in south-west of summer capital Srinagar. It is rich in biodiversity including macrofungal diversity. The Sanctuary has been subjected to high ecological and anthropogenic disturbance due to the construction of Mughal road which is major threat for its biodiversity. Since there is hardly any report of documentation of macrofungi from this sanctuary. In this back drop a survey was carried out during the year 2010 and 2011 to explore and invetorise macrofungal diversity of the sanctuary. During thesurvey a no of macrofungi were documented, among which Amanita and Russula were dominant genus represented by 7 species each. All the 14 species viz. Amanita ceciliae (Berk. & Broome) Bas. Amanita flavoconia G.F. Atk., Amanita muscaria var. formosa Pers., Amanita pantherina (Fr.) Krombh., Amanita phalloides (Fr.) Link., Amanita vaginata (Bull. ex Fr.) Vitt., Amanita virosa (Fr.) Bertillon, Russula aeruginea Fr., Russula atropurpurea (Krombh.) Britz., Russula aurea Pers., Russula cyanoxantha (Schaeff.) Fr., Russula delica Fr. Russula emetica (Schaeff. ex Fr.) Gray. and Russula nobilis Velen. are ectomycorrhizal in nature and among them Russula aeruginea Fr. is reported first time from the Kashmir.
Effect of plantations on plant species diversity in the Darabkola, Mazandaran Province, North of Iran HASSAN POURBABAEI; FATEMEH ASGARI; ALBERT REIF; ROYA ABEDI
Biodiversitas Journal of Biological Diversity Vol. 13 No. 2 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130204

Abstract

Pourbabaei H, Asgari F, Reif A, Abedi R. 2012. Effect of plantations on plant species diversity in the Darabkola, Mazandaran Province, North of Iran. Biodiversitas 13: 72-78. In this study, the effect of plantations on plant species diversity was investigated in Darabkola, Mazandaran province, north of Iran. To conduct the study, a natural mixed forest, a broad–leaved plantation (Alnus subcordata-Acer velutinum) and a coniferous plantation (Cupressus sempervirens var. horizontalis-Pinus brutia) were selected. 35 sampling plots weretaken in systematic random method in each area. Data analysis was carried out using Simpson, Hill's N2, Shannon-Wiener and Mc Arthur's N1 diversity indices, Smith and Wilson evenness index and species richness. Results revealed that there were 32 plant species in natural forest and 30 plant species were found in each plantation. Rosaceae and Lamiaceae were the main families in the studied areas. Diversity and evenness indices of all vegetation layers had the most values in the natural forest. Richness of woody plants had the highest value in the natural forest, while herbaceous richness was the highest in coniferous plantation. Mc Arthur's N1 had the highest value among diversity indices and followed by Hill's N2, Shannon-Wiener and Simpson indices, respectively. In addition, results showed thatthere were significant differences among diversity, evenness and richness indices in all vegetation layers in the three studied areas.
Diversity and phosphate solubilization by bacteria isolated from Laki Island coastal ecosystem SRI WIDAWATI
Biodiversitas Journal of Biological Diversity Vol. 12 No. 1 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120104

Abstract

Widawati S. (2011). Diversity and phosphate solubilization by bacteria isolated from Laki Island coastal ecosystem. Biodiversitas 12: 1721. Soil, water, sand, and plant rhizosphere samples collected from coastal ecosystem of Laki Island, Jakarta, Indonesia were screened for phosphate solubilizing bacteria (PSB). While the population was dependent on the cultivation media and the sample type, the highest bacterial population was observed in the rhizosphere of Ipomoea aquatica. The PSB strains isolated from the sample registered 18.59 g-1 L-1. 18.31 g-1 L-1, and 5.68 g-1 L-1 of calcium phosphate (Ca-P), Al-P and rock phosphate solubilization after 7-days. Phosphate solubilizing capacity was the highest in the Ca-P medium. Two strains, 13 and 14, registered highest phosphomonoesterase activities (2.01 µgNP.g-1.h-1 and 1.85NP µg.g-1.h-1) were identified as Serratia marcescens, and Pseudomonas fluorescens, respectively. Both strains were isolated from the crops of Amaranthus hybridus and I. aquatica, respectively, which are commonly observed in coastal ecosystems. The presence of phosphate solubilizing microorganisms and their ability to solubilize various types of phosphate species are indicative of the important role of both species of bacteria in the biogeochemical cycle of phosphorus and the plant growth in coastal ecosystems.
Identification and characterization of Salmonella typhi isolates from Southwest Sumba District, East Nusa Tenggara based on 16S rRNA gene sequences CHARIS AMARANTINI; LANGKAH SEMBIRING; HARIPURNOMO KUSHADIWIJAYA; WIDYA ASMARA
Biodiversitas Journal of Biological Diversity Vol. 12 No. 1 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120101

Abstract

Amarantini C, Sembiring L, Kushadiwijaya H, Asmara W T . It was also found that the isolates which belong to S. typhi species formed several different centers of diversity within the 16S rRNA gene tree. Each clade consisted of the strains from different geographical places in the District. Thus, to conclude the inquiry, there was evident inter-geographical spread of the strains and it tended to spread further into more remote areas in the District.
Species diversity of Amorphophallus (Araceae) in Bali and Lombok with attention to genetic study in A. paeoniifolius (Dennst.) Nicolson AGUNG KURNIAWAN; I PUTU AGUS HENDRA WIBAWA; BAYU ADJIE`
Biodiversitas Journal of Biological Diversity Vol. 12 No. 1 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120102

Abstract

Kurniawan A, Wibawa IPAH, Adjie B (2011). Species diversity of Amorphophallus (Araceae) in Bali and Lombok with attention to genetic study in A. paeoniifolius (Dennst.) Nicolson. Biodiversitas 12: 7-11. Amorphophallus belongs to Araceae family that consists of more than 170 species worldwide and distributed predominantly in tropical countries, especially in Asia and Africa. The study of Amorphophallus in Bali and Lombok Islands had been conducted to reveal its diversity. Genetic study was also conducted among Amorphophallus paeoniifolius species to recognize the variation within the species. The fieldworks showed three species Amorphophallus distributed in Bali, notably A. muelleri Blume, A. paeoniifolius (Dennst.) Nicolson, A. variabilis Blume and two species in Lombok, notably A. muelleri and A. paeoniifolius. Var. hortensis and var. sylvestris were two varieties of A. paeoniifolius that commonly found either in Bali or in Lombok. Genetic study on A. paeoniifolius indicated that there was no genetic variation in cpDNA region of trnL-F IGS within the species.

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