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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,259 Documents
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Plants utilization by the communities of Bharsar and adjoining area of Pauri Garhwal District, Uttarakhand, India ANAND S. BISHT; K. D SHARMA
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150114

Abstract

Bisht AS, Sharma KD. 2014. Plants utilization by the communities of Bharsar and adjoining area of Pauri Garhwal District, Uttarakhand, India. Biodiversitas 15: 94-100. Garhwal Himalaya possesses luxuriant a varied vegetation with in the Himalaya region. Almost every plant has economic value in the form of shelter, food, water, medicine, fuel and industrial products and fodder. Surveys were conducted in entire Bharsar, Pauri Garhwal district of Uttarakhand, India in order to get information on traditional uses of plants by local inhabitants. A total of 138 plants were collected that some species had more than one function of which 39 species of vegetables, 28 species of medicinal plants, 19 species of fruits, 18 species of ornamental flowers, 12 species of forest plants, 7 species of agroforestry and social forestry, 8 species of spices and condiments, 6 species of minor cereal crop plants, 5 species of pulses, and 4 species of oil seed plants were found economically important as they are used by the people frequently for various purposes.
Short Communication: A new variety of Pholiota microspora (Agaricales) from Nepal MAHESH K. ADHIKARI; KAZUO WATANABE; G. P. PARAJULI
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150115

Abstract

Adhikari MK, Watanabe K, Parajuli GP. 2014. A new variety of Pholiota microspora (Agaricales) from Nepal. Biodiversitas 15: 101-103. In the fall of late rainy season 2011, a new Pholiota (Fr.) P. Kumm. (Agaricales, Strophariaceae) was collected in the Quercus forest of Phulchowki (Kathmandu valley) along the trial line, on the dead log at an altitude of 2600m. The specimen gathered was quite small. It was brought to laboratory and cultivated in NARC, Pathology laboratory, Lalitpur, Kathmandu, Nepal. The mushroom has been identified as Pholiota microspora (Berk.) Sacc. var. himalensis var. nov..
Short Communication: A new record of Giganthias immaculatus Katayama, 1954 (Perciformes: Serranidae) from Indonesia TEGUH PERISTIWADY; PETRUS CH. MAKATIPU; JIANGUO DU
Biodiversitas Journal of Biological Diversity Vol. 15 No. 1 (2014)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d150116

Abstract

Peristiwady T, Makatipu PCh, Du J. 2014. A new record of Giganthias immaculatus Katayama, 1954 (Perciformes: Serranidae) from Indonesia. Biodiversitas 15: 104-107. Three specimens of Giganthias immaculatus Katayama, 1954, were collected from Bitung, North Sulawesi, in October 2009, November 2009 and June 2012. The morphological data for G. immaculatus are similar to those for G. serratospinosus White & Dharmadi, 2012; those species share the following characters: dorsal fin rays IX, 11-13, anal fin rays III, 8 and lateral line high arched. However, the former is clearly distinguishable from G. serratospinosus by pectoral-fin rays 16 or 17 (vs. 13 or 14 for G. serratospinosus); ill rakers (10) + (21-24) (vs. 10+20 or G. serratospinosus). It also differs in the following: body depth, head length, predorsal length, preanal length, upper-jaw length, interorbital width. Initially, this species was collected from Izu-Õshima, Japan. Other localities of capture for this species are: Ago Bay, Shimacho Goza, Shima City, Mie Pref., Tomari, Okinawa, Japan and Taiwan and now recorded also off Bitung, Sulawesi Island, Indonesia.
A comparative phylogenetic analysis of medicinal plant Tribulus terrestris in Northwest India revealed by RAPD and ISSR markers ASHWANI KUMAR; NEELAM VERMA
Biodiversitas Journal of Biological Diversity Vol. 13 No. 3 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130301

Abstract

Kumar A, Verma N. 2012. A comparative phylogenetic analysis of medicinal plant Tribulus terrestris in Northwest India revealed by RAPD and ISSR markers. Biodiversitas 13: 107-113. Several DNA marker systems and associated techniques are available today for fingerprinting of plant varieties. A total of 5 RAPD and 8 ISSR primers were used. Amplification of genomic DNA of the 6 genotypes, using RAPD analysis, yielded 164 fragments that could be scored, of which 47 were polymorphic, with an average of 9.4 polymorphic fragments per primer. Number of amplified fragments with random primers ranged from 6 (AKR-1) to 10 (AKR-4) and varied in size from 200 bp to 2,500 bp. Percentage polymorphism ranged from 16% (AKR-4) to a maximum of 41% (AKR-4), with an average of 29.6%. The 8 ISSR primers used in the study produced 327 bands across 6 genotypes, of which 114 were polymorphic. The number of amplified bands varied from 7 (ISSR 7) to 12 (ISSR 1&3), with a size range of 250-2,800 bp. The average numbers of bands per primer and polymorphic bands per primer were 40.87 and 14.25, respectively. Percentage polymorphism ranged from 24% (ISSR 4) to 53.84% (ISSR 2), with an average percentage polymorphism of 35.59% across all the genotypes. The 3′-anchored primers based on poly (AC) and poly (AT) motifs produced high average polymorphisms of 53.84% and 40.81%, respectively. ISSR markers were more efficient than the RAPD assay, as they detected 35.59% polymorphic DNA markers in Tribulus terrestris as compared to 29.6% for RAPD markers. Clustering of genotypes within groups was not similar when RAPD and ISSR derived dendrogram were compared, whereas the pattern of clustering of the genotypes remained more or less the same in ISSR and combined data of RAPD and ISSR.
In Silico chloroplast SSRs mining of Olea species ERTUGRUL FILIZ; IBRAHIM KOC
Biodiversitas Journal of Biological Diversity Vol. 13 No. 3 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130302

Abstract

Filiz E, Koc E. 2012. In Silico chloroplast SSRs mining of Olea species. Biodiversitas 13: 114-117. Simple sequence repeat (SSR) markers are highly informative and have been widely applied as molecular markers in genetic studies. The purpose of present study is to analyze the occurrence and distribution of chloroplast SSRs in genic and intergenic regions from Olea species viz., Olea europaea, Olea europaea subsp. cuspidate, Olea europaea subsp. europaea, Olea europaea subsp. maroccana, Olea woodiana subsp. woodiana by using bioinformatics tools. We identified 1149 chloroplast SSRs (cpSSRs) in all genome and a total of 340 (29.6%) was located in genic regions. It was observed that the most abundant repeat types were found mononucleotide SSR (66.7 %) followed by trinucleotide SSR (28.3 %), dinucleotide (2.7%), tetranucleotide (1.5%) and pentanucleotide (0.8%). cpSSRs located in genic regions were identified only mono- and trinucleotide motifs, the most abundant of which was trinucleotide (16.2%) followed by mononucleotide (14.3%). All types of repeat motif (mono-, di-, tri-, tetra- and pentanucleotide) were detected except hexanucleotide motifs. According to SSRs analysis, the most abundant observed motifs were identified for mono-, di-, tri-, tetra- and pentanucleotide cpSSRs A/T, AT/TA, AAG/CTT, AAAG/AGTTT, and AATCC/ATTGG respectively. This study results provided scientific base for phylogenetics, evolutionary genetics and diversity studies on different Olea species in future.
Taxonomy of Indonesian giant clams (Cardiidae, Tridacninae) UDHI EKO HERNAWAN
Biodiversitas Journal of Biological Diversity Vol. 13 No. 3 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130303

Abstract

Hernawan E. 2012. Taxonomy of Indonesian giant clams (Cardiidae, Tridacninae). Biodiversitas 13: 118-123. A taxonomic study was conducted on the giant clam’s specimens deposited in Museum Zoologicum Bogoriense (MZB), Cibinong Indonesia. Taxonomic overviews of the examined specimens are given with diagnostic characters, remarks, habitat and distribution. Discussion is focused on specific characters distinguishing each species. From seven species known to distribute in Indonesian waters, there are six species,Tridacna squamosa Lamarck, 1819; T. gigas Linnaeus, 1758; T. derasa Roding, 1798; T. crocea Lamarck, 1819; T. maximaRoding,1798; and Hippopus hippopus Linnaeus, 1758. This study suggests the need for collecting specimen of H. porcellanus Rosewater, 1982. Important characters to distinguish species among Tridacninae are interlocking teeth on byssal orifice, life habits, presence of scales and inhalant siphon tentacles.
Assessment of biodiversities and spatial structure of Zarivar Wetland in Kurdistan Province, Iran MAHDI REYAHI KHORAM; KAMAL HOSHMAND
Biodiversitas Journal of Biological Diversity Vol. 13 No. 3 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130305

Abstract

Reyahi-Khoram M, Hoshmand K. 2012. Assessment of biodiversities and spatial structure of Zarivar Wetland in Kurdistan Province, Iran. Biodiversitas 13: 130-134. Wetlands are valuable ecosystems that occupy about 6% of the world’s land surface. Iran has over 250 wetlands measuring about 2.5 million hectares. Zarivar wetland (ZW) is the only natural aquatic ecosystem in Kurdistan province in Iran. The present research was carried out during 2009 through 2010 with the aim of recognizing the capabilities and limitations of ZW through documentary, extensive field visits and also direct field observations during the years of study. Geographic Information System (GIS) has been used to evaluate the land as a main tool. The results of this research showed that ZW has a great talent regarding diversity of bird species and the ecological status of wetland has caused the said wetland welcome numerous species of birds. The results of this research showed that industrial pollutions are not considered as threats to the wetland but evacuation of agricultural runoff and development of Marivan city toward the wetland and the resulting pollution load could be introduced as an important part of thewetland threats. It is recommended to make necessary studies in the field of various physical and biological parameters of the wetland, and also the facing threats and opportunities.Key words: aquatic, biodiversity, environment, wetland, Zarivar
The exploration and diversity of red fruit (Pandanus conoideus L.) from Papua based on its physical characteristics and chemical composition MURTININGRUM MURTININGRUM; ZITA L. SARUNGALLO; NOUKE L. MAWIKERE
Biodiversitas Journal of Biological Diversity Vol. 13 No. 3 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130304

Abstract

Murtiningrum, Sarungallo ZL, Mawikere NL. 2012. The exploration and diversity of red fruit (Pandanus conoideus L.) from Papua based on its physical characteristics and chemical composition. Biodiversitas 13: 124-129. The aim of this study was to determine the diversity of red fruit based on its physical characteristics and chemical composition. Exploratory survey method and laboratory research (pure experiment) were used to assess the physical character and chemical composition of crude red fruit. Physical character of each accession showed a variation on fruit color (dark red and red); the fruit and single fruit (drupa) length ranged from 21-71 cm and 1.2-1.8cm, respectively. The dried red fruit contains 2.03- 3.50% ash, 3.12-6.48% protein, 11.21-30.72% fat, 43.86-79.66% carbohydrate, 3.78- 21.88 mg/100g vitamin C, 2.00-3.14 mg/100g vitamin B1, 0.53-1.11% Ca, 8.32-123.03 ppm Fe, and 0.01-0,33% P, with total carotenoids and total tocopherol ranging from 332.65-3309.42 ppm and 964.52-11917.81 ppm. The clustering analysis result of red fruit based on its physical characteristic and chemical composition showed that the related accessions was U Saem and Tawi Magari, having a 25% similarity. The accession U Saem and Tawi Magari had the highest level of similarity in total carotenoids and total tocopherol. Furthermore, they also perform similar physical characteristics by having triangular cylinder shape, red flesh color, and fruit length category.
Study of biodiversity and limiting factors of Ag-gol Wetland in Hamadan Province, Iran MAHDI REYAHI KHORAM; VAHID NORISHARIKABAD; HOSHANG VAFAEI
Biodiversitas Journal of Biological Diversity Vol. 13 No. 3 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130306

Abstract

Reyahi-Khoram M, Norisharikabad V, Vafaei H. 2012. Study of biodiversity and limiting factors of Ag-gol Wetland in Hamadan Province, Iran. Biodiversitas 13: 135-139. Ag-gol Wetland isone of the important and seasonal wetlands of Iran. This wetland islocated on southeast of Hamadan Province and was declared as a prohibited hunting area by Department of Environment (DoE) of Iran. Identifying the characteristics, capabilities and limiting factors of Ag-gol Wetland is the most important objective of this study. The present study was conducted during 2007 through 2010. Documentary and observation methods have been used to access to information. For general identification of the area, digital maps and Geographic Information System (GIS) were used. Identifying capabilities and limitation factors of the studied area was made through extensive field inspections and direct field observations. Bird species of the region were identified and statistics of the population of bird species were gathered. In this research, valid academic resources were used. According to field inspections and studies, 46 species of waterfowl birds and wader birds of Iran have been identified at this wetland. The results of this research showed that Ag-gol Wetland has a high potential regarding the variety of waterfowl and wader birds. Continuous study in order to determine the depth of wetland water in different time intervals to estimate the volume of wetland water during different seasons of the year is recommended.
Diversity of soil macrofauna on different pattern of sloping land agroforestry in Wonogiri, Central Java MARKANTIA ZARRA PERITIKA; SUGIYARTO SUGIYARTO; SUNARTO SUNARTO
Biodiversitas Journal of Biological Diversity Vol. 13 No. 3 (2012)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d130307

Abstract

Peritika MZ, Sugiyarto, Sunarto. 2012. Diversity of soil macrofauna on different pattern of sloping land agroforestry in Wonogiri, Central Java. Biodiversitas 13: 140-144. The purposes of this study were to determine the diversity level of soil macrofauna on different patterns of sloping land agroforestry, in Wonogiri District, Central Java, and to find out the relationship between environmental factorsand the level of soil macrofauna diversity. The study was conducted by sampling at three different patterns of agroforestry, namely: pattern of mixed agroforestry (PAC), pattern of teak agroforestry (PAJ), and the pattern of sengon agroforestry (PAS). The field sampling used two methods, namely pit fall traps to obtain above ground macrofauna, and hand sorting methods to obtain underground macrofauna, on land slope of 39%, 35%, and 27%. The data were collected to determine the diversity index of soil macrofauna; and theenvironmental factors were also measured. The relationship between environmental factors and the diversity index of soil macrofauna was presented in Pearson's correlation analysis. The results showed that the pattern of sloping land agroforestry in Wonogiri District, Central Java had different diversity index of soil macrofauna. The average diversity index of surface macrofauna was the PAC (0.710), PAS (0661), and PAJ (0.417). The average diversity index of underground macrofauna was the PAC (0.887), PAS (0.860), and PAJ (0.843). The diversity index of soil macrofauna in various patterns of sloping land agroforestry showed that there was a correlation with environmental factors.

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