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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 50 Documents
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Search results for , issue "vol. 25 no. 12 (2024)" : 50 Documents clear
Survey of mosquitoes species in Henda Village, Pulang Pisau District, Central Kalimantan, Indonesia in filariasis case area INDRIA AUGUSTINA; M. YUSUF ILHAM KURNIAWAN; NOPTA TRIAWAN; MUHAMMAD FACHRIZAL MANTA; NATHASYA RIZKYANA RIYADI; MUHAMMAD ANDREAN SYAHRIDHO; ARINI RATNASARI; MILA KARMILA; ARIF RAHMAN JABAL
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251225

Abstract

Abstract. Augustina I, Kurniawan MYI, Triawan N, Manta MF, Riyadi NR, Syahridho MA, Ratnasari A, Karmila M, Jabal AR. 2024. Survey of mosquitoes species in Henda Village, Pulang Pisau District, Central Kalimantan, Indonesia in filariasis case area. Biodiversitas 25: 4886-4893. Filariasis is a zoonotic disease found in tropical regions. One of the filariasis endemic areas is Henda Village, Pulang Pisau District, Central Kalimantan Province, Indonesia. Three cases of filariasis cases were identified in Henda Village. This study aimed to identify mosquito species that act as vectors in Henda Village. Mosquito samples were collected using human landing collection, resting collection, animal-baited traps, animal barrier screens, and light traps. A total of 650 mosquitoes were collected, including Culex quinquefasciatus (n=361), Mansonia bonneae (n=134), Mansonia uniformis (n=90), Aedes aegypti (n=46), Aedes albopictus (n=13), Coquillettidia crassipes (n=5), and Anopheles barbirostris (n=1). The human landing collection method caught the highest number of mosquitoes at 438 mosquitoes. Overall, the total number of mosquitoes obtained, the highest number of mosquitoes obtained was the species of Culex sp. was Cx. quinquefasciatus.
Lepidoptera diversity in Ndodang Forest, Ngawi, East Java, Indonesia SRI UTAMI; PAMELIA NURYATMAN; NURUL KUSUMA DEWI
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251213

Abstract

Abstract. Utami S, Nuryatman P, Dewi NK. 2024. Lepidoptera diversity in Ndodang Forest, Ngawi, East Java, Indonesia. Biodiversitas 25: 4772-4780. The Ndodang Ngawi Forest is characterized by many species of teak (Tectona grandis) and rosewood (Dalbergia latifolia) trees that grow there, but the richness of its flora and fauna has not been explored and identified. Therefore, this study aimed to analyze the diversity of Lepidoptera in Ndodang Ngawi Forest, East Java, Indonesia, and the physicochemical environmental factors affecting their presence. The experiment was conducted from March to May 2023, where Rhopalocera (butterfly) analysis was carried out using the pollard transect method. This approach periodically monitored the presence of butterfly and the sweep net technique was used as the sampling method. Heterocera (moth) analysis was carried out using a light trap technique determined by the purposive sampling method. A total of three study stations were set, namely the area in forest, edge, and riverbank areas. The results of the Lepidoptera study recorded 8 families, consisting of 37 species and 639 individuals, with Nymphalidae and Catopsilia pomona being the most prevalent, while Papilionidae family, Elymnias hypermnestra had 2 individuals. In addition to the influence of plant vegetation, the diversity of Lepidoptera species was also affected by environmental physicochemical factors. The air temperature of the Ndodang Forest with an average of 29.3OC, humidity of 65%RH, and light intensity of 3629 lux contributed to the survival of these species. Diversity data were processed using Microsoft Excel, including the Shannon-Wienner diversity, Evenness, and Simpson Dominance indices. Based on the analysis, the values obtained were categorized as medium (1<H'<3), indicating moderate diversity, species evenness was large (E> 0.6), and there were no dominating species (D < 0.5). Lepidoptera diversity in the Ndodang Forest is in the medium category. The evenness index shows the even distribution of the population in the Ndodang Forest area, so that the dominance index is relatively low in this area or there is no dominance of certain types of butterfly species. The diversity of Lepidoptera species is influenced by the presence of vegetation which is a source of food and also environmental physico-chemical factors such as air temperature, light intensity and air humidity. The more and more diverse types of vegetation that provide food sources, the greater the diversity of Lepidoptera.
Genetic variability of IGF1 and IGF2 and correlation to body weight in Kedu chicken of Indonesia ROSIDI ROSIDI; IMAM SUSWOYO; SIGIT MUGIYONO; ISMOYOWATI ISMOYOWATI; ELLY TUGIYANTI
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251220

Abstract

Abstract. Rosidi, Suswoyo I, Mugiyono S, Ismoyowati, Tugiyanti E. 2024. Genetic variability of IGF1 and IGF2 and correlation to body weight in Kedu chicken of Indonesia. Biodiversitas 25: 4846-4852. This study aims to examine differences in genetic variability using Insulin Growth Factors (IGF) to estimate the body weight of selected Kedu chickens. A total sample 37 chickens consist of 10 White Kedu, 10 Cemani Kedu, 10 Red Kedu, 5 Black Tongue Kedu, 1 Blorok Kedu, and 1 Lurik Walik Kedu. Next, their blood is taken from the chicken samples and analyzed in the laboratory. The identification of the IGF-1 and IGF-2 genes polymorphism was done by PCR and sequencing methods. The results showed two Single Nucleotide Polymorphism (SNP) of IGF1: c.166 T>A and c.169 A>G and IGF2: c.248 G>A and c.540 C>T. The frequency of genotypes was informed on GG, GA and AA with values of 0.71, 0.1 and 0.19, respectively. The base pair of 540 showed the existence of genotypes CC, CT and TT with values of 0.28, 0.62, and 0.1 respectively. The value of heterozygosity obtained at each base pair was c. 248 and the heterozygosity value was 0.3648, while the heterozygosity value of c. 540 was 0.4838. The correlation analysis showed that at c. 248 had a value of 0.57, which was relatively greater than that at c. 540, namely 0.15. The c. 248 genotypes of AA had greater body weight than the rest. In conclusion, AA genotypes in the IGF-1 and IGF-2 genes had a relatively high body weight compared to that of other genotypes, but IGF-1 had a relatively low association (correlation), so incompatible as a marker for future selection. An IGF marker can be used to estimate the body weight of the upcoming offspring of Kedu chickens.
Species diversity and distribution of Odonata in Brgy. Rogongon, Iligan City, Philippines DENMAR D. MAGSALAY; OLGA M. NUÑEZA; REAGAN JOSEPH T. VILLANUEVA
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251228

Abstract

Abstract. Magsalay DD, Nuñeza OM, Villanueva RJT. 2024. Species diversity and distribution of Odonata in Brgy. Rogongon, Iligan City, Philippines. Biodiversitas 25: 4909-4919. Odonata is an insect order often utilized as a bioindicator to help determine the health of an ecosystem. The Philippine Odonata is recognized to have high diversity and endemicity, especially the suborder Zygoptera, since its limited range and its habitat distribution are low. This study was conducted to provide baseline information on the species diversity and distribution of Odonata in Brgy. Rogongon, Iligan City, Philippines. The research employed an 'opportunistic method', a strategy that involves collecting data based on the availability of the species, using sweep nets as a collection tool. Therefore, 35 species belonging to 10 families under 25 genera were found. Results showed that the most abundant family is Libellulidae (S = 9), followed by the family Platycnemididae (S = 8). All the study sites showed moderate diversity (H' = 1.73 - 2.75). On the other hand, one endangered, three vulnerable, and two near-threatened Odonata species were recorded in this study. Moreover, the distribution trend of Odonata species along an elevational gradient in the study areas is that species richness and endemism increase until Site 2 (730 to 787 masl) and then decreases as the elevation increases. Factors such as habitat structure and level of disturbances could be the reason for such a trend. Environmental factors such as air temperature, relative humidity, water temperature, water pH, and streamflow affect the distribution and abundance of the Odonata based on the canonical correspondence analysis. Any alteration in the habitat in each study site would be a threat to the population of Odonata. Thus, there is a need to protect the remaining forest of Iligan City, especially since endangered and vulnerable species are present.
DNA barcoding of intertidal barnacles as potential bioindicators of microplastic pollution in Seribu Islands and Jakarta Bay, Indonesia MIFTAKHUL SEFTI RAUFANDA; ROMANUS EDY PRABOWO; AGUS NURYANTO
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251203

Abstract

Abstract. Raufanda MS, Prabowo RE, Nuryanto A. 2024. DNA barcoding of intertidal barnacles as potential bioindicators of microplastic pollution in Seribu Islands and Jakarta Bay, Indonesia. Biodiversitas 25: 4664-4676. Barnacles, with their sessile nature and filter-feeding behavior, hold significant potential as bioindicators of microplastic pollution. Due to the diverse morphotypes across barnacle species, DNA barcoding is a reliable technique for accurate taxonomic identification. This research aimed to determine intertidal barnacle species and identify potential bioindicators of microplastic pollution in Seribu Islands and Jakarta Bay, Indonesia. Barnacle samples were collected from seven locations using purposive sampling. Microplastic characteristics were analyzed visually and polymer-type testing was performed using Attenuated Total Reflectance-Fourier Transform Infrared Spectroscopy (ATR-FTIR). Data was analyzed using Pearson correlation and bioconcentration factors to determine potential microplastic bioindicator species based on three criteria. The significance level was set at p<0.05 and all statistical analyses were performed using SPSS. Four species of intertidal barnacles were identified in Seribu Islands and Jakarta Bay, namely Amphibalanus amphitrite, Striatobalanus amaryllis, Amphibalanus zhujiangensis, and Newmanella radiata. DNA barcoding was used to determine the first three species, while morphological analysis identified the fourth species. The microplastic particle count varied among the species, with A. amphitrite showing the highest concentration at 42-53 particles/g. Due to its clear taxonomy, ease of surveying, and wide distribution, A. amphitrite has strong potential as a bioindicator of microplastic pollution, as it can accumulate more than other species.
Rare occurrence of shiitake dermatitis in Indonesia: A case report ARYANI ADJI; SYLVIA TAN; MICHAEL WAROUW; GABRIELLA K. LIONG; FAUZAN RAMZY WALID; PAULUS MARIO CHRISTOPHER
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251215

Abstract

Abstract. Adji A, Tan S, Warouw M, Liong GK, Walid FR, Christopher PM. 2024. Rare occurrence of shiitake dermatitis in Indonesia: A case report. Biodiversitas 25: 4790-4795. The present study identified shiitake dermatitis as a unique dermatological manifestation of undercooked shiitake mushrooms. However, this discovery has not yet been reported in Indonesia. Shiitake mushrooms contain lentinan, a natural polysaccharide ?-D-glucan polymer. Lentinan is considered a pathogen-associated molecular pattern that may trigger both innate and adaptive immunological responses by binding on pattern recognition receptors on immune cells. The binding of lentinan to its receptors activates many signaling pathways, eliciting an enhanced innate immune response, which may manifest as shiitake dermatitis. A 48-year-old Caucasian man of German nationality presented with a 3-day history of an extensive, minimally pruritic skin eruption of linear groups of erythematous papules in a flagellate pattern on both sides of the abdomen and mainly on his back. The patient denied any previous history of scratching, exposure to new/routine medications, supplements, topical products, animals, plants, recent travel, or outdoor activities. Additionally, constitutional symptoms were denied. Based on the clinical results and the exclusion of differential diagnoses, a diagnosis of shiitake dermatitis was established. The patient was prescribed symptomatic treatment consisting of oral and topical corticosteroids and an oral antihistamine, which yielded a significant improvement in response. This is the first case of shiitake dermatitis to be reported in Indonesia.
Molecular detection of zoonotic Spirometra (Cestoda: Diphyllobothriidae) in Javan-spitting cobra (Naja sputatrix) snakes in Indonesia ADITYA YUDHANA; ANJANI MARISA KARTIKASARI; RYANKA EDILA; RATIH NOVITA PRAJA; JONATHAN MARK HAMONANGAN; APRIL HARI WARDHANA; MUFASIRIN MUFASIRIN; SETIAWAN KOESDARTO
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251221

Abstract

Abstract. Yudhana A, Kartikasari AM, Edila R, Praja RN, Hamonangan JM, Wardhana AH, Mufasirin, Koesdarto S. 2024. Molecular detection of zoonotic Spirometra (Cestoda: Diphyllobothriidae) in Javan-spitting cobra (Naja sputatrix) snakes in Indonesia. Biodiversitas 25: 4853-4859. Sparganosis, a neglected disease caused by the larvae of Spirometra tapeworms, is considered a serious threat to public health worldwide. However, data on snake prevalence or molecular study of sparganosis in snakes still needs to be improved. In this study, we aim to investigate the prevalence of plerocercoids (spargana) infection in wild-caught Javan-spitting cobra (Naja sputatrix) snakes in Banyuwangi, East Java Province, Indonesia, using morphological and molecular identification methods. A total of 70 Javan-spitting cobra snakes were purchased from local sellers in Banyuwangi, Indonesia. Morphological identification was conducted on a plerocercoids collected from various predilection sites. Moreover, molecular identification was done by polymerase chain the Polymerase Chain reaction (PCR) method and analyzed using the mitochondrial cytochrome c oxidase subunit 1 (cox1) gene. Plerocercoids were identified in 70 snakes, with the prevalence rate recorded at 60%. A total of 231 plerocercoids were collected and divided into 184 (79.65%) in muscular and 47 (20.34%) in subcutaneous tissues. The plerocercoids were macroscopically identified as thin, flat, and white colored with ribbon-like structure and were 2-14 cm long and 2-8 mm wide. Microscopic examination of plerocercoids using the carmine staining method revealed a mouth-like shape anterior side. Furthermore, PCR analysis results reveal that 5 plerocercoid specimens were identified as Spirometra, and each sample shows positive bands at 467 bp. To our knowledge, this study is the first report of Spirometra in species of Indonesian endemic snake primarily on Java Island. These findings constitute a serious potential risk of human sparganosis transmission in Indonesia because wild-caught Javan-spitting cobra snakes are locally used as human food.
Species diversity of aquatic plants in Anggerper Swamp in Merauke District, South Papua Province, Indonesia SENDY LELY MERLY; ROSA D. PANGARIBUAN; YAKOBUS ERIKSON KANDO; LINDON R. PANE; JEREMIAS R. TUHUMENA
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251207

Abstract

Abstract. Merly SL, Pangaribuan RD, Kando YE, Pane LR, Tuhumena JR. 2024. Species diversity of aquatic plants in Anggerper Swamp in Merauke District, South Papua Province, Indonesia. Biodiversitas 25: 4712-4721. The aquatic plants in Anggerper Swamp, Merauke District, South Papua Province, Indonesia have never been studied, causing the development of their potential is still insufficient. This research aimed to identify species diversity of aquatic plants, through a species identification approach, Shannon-Weaver Species Diversity Index (H’), Evenness Index (E), Dominance Index (D), and Important Value Index (IVI). Two methods used in this study are cruising survey and purposive sampling method using transect quadrant. There are two research stations with 120 quadrants measuring 1 x 1m. This study successfully identified 14 aquatic plant species from 9 families. Moreover, the majority of these aquatic plants are known as emergent and introduced plants. In Station I, total individuals reached 6,531 with 10 species and in Station II reached 2,576 individuals with 12 species. The diversity index for both stations tends to moderate, 1.92 in Station I and 2.53 in Station II, successively. The evenness index is stable with high uniformity, where Station I is 0.83 and Station II is 0.95, respectively. The dominance index for both stations indicates low dominance (0.21 in Station I and 0.10 in Station II). The highest aquatic plants’ IVI belongs to Nymphaea nouchali (65.66%) and Urochloa mutica (63.16%).
LC-MS/MS analysis and antioxidant activity of ethanol fraction of Aglaonema modestum leaves SARONOM SILABAN; BAJOKA NAINGGOLAN; JUANDI IKHWAN; NUR HARLIANANDA; MURNIATY SIMORANGKIR
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251211

Abstract

Abstract. Silaban S, Nainggolan B, Ikhwan J, Harliananda N, Simorangkir M. 2024. LC-MS/MS analysis and antioxidant activity of ethanol fraction of Aglaonema modestum leaves. Biodiversitas 25: 4756-4762. Free radicals are one of the triggers of various diseases. Excessive free radicals have the potential to cause oxidative stress, such as diabetes, heart disease, Alzheimer's, and Parkinson's disease. Antioxidants can be used to prevent free radicals. Synthetic antioxidants have unnecessary side effects, and natural antioxidants can be a safer alternative. Natural antioxidants can come from plants, which contain phenolic compounds in the form of flavonoids. Aglaonema modestum, with the local name simargaolgaol, contains this compound. This plant is often found in Barus, North Sumatra, Indonesia, and is usually used by the community as traditional medicine for internal and external wounds. This study aims to identify the potential antioxidant activity of the leaves ethanol fractions of A. modestum. Purification was done using the standard column chromatography method, antioxidant activity analysis using the 2,2-Diphenyl-1-picrylhydrazyl (DPPH) method with vitamin C as a control, and fraction compound analysis using LC-MS/MS. Antioxidant activity value (IC50) of ethanol fraction of A. modestum consecutively at 30.953 ppm (very strong), 109.809 ppm (moderate), and vitamin C with an IC50 value of 2.304 ppm (very strong). The results of LC-MS/MS analysis of the ethanol fraction identified three compounds, namely Cadsurenin K (RT 5.91 minutes), Methyl ophiopogonone B (RT 6.37 minutes), and Schizandrin C (RT 7.30 minutes). The ethanol fraction of A. modestum leaves has alternative potential as a natural antioxidant.
Occurement assessment of helminth parasites in Euthynnus affinis from Banten, Indonesia FORCEP RIO INDARYANTO; MOHAMMAD MUKHLIS KAMAL; NURLISA A. BUTET; RIDWAN AFFANDI; RISA TIURIA
Biodiversitas Journal of Biological Diversity Vol. 25 No. 12 (2024)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d251235

Abstract

Abstract. Indaryanto FR, Kamal MK, Butet NA, Affandi R, Tiuria R. 2024. Occurement assessment of helminth parasites in Euthynnus affinis from Banten, Indonesia. Biodiversitas 25: 4978-4985. As an economically valuable fish, Euthynnus affinis requires regular surveillance and assessment of the prevalence of helminth parasitic infestation in Banten waters, Indonesia. In the districts of Cituis-Tangerang (North Banten), Labuan-Pandeglang (West Banten), and Binuangeun-Lebak (South Banten) in the waters of Banten, E. affinis were collected in November 2023 to January 2024. Seven species of helminth parasitic were identified to infect E. affinis in Banten: Anisakis typica (intensity 1.17; prevalence 14.65%), Tentacularia sp. (intensity 1; prevalence 0.64%), Dinurus sp. (intensity 17.75; prevalence 7.64%), Didymozoid sp. (intensity 2.25; Prevalence 7.64%), Rhadinorhynchus sp. (intensity 24.86; prevalence 87.90%), and Acanthocephalus sp. (intensity 24.86; prevalence 87.90%) are the seven species of helminth parasitic that infect E. affinis in Banten. The overall prevalence of helminth parasitic infection was categorized as moderately prevalence (89.17%) with a moderate intensity (27.32). Despite severe infestations of distinct helminth parasitic species, the mean condition factor (K) values for parasitized and non-parasitized fish did not differ appreciably. Positive allometric growth was observed in both parasitized and non-parasitic fish. Helminth parasitic infection exceeding 80 individuals/fish significantly affects the Gonado Somatic Index (GSI). Fish measuring 25-30 cm in total length were found to be susceptible to helminth parasitic infection; however, there was no correlation between fish length and parasite abundance (r2 = 0.0223). Males had a higher infection rate compared to female fish. There was no statistically significant difference in the abundance of parasites across the three locations. The host's diet was found to affect the parasitic infection. The greatest diversity of parasite species was discovered in Labuan, West Banten.

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