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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Genetic diversity of Falcataria moluccana and its relationship to the resistance of gall rust disease NEO ENDRA LELANA; SURYO WIYONO; GIYANTO GIYANTO; ISKANDAR Z. SIREGAR
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190102

Abstract

Lelana Ne, Wiyono S, Giyanto, Siregar IZ. 2018. Genetic diversity of Falcataria moluccana and its relationship to the resistance of gall rust disease. Biodiversitas 19: 12-17. The use of cultivars that are resistant to a particular disease is one strategy that could mitigate the incidence of gall rust disease on Falcataria moluccana. Previous studies on the genetic diversity of F. moluccana did not attempt to link that genetic diversity to gall rust disease resistance. This research was carried out using RAPD analysis to determine the preliminary information on the association between different markers and the resistance to gall rust disease. The analysis evaluated a total of 20 pairs of healthy and infected F. moluccana trees that were classified based on their disease severity level. The RAPD primers used in this study were as follows: OPA-05, OPA-08, OPA-10, OPA-13, OPA-18, OPB-07, OPD-13, OPF-02, and OPG-05. The results showed that each RAPD primer produced a varying number of polymorphic bands, ranging from 3 to 12 bands, with a total of 80 polymorphic bands. Despite the number of loci analyzed, however, no specific polymorphic bands were found that could distinguish between healthy and diseased trees. This was supported by principal component analysis, which showed that healthy and diseased populations were not distributed separately. The structure analysis also showed that the healthy and diseased populations were not different.
Diversity and abundance of polyisoprenoid composition in coastal plant species from North Sumatra, Indonesia MOHAMMAD BASYUNI; RIDHA WATI; HIROSHI SAGAMI; SUMARDI SUMARDI; SHIGEYUKI BABA; HIROSUKE OKU
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190101

Abstract

Basyuni M, Wati R, Sagami H, Sumardi, Baba S, Oku H. 2018. Diversity and abundance of polyisoprenoid composition in plant species from North Sumatra, Indonesia. Biodiversitas 19: 1-11. The distribution and abundance of polyprenols (pol) and dolichols (dol) in the leaves and roots of fourteen coastal plants from North Sumatra, Indonesia were analysed using two-dimensional thin layer chromatography. In the leaves, with respect to the distribution of pol and dol were detected and categorized into three-types. In type-I, the predominance of dol over pol, was observed in Barringtonia asiatica, Calophyllum inophyllum, Pandanus odoratissimus, and Stachytarpheta jamaicensis. In type-II, the presence of both pol and dol, was observed in Casuarina equisetifolia, Melastoma candidum, Morinda citrifolia, Scyphiphora hydrophyllacea, Sesuvium portulacastrum and Terminalia catappa. In type-III, the predominance of pol over dol, was observed in Acacia auriculiformis, Hibiscus tiliaceus, Ricinus communis, and Pongamia pinnata. However, in the roots, a type-I distribution was observed in eleven species, while three species, A. auriculiformis, M. candidum, and M. citrifolia, corresponded to a type-II distribution instead of type-III. The diversity of polyisoprenoid composition in the leaves was noted, whereas 79% of root tissues indicated that dol occur more abundantly than pol. The range of the contents of polysioprenoid was 12-300 mg/g dw. The present study indicated that pol and dol could be useful in the classification of mangroves and other coastal forests and in phylogenetic studies. The diversity and presence of polyisoprenoids in coastal plants suggested that plant polyisoprenoids are chemotaxonomically important.
Tree standing dynamics after 30 years in a secondary forest of Bali, Indonesia MUSTAID SIREGAR; NI KADEK EROSI UNDAHARTA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190104

Abstract

Siregar M, Undaharta NKE. 2018. Tree standing dynamics after 30 years in a secondary forest of Bali, Indonesia. Biodiversitas 19: 22-30. Tree standing dynamics in 0.5 ha plot after 30 years in Bukit Tapak secondary forests, Batukahu Nature Reserve, Province 0f Bali was studied by using plot method. The results showed that the tree species richness is same, 33 species, but there are six species disappear and be replaced by another species as a newcomer. Eight species persist as major species based on the importance value, namely: Homalanthus giganteus, Vernonia arborea, Dendrocnide stimulans, Meliosma angustifolia, Saurauia reinwardtiana, Trema orientalis, Macaranga triloba and Polyosma integrifolia. Tree density decreased 19.7%, but the total basal area increased 12.2% with an average basal area per tree were also increased by 39.7%. Shannon diversity index (H`) and Equitability index (E) was increased in 2016. Forests in the plot categorized as old secondary forest are still in the process of maturation toward the primary forest. Species predicted would disappear with a succession of increasingly advanced process is Trema orientalis, while the predicted to survive for much longer are Homalanthus giganteus, Acronichia trifoliolata, Meliosma angustifolia, Polyosma integrifolia, Saurauia reinwardtiana and Dendrocnide stimulans.
Detection of Ace-1 gene with insecticides resistance in Aedes aegypti populations from DHF-endemic areas in Padang, Indonesia HASMIWATI HASMIWATI; SELFI RENITA RUSJDI; EKA NOFITA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190105

Abstract

Hasmiwati, Rusjdi SR, Nofita E. 2018. Detection of Ace-1 gene with insecticides resistance in Aedes aegypti populations from DHF-endemic areas in Padang, Indonesia. Biodiversitas 19: 31-36. Aedes aegypti is distributed widely in West Sumatra as a primary vector of Dengue hemorrhagic fever, especially in Padang City. Synthetic insecticide control is one currently used method to prevent mosquito-borne diseases. The extensive, long-term application of Temephos along with inappropriate dosages, have resulted in the development of resistance in Ae. aegypti populations. Mutation of the Ace-1 gene, encoding an acetyl cholinesterase, is one of the mechanisms that confer resistance to organophosphate (OP). The Temephos resistance status of Ae. aegypti in Padang city has not yet been studied. This study aimed to investigate the resistance status of Ae. aegypti and identify any possible mutation (s) of the Ace-1 gene in Padang city. Ae. aegypti samples were collected in five population in Padang city (Jati (JT), Gunung Pangilun (GP), Lubuk Minturun (LM), Korong Gadang (KG), and Bandar Buat (BB)). The larval susceptibility to Temephos was tested by larval bioassays with Temephos pestanal at 0.02 mg/L dosages. Larval susceptibility was determined by mortality percentage values. The relationship between Ace-1 genotypes and the resistant phenotype was analyzed by percentage of genotype frequency. Out of five populations, assessed by larval bioassays, JT and GP were resistant to Temephos; LM, KG, and BB were tolerant. A total of 50 individuals from larval bioassays were genotyped for Ace-1 gene. Our findings showed that Ace-1 was 495 bp in length. Mutation was not found in the G119S location but in the T506T location. Three alleles in T506T location were detected, including a wild type allele, TT (65.21%), and two mutant alleles, TA (26.08%), AA (8.69%). The use of Temephos showed that some Ae. aegypti populations were resistant, others were tolerant, but no population was vulnerable to Temephos. A novel mutation was detected as substitution in T506T location (ACT>ACA).
Effects of bacterial endophytes from potato roots and tubers on potato cyst nematode (Globodera rostochiensis) NOOR ISTIFADAH; NURHAYATI PRATAMA; SYAHRIZAL TAQWIM; TOTO SUNARTO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190108

Abstract

Istifadah N, Pratama N, Taqwim S, Sunarto T. 2018. Effects of bacterial endophytes from potato roots and tubers on potato cyst nematode (Globodera rostochiensis). Biodiversitas 19: 47-51. Bacterial endophytes are bacteria that inhabit plant tissues without causing any diseases. The endophytes existence may have negative, neutral, or positive effects on the host plants. This paper discusses the effects of bacterial endophytes isolated from potato roots and tubers on potato growth and their abilities to suppress potato cyst nematode, Globodera rostochiensis. The bacterial endophytes were isolated from roots and tubers of potatoes obtained from six plantation areas in West Java. The endophyte isolates were examined for their effects on potato growth. The non-pathogenic isolates were tested for their abilities to suppress G. rostochiensis in vitro and in potato plants. The results showed that from 88 bacterial endophyte isolates obtained, 13 isolates caused rot in potato seed pieces, 22 isolates inhibited the potato growth, while, 2 isolates increased the growth, and as many as 51 isolates did not influence the growth. The in vitro test using the isolate culture filtrate revealed that there were seven isolates that caused mortality of G. rostochiensis juvenile-2 by 67.5-97.7%. These isolates, however, were not effective in damaging the nematode eggs. In the greenhouse experiment, the bacterial endophyte isolates suppressed the number of cysts by 51.7-65.4% and that of the juvenile-2 of G. rostochiensis by 48.6-76.4%.
Short Communication: Javan Leopard Cat (Prionailurus bengalensis javanensis Desmarest, 1816) in the Cisokan non-conservation forest areas, Cianjur, West Java, Indonesia SYA SYA SHANIDA; RUHYAT PARTASASMITA; TEGUH HUSODO; PARIKESIT PARIKESIT; ERRI NOVIAR MEGANTARA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190106

Abstract

Shanidah SS, Partasasmita R, Hudoso T. Parikesit, Meganatara EN. 2018. Short Communication: Javan Leopard Cat (Prionailurus bengalensis javanensis Desmarest, 1816) in the Cisokan non-conservation forest areas, Cianjur, West Java, Indonesia. Biodiversitas 19: 37-41. Javan Leopard Cat (Prionailurus bengalensis javanensis Desmarest, 1816) in the Cisokan non-conservation forest areas, Cianjur, West Java, Indonesia. Biodiversitas 19: xx, xxx.There is no accurate data about the number of leopard individuals in Java Island in both conservation and non-conservation areas. Besides, human continue to deforestation for the necessities of life, such as agriculture, plantation, etc. Therefore, it is important to research about the existence of leopard cat in Cisokan of Cianjur Regency. The aim of this research is to investigate evidence of the leopard cat’s existence, encounter rate of leopard cat and estimation of leopard cat individual in the non-conservation forest areas, Cisokan, Cianjur. Indirect observation sign survey and direct observation with camera trap were carried out to find evidence of the existence of leopard cat (feces and footprint). The results of the study showed that the evidence of leopard cat’s existence are 6 footprints, 27 feces, and 1 individual which was able to observe. The encounter with camera traps was 29.16 independent detections /100 camera days, resulting in 7-12 estimated individuals.
Short Communication: The existence of Javan Leopard (Panthera pardus melas Cuvier, 1809) in the non-conservation forest areas of Cisokan, Cianjur, West Java, Indonesia SYA SYA SHANIDA; RUHYAT PARTASASMITA; TEGUH HUSODO; PARIKESIT PARIKESIT; PUPUT FEBRIANTO; ERRI NOVIAR MEGANTARA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190107

Abstract

Shanidah SS, Partasasmita P, Hudoso T. Parikesit, Febriato P, Meganatara EN. 2018. Short Communication: The existence of Javan Leopard (Panthera pardus melas Cuvier, 1809) in the non-conservation forest areas of Cisokan, Cianjur, West Java, Indonesia. Biodiversitas 19: 42-46. There is no accurate data about the number of individual leopards in Java Island in both conservation and non-conservation areas. In West Java, deforestation for plantations and agriculture is widespread, although it is unknown if leopard uses these human-altered habitats. Therefore, it is important to research the existence of leopards in Non-Conservation Forest Area (NCFA) in western Java, Indonesia. The aim of this research is to investigate: (i) evidence of leopard’s existence (ii) encounter rate of leopard’s existence; and (iii) estimation of individual leopards in NCFA, Cisokan, Cianjur, and West Java. Indirect data were obtained from sign surveys for feces, scrapes, footprints, and residual prey. We also obtained direct data with camera traps. We found 13 footprints, 2 feces, 4 scrapes, and 2 direct encounters by observers. The camera trap data recorded 12 independent leopard events and 8 leopard photos/100 trap days. Estimated number of leopards in Cisokan ranged 1-3 individuals.
The fish diversity of mangrove waters in Lombok Island, West Nusa Tenggara, Indonesia GEMA WAHYUDEWANTORO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190112

Abstract

Wahyudewantoro G. 2018. The fish diversity of mangrove waters in Lombok Island, West Nusa Tenggara, Indonesia. Biodiversitas 19: 71-76. Lombok Island’s waters are the main gateway of the mass water flow from the Pacific and Indian Oceans. Therefore, it is suspected the fish species that inhabit them is very diverse. The aim of the research was to reveal the diversity of mangrove fish species, with a case study in West Lombok and Central Lombok. Fishes were caught using cast net with mesh sizes of 1.5 cm and 2.5 cm, gill net with mesh sizes of ¾ inch, 1.5 inch and 2 inches. This research found 38 species belonging to 28 genera and 20 families. Oryzias javanicus and Periopthalmus argentilineatus were distributed at all research stations.Species diversity index (H) of fish was in the range of 2.618 to 3.072, evenness index (E) 0.803 to 0.950 and species richness index (d) from 4.328 to 6.206. Based on the similarity of fish species that exist in each station, the species of fish in station IV were different from those of other stations.
Mutations causing hemophilia B in Algeria: Identification of two novel mutations of the factor 9 gene ZIDANI ABLA; YAHIA MOULOUD; EL MAHMOUDI HEJER; GOUIDER EMNA; ABDI MERIEM; OUARHLENT YAMINA; SALHI NAOUEL
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190109

Abstract

Abla Z, Mouloud Y, Hejer El, Emna G, Abdi Meriem A, Ouarhlent Yamina O, Naouel S. 2018. Mutations causing hemophilia B in Algeria: Identification of two novel mutations of the factor 9 gene. Biodiversitas 19: 52-58. Hemophilia B (HB) (also known as Christmas disease; Christmas is the family name of the first patient.) is an X linked recessive hemorrhagic disorder caused by mutations in factor 9 (F9: is used for the gene) gene that leads to deficient or defective coagulation factor IX (FIX: is used for the protein). The variable phenotype of HB results from wide range of mutations affecting the F9 gene. Our study was aimed at molecular analysis of HB to identify the causative mutation in known patients with HB in a part of Algeria. For genotyping, polymerase chain reaction (PCR) and direct sequencing have been applied to all the essential regions of the F9 gene from 39 Algerian HB patients belonging to 13 unrelated families. We identified 10 different mutations. The identified mutations included 1 duplication and 9 substitutions. In total 9 point mutations were identified, of which 5 are located in exon 8, the hotspot region in the F9 gene. Among the 10 mutations, 2 are novel and not deposited in database sites nor described in recently published articles. The results of this study emphasize the heterogeneity of HB. In summary, our preliminary results will be used to build an Algerian mutation database which would facilitate genetic counseling.
Short Communication: Abundance and diversity of plant parasitic nematodes associated with BP 308 and BP 42 clones of robusta coffee in Java, Indonesia MUTALA’LIAH MUTALA’LIAH; SIWI INDARTI; NUGROHO SUSETYA PUTRA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 1 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190111

Abstract

Mutala’liah, Indarti S, Putra NS. 2018. Abundance and diversity of plant parasitic nematodes associated with BP 308 and BP 42 clones of robusta coffee in Java, Indonesia. Biodiversitas 19: xxxx. Plant parasitic nematodes are an important limiting factor in the productivity of coffee plantations. Clone resistance and soil texture influence the severity of plant infestation by parasitic nematodes. The aim of this research was to determine the diversity of plant parasitic nematodes in two clone of Robusta coffee (BP 308 and BP 42) on soils with different contents of sand. The research was carried out in Malangsari Field (East Java), Getas Field (Central Java) and Candiroto Field (Central Java). Nematodes were extracted from soil samples by the decanting method using a whitehead tray, while roots sample by the funnel spray method with a ‘mistifier’. Differences in diversity of nematode genera between clone and location combinations were analyzed by ANOVA. The results showed that there were five genera associated with Robusta coffee, i.e. Pratylenchus, Helicotylenchus, Radopholus, Rotylenchulus, and Meloidogyne. With clone BP 308 at the Malangsari Field site where soil contained 31.3 % sand, Pratylenchus was the most abundant genus i.e. 6 nematodes/100 mL soil. On the same clone, BP 308, at the Getas Field site where soil contained 26.9 % sand, Meloidogyne was the most abundant i.e. 14.4 nematodes/10 g roots. With clone BP 42 at the Candiroto Field site with 25.5 % sand in the soil, Pratylenchus was highly abundant i.e. 60 nematodes/10 g roots.

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