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BIOTROPIA - The Southeast Asian Journal of Tropical Biology

biotropia
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Published by Southeast Asian Regional Centre for Tropical Biology

ISSN : 02156334 EISSN : 1907770X DOI : http://dx.doi.org/10.11598/btb

Core Subject : Health, Science, Agriculture,

Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Immunology & microbiology Veterinary

BIOTROPIA, The Southeast Asian Journal of Tropical Biology, is a scientific publication of the Southeast Asian Ministers of Education Organization (SEAMEO) – Southeast Asian Regional Center for Tropical Biology (BIOTROP). It publishes articles in the broad areas of tropical ecosystems and environmental impacts, biodiversity conservation and sustainable development and biotechnology.

Arjuna Subject : Ilmu Pertanian dan Biologi (Semua) - Ilmu Pertanian dan Biologi (Lain-Lain)

Articles 10 Documents

Search results for , issue "Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020" : 10 Documents clear

GROWTH, PHOTOSYNTHESIS AND PROLINE ACCUMULATION OF METAL-ACCUMULATOR WEEDS Hamim Hamim; Rani Apriani; Deden Saprudin; Yohana C Sulistyaningsih
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

Heavy metals especially lead and mercury contaminant have been spread widely because of their intensive utilization in industry or extraction in mining area which threaten our environment. The experiment aimed to examine the growth and some physiological parameters of five metal-accumulator weed species in response to mercury (Hg) and lead (Pb) treatment. Five weed species (Branchiaria mutica, Cyperus kyllingia, Ipomea aquatica, Mikania micrantha, and Paspalum conjugatum) were grown in water culture using half strength Hoaglandâ€™s solution and subjected to Hg(NO3)2 and PB(NO3)2 at 0, Â 0.25 and 0.5 mM for 3 weeks. The growth, photosynthesis, lipid peroxidation and proline content were observed during the treatments. The result showed that both Hg and Pb decreased growth significantly, but the decrease was far higher in Hg than in Pb treatments. Hg treatment reduced photosynthetic rate dramatically under different photosynthetic photon flux density suggesting that heavy metal Hg until 0.5 mM caused the damage of photosynthetic apparatus almost all species except in I. aquatica. Hg and Pb treatment caused dramatic increase in leaf MDA content, which was associated with the decrease of chlorophyll content significantly. Almost all the species were tolerant to Pb treatment up to 0.5 mM except M. micrantha, while only C. kyllingia and I. aquatica were tolerant to Hg treatment up to 0.5 mM. Only Hg treatment and not Pb that induced higher proline content in the leaves of threated plants without clear pattern of the increment among the species suggesting that proline may have a role as alarm stress rather than tolerant indicator.

PREVENTION METHODS AGAINST Aeromonas hydrophila and Pseudomonas fluorescens INFECTION IN TILAPIA Esti Handayani Hardi; Rudi Agung Nugroho; Irawan Wijaya Kusuma; Wiwin Suwinarti; Ryan Anjani; Aziza Aziza
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

This research evaluated a method involving provision of a concoction of Boesenbergia pandurata, Solanum ferox dan Zingimber zerumbet extracts for pathogen prevention in tilapia. The concentration of each extract was 600 ppm of Boesenbergia pandurata/BP, 900 ppm of Solanum ferox/SF and 200 ppm of Zingimber zerumbet/ZZ. The examination was performed by issuing two combinations of extracts (SF:BP, SF:ZZ) against Aeromonas hydrophila and Pseudomonas fluorescens (105 CFUmL-1). Preventive trials were carried out by providing a concoction of extracts through intraperitoneal injection (0.1 mL/fish) in tilapia (15Â±2 g) and the immersion method was performed by bathing the fish in the extracts for 20 minutes, with pathogen challenging during the following 24 h being carried out. The composition of the used extract was by SF60:ZZ40; SF50:ZZ50; BP90:SF10; BP50:SF50; and fish without being given the extract. Haematology and immunology parameters were observed at the 4th week after challanges with pathogenic bacteria. The number of white blood cells (WBCs) increased significantly (P <0.05) compared to controls without extract, with a similar increase observed for red blood cell (RBCs), but heamatocrit (Ht) and hemoglobin (Hb) values did not significantly increase compared to control. Phagocytic index, respiratory burst and lysozyme activities also experienced a significant increase in fish fed with combined extracts compared to controls. The numbers of pathogenic bacteria in the body of the fish given extract were also lower than the control and significantly different at the 4th week. The results of this study indicate that giving combined extracts of SF50:ZZ50 and BP90:SF10 provides the best protection (RPS) against infection of A. hydrophila and P. fluorescent by injection of 100%. This study indicates that providing combined extracts by injection and immersion in the ratio of SF50:ZZ50 has a positive effect in increasing the non-specific immune system of tilapia and increasing protection against bacterial infections.

MONITORING of Cacatua sulphurea abbotti POPULATION IN MASAKAMBING ISLAND, INDONESIA Dudi Nandika; Yeni Aryati Mulyani; Dewi Malia Prawiradilaga; Dwi Agustina
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

The Critically Endangered Cacatua sulphurea abbotti is a unique subspecies of cockatoo, endemic to a single tiny Masakambing Island in Indonesia. Data procurement on the status and distribution of their wild population is necessarily urgent in order to determine the best conservation strategy for this species. Data were collected annually from 2008-2018 by a direct roost count method in a roosting tree. Only 10 cockatoos were recorded in 2008, but the number continually increased up to 22 birds in 2018 (42.86% increase in a decade). The population was distributed in about 71% of the total size of the island, concentrated in the north-western part with a density of 1.56 (~ 2 birds/km2) in 2008 which raised up to 3.44 (~ 3 birds/km2) in 2018. The zero trapping policy enforced by the local government was probably effective in preventing the population decline, although the population is still vulnerable due to nesting failure, presumably low genetic quality and habitat destruction.Â

HYPER-SOLUBILIZING TRICALCIUM PHOSPHATE MUTANTS OF Klebsiella sp. GMD08 Nur Fitriana Ariyanti; Jaka Widada; Siti Subandiyah
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

Klebsiella sp. GMD08 is one of the bacteria that has the capability to dissolve insoluble inorganic phosphate into soluble phosphate ion through their organic acid production. Transposon is a genetic element agent usually used to generate mutant through mutagenesis. Thus it can be used to identify the genetic functions involved in those phosphate solubilizing mechanisms. This research was conducted to identify the genes of Klebsiella sp. GMD08 involved in phosphate solubilization through sequence detection obtained from a hyper-solubilizing phosphate mutant library. Mutation was conducted by inserting mini-Tn5 transposon hosted in Escherichia coli S17-1/Î»pir [pBSL202] into Klebsiella sp. GMD08 chromosome by the filter mating conjugation method. Trans conjugant mutant candidates were then qualitatively and quantitatively analyzed for their solubilizing ability to dissolve tricalcium phosphate [Ca3(PO4)2] using pikovskaya medium. The organic acid characteristics of transconjugant mutants were detected using High-performance liquid chromatography (HPLC). Meanwhile, suspected genes involved in phosphate solubilizing were detected using the sequencing method obtained from the transposon insertion result. Nucleotide Basic Local Alignment Search Tool (nucleotide BLAST) was used to identify the nucleotide base sequence similarity with the database. The results showed that PB116 and PB122 were the two main transconjugant mutants obtained from transposon mutagenesis which had higher tricalcium phosphate dissolving ability. Gluconic acid was the main organic acid produced by Klebsiella sp. GMD08 phosphate solubilizing mechanism. Moreover, arginine repressor (ArgR) and malate dehydrogenase gene (mdh) coding gene were involved in Klebsiella sp. GMD08 phosphate solubilizing mechanism.

CHARACTERIZATION OF RHIZOBACTERIA ISOLATES FROM SOIL AND NODULES sri widawati; SULIASIH SULIASIH; Dwi Ningsih Susilowati; Yuki Muramatsu; I Made Sudiana
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

The plant growth promoting rhizobacteria (PGPR) is a group of bacteria capable of colonizing plants roots, thereby developing a system and improving plants growth and yield. The objectives of the study is to characterize the PGPR activities of several bacterial isolates {in-vitro screening), to examine their activities in stimulating soybean growth (in-vivo screening), and to identify the bacterial species. These were isolated from nodules and soil samples collected from Mount Pancar in Bogor, West Java Province as well as from Bangkirai Hill and Wain River in East Kalimantan, Indonesia. The in-vitro PGPR activity characterization includes the N-fixing ability, ACC-deaminase, indole acetic acid (IAA) production, cellulolytic activity, P-solubilization, Phosphomonoesterase (PME-ase), and nifH-gene detection. The in-vivo PGPR activity with the greenhouse assay was conducted on soybean plant {Glycine max L.). All bacterial isolates were identified using molecular methods based on nucleotide sequence generated from 16S rRNA gene. Three isolates of soil and nodule bacteria with 7 characteristics of PGPR (N2 fixation, ACC-deaminase, cellulolytic activity, IAA production, solubilization index, P available, and PMEase activity) were successfully identified. These isolates were B045 {Klebsiella variicola InaCC B827), B116 (Klebsiella sp. InaCC B833), and B210 {Mangrovibacterplantisponsorlaa.CC B841). The greenhouse assay showed that the plant height, plant dry weight and number of flowers in soybean seedlings significantly increased with Bradyrhispbium sp. strain 4167, then with Klebsiella sp. InaCC B833 and Mangrovibacterplantisponsor InaCC B841. These bacterial isolates which were characterized and screened in-vitro for PGPR potentials and their representative isolates which were identified by 16S rRNA sequence analysis are key factors for selecting PGPR isolates to be commercialized later as bio-stimulant.

EVALUATION OF REVEGETATION PRACTICES IN POST-MINED AREAS OF INDONESIA Meilina Wijayanti; Gerald Kapp; Irdika Mansur
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

In compliance with government regulations, mining companies in Indonesia are obliged to reclaim and return a post-mined area into its pre-mining condition. Revegetation, as part of reclamation activity, performs a significant role in the rehabilitation of degraded post-mined areas to restore their productive land uses. Hence, this study aimed to assess tree growth on the reclamation sites across four mining companies in East Kalimantan, South Sulawesi, South Sumatra, and West Java in Indonesia and to evaluate whether the companies have met the legal requirements set for site revegetation. The success parameters were based on the applicable regulations of the Ministry of Environment and Forestry (MOEF) P.60/Menhut-II/2009 and tree growth parameters (stem diameter, total height and basal area). The parameters set by MOEF included revegetation realization, survival rate, tree density, tree health, species composition and rotation length. The four mining companies applied the two-phase planting method that included the planting of Enterolobium cyclocarpum for the first phase; and in the second phase, the slow growing native species, such as Intsia palembanica, Sycygium polyanthum, Shorea spp. and Elmerrillia tsiampaca. The tree growth parameters showed different performances over species and reclaimed sites. An extremely high growth of stem basal area of 57.6 m2/ha in 11 years, was recorded in the E. tyclocarpum stand of the Mining Company in South Sulawesi. All four mining companies strived to comply with the regulation with scores of revegetation success ranging from 15 to 25 out of 25 possible points. However, these favorable results may not be representative of all the mining companies, as the ones assessed were only those voluntarily supporting this research. Moreover, each of the four companies made some distinct efforts in implementing post-mining revegetation, such as by establishing plots of Melaleuca cajuputi trees producing cajuput oil and polycultures of native species.Â Â Keywords: mining, reclamation, reforestation, rehabilitation, success parametersÂ Â Â Â Â

ANTIFUNGAL Citrus hystrix EXTRACT AS NATURAL FOOD PRESERVATIVE Khoirun Nisa; Ervika Rahayu Novita Herawati; Septi Nurhayati; Vita Taufika Rosyida
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

During their storage, the traditional ready-to-eat food, such as sticky rice cake, are easily contaminated by spoilage pathogens. Hence, this study aims to evaluate the effect of Citrus hystrix extract in reducing spoilage pathogens in sticky rice cake during storage. The experimental sticky rice cake was prepared and formulated with Citrus hystrix extract at varied level of concentrations of 0.65%, 1.26% and 1.82% (w/w). Treated samples were stored at room temperature for 28 days and evaluated periodically for their microbial activity (total plate count), thiobarbituric acid reactive substances (TBARS), and sensory analysis. For its antifungal activity, the Citrus hystrix extract was also compared against Penicillium sp. and Aspergillus nidulans prior to formulation. Results exhibited a significant advantage of the added extracts to the sticky rice cake. All extract levels effectively eliminated the spoilage microorganism and significantly lowered the TBARS values. The physico-chemical properties of sticky rice cake including pH, water activity, and moisture content were equal among all the formulated samples and slightly different at 1.82% (w/w) extract level. Moreover, the addition of Citrus hystrix extract up to 1.82% did not affect the acceptability sensory attributes of the sticky rice cake as compared to the control which has no Citrus hystrix extracts (p > 0.05).

DIVERSITY AND ECOLOGY OF UNDERSTORY PLANT IN SEMPU ISLAND, EAST JAVA, INDONESIA Lia Hapsari; Ilham Kurnia Abywijaya; Siti Nurfadilah; Ridesti Rindyastuti
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.0.0.0.1145

As indicator for environmental disturbances, the understory is an important structural and functional component of forests ecosystems. Hence, this study was conducted to investigate the diversity and composition of understory plants in the lowland forests adjacent to the trekking paths along Semut Bay (dock entrance) to Segara Anakan Lagoon and some coastal areas in Sempu Island, and to detemine their association with the underlying environmental factors as disturbance indicators by the presence of understory invasive alien species (IAS). Sixty six plots of 2 x 2 m2 were established to analyze the understory vegetation, the site profiles and the environmental variables. A total of 135 understory plant species belonging to 108 genera and 60 families were recorded within the 66 plots of the study areas. Poaceae was the dominant family, followed by Compositae, Phyllanthaceae, Sterculiaceae, Rubiaceae, Putranjivaceae and Cyperaceae. The understory communities in the lowland forest adjacent to Semut Path were dominated by tree seedlings and had a relatively fewer composition of shrubs. Coastal areas, which have more open canopies, were dominated by grasses and shrubs. Some dominant native understory species include Ckistanthus ohlongifolius, Pterocymbium javanicum, lschaemum muticum, Guettarda spedosa, etc. Indicating disturbance, 12 understory IAS were found in the study areas. Four of these are among the worldâ€™s worst invaders (Chromolaena odorata, Imperata tylindrica, Lantana camara and Spathodea campanulata), and three are noxious weeds (Cyperus rotundus, Eleusine indica and Imperata cylindricd). The light intensity and air temperature were strongly positively associated with disturbed sites, while relative humidty, soil pH, and elevation were associated with less disturbed sites. These study results provide the scientific basis for management and recommendations on the current diversity status of the understory plant species at Sempu Island, hoping that these would justify further conservation of indigenous species and their protection from these disturbances.

PHYTASE PRODUCTION BY Enterobacter cloacae Suliasih Suliasih; Sri Widawati
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.0.0.0.1233

Â This study aims to isolate the phytase producing bacteria (PPB), a plant growth promoting rhizobacteria (PGPR), from 1Cigna sinensis rhizosphere and to optimize its physicochemical conditioning. Phytase is an enzyme that can hydrolyze the phosphoester bond in organic phosphorus (phytic acid) to form ester phosphate and inorganic phosphate, the available forms of phosphorus. To test its ability to hydrolyze organic phosphates (calcium phytate), the phytase was screened in solid and liquid phytase screening medium (PSM). After isolation, a total of 13 bacteria were positive for this enzymeâ€™s production as indicated by the clear zones of hydrolysis observed around the colony. Enterobacter cloacae strain B1 had the largest hydrolysis efficient (3.43) on solid medium. The phytase-production of the Enterobacter cloacae strain grown in liquid PSM, showed 0.92 U/mL after 48 hours of incubation. This strain produced optimum levels of phytase in the presence of lactose and monoammonium phosphate (NH4H2PO4), as carbon and nitrogen sources, respectively, at 30 Â°C and pH 5.0. The PPB obtained in this study are recommended for further research as to their use as plant biological fertilizers.Â Â

EFFECT OF POWDER AND LIQUID PREPARATIONS OF PROBIOTICS ON WHITE SHRIMP (Litopenaeus vannamei) GROWTH PERFORMANCE Ratu - Safitri; Yuli - Andriani; Sunendi Sunendi; Iskandar Iskandar; Ibnu Dwi Buwono
BIOTROPIA - The Southeast Asian Journal of Tropical Biology Vol. 27 No. 3 (2020): BIOTROPIA Vol. 27 No. 3 December 2020
Publisher : SEAMEO BIOTROP

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11598/btb.0.0.0.1124

Indonesia is the second largest supplier of white shrimp (Litopenaeus vannamei, Boone 1931) in the USA market. Hence, the need for its sustainable production and improved growth. Probiotics, among others, are known for their growth enhancing attributes. Therefore, this study was conducted to determine the effects of powder and liquid probiotics on the growth of white shrimps at the Minaloka Jaya shrimp ponds, Grabag District, Purwerojo Regency, Central Java. The shrimps were cultivated for 60 days and applied with three probiotic treatments, namely commercial liquid probiotics with dosage of 10 mL/kg feed, powder probiotics with dosage of 10 g/kg feed and liquid probiotic with dosage of 10 mL/kg feed. Each probiotic preparation was administered four times a day to over 150,000 vannamei shrimps which were cultured in a semi-intensive system. Probiotics in powder and liquid forms contain Lactobacillus fermentum, L acidophilus, L. plantarum, L, curvatus, Bacillus licheniformis, B. subtilis, and B. polimyxa. B. megaterium, B. coagulans, Pseudomonasputida, Nitrosomonas sp. and Nitrobacter sp. Using the Randomized Block Design (RBD), the three treatments were replicated five times. The application of probiotics in both powder and liquid forms had increased the growth yield of the vannamei shrimp. However, the powder probiotic had shown better growth performance than the commercial liquid probiotics and liquid preparation of probiotics. Probiotic powder form provides a specific growth rate (SGR) of 8.18%, absolute body length of 9.68 cm, absolute biomass of 6.78 g, and feed conversion ratio (FCR) of 1.93.

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Contact Name Knowledge Management Department

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Editorial Address SEAMEO BIOTROP Jl. Raya Tajur Km. 6 Bogor 16134 INDONESIA

Location Kota bogor, Jawa barat INDONESIA

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Contact Name
Knowledge Management Department

Contact Email
kmd@biotrop.org

Phone
+62251-8323848

Journal Mail Official
biotropia@biotrop.org

Editorial Address
SEAMEO BIOTROP Jl. Raya Tajur Km. 6 Bogor 16134 INDONESIA

Location
Kota bogor,

Jawa barat

INDONESIA