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All Journal AL KAUNIYAH Biogenesis: Jurnal Ilmiah Biologi BERITA BIOLOGI Kultivasi Jurnal Sains Teh dan Kina Jurnal Agrotropika Makara Journal of Science
DWI NINGSIH SUSILOWATI
Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumberdaya Genetik Pertanian, Jl. Tentara Pelajar 3A, Bogor 16111
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Computer Science & IT Environmental Science Immunology & microbiology Industrial & Manufacturing Engineering Materials Science & Nanotechnology Mechanical Engineering

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Analysis of Tea Rhizosphere Bacterial Community at the Seedling Stage Using Terminal Restriction Fragment Length Polymorphism (TRFLP) Techniques Susilowati, Dwi Ningsih; Fauziah, Fani; Pranoto, Eko; Hidayat, Ernin; Setyowati, Mamik; Rachmiati, Yati
Jurnal Penelitian Teh dan Kina Vol 19, No 2 (2016)
Publisher : Research Institute for Tea and Cinchona

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (375.744 KB) | DOI: 10.22302/pptk.jur.jptk.v19i2.114

Abstract

Bio-imunizer contains an active compound of  Chryseobacterium sp. and Bacillus sp. has been developed by PPTK Gambung. This formula has positive effect on the growth of tea plants also potentially increasing resistance of the plant. The purpose of this study was to determine the effects of bacteria in Bio-imunizer to the rhizosphere bacterial communities as well as the consistency of its existence after application on tea plants at the nursery stage. The technique used in this research is Terminal Restriction Fragment Length Polymorphism based on metagenomic and culture dependent approaches. The value of relative abundance, Shannon diversity index, Pielous evenness index, and Simpson dominance index were calculated. Based on the T-RF profiles of rhizosphere bacterial communities show that Chryseobacterium sp. and Bacillus sp. which is the active compound of  Bio-imunizer consistently found in the tea plant rhizosphere. Application of Bio-imunizer can increase the diversity of rhizosphere bacterial community without affecting the communities that already exist.
Potency of tea plant indigenous microbe on plant growth and to against blister blight disease (Exobasidium vexans Massee) Fauziah, Fani; Setiawati, Mieke Rochimi; Susilowati, Dwi Ningsih; Pranoto, Eko; Rachmiati, Yati
Jurnal Penelitian Teh dan Kina Vol 19, No 1 (2016)
Publisher : Research Institute for Tea and Cinchona

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (190.257 KB) | DOI: 10.22302/pptk.jur.jptk.v19i1.77

Abstract

The chemical control method of blister blight (Exobasidium vexans Massee) on tea could inflict various negative impacts. In order to obtain an environmentally sound control method of blister blight disease, a nursery trial has been conducted to know the effectiveness of bacterial combinations. The trial was carried out at Gambung experimental garden, with seven treatments and four replications. The indigenous microbial codes are Azoto II-1, Endo-5 and Endo-76. The treatments tested comprised: control (without bacteria),  Azoto II-1 25% + Endo-5 75%; Azoto II-1 50% + Endo-5 50%; Azoto II-1 75% + Endo-5 25%;  Azoto II-1 25% + Endo-76 75%; Azoto II-1 50% + Endo-76 50%; and Azoto II-1 75% + Endo-76 25%. All of the treatments was applied as a soil drench, 50 ml/plant with bacterial concentration at 0,5%. The parameter observed was blister blight disease intensity, plant heights, stem diameter, leaves number, root length, and root volume. The results showed that the combination of Azoto II-1 75% + Endo-5 25% could suppress the intensity of blister blight disease with disease intensity 1.27%. The treatments also affected plant heights, stem diameter, leaves number, root length, and root volume, 15.32 cm; 3.38 cm; 8.05 cm; 18.25 cm and 2.37 cm, respectively.
EKSPLORASI DAN KARAKTERISASI ENTOMOPATOGEN ASAL BERBAGAI INANG DAN LOKASI [Exploration and Characterization of Entomopathogenic from Various Host and Location] Priyatno, Tri Puji; Samudra, I Made; Manzila, Ifa; Susilowati, Dwi Ningsih; Suryadi, Yadi
BERITA BIOLOGI Vol 15, No 1 (2016)
Publisher : Research Center for Biology-Indonesian Institute of Sciences

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (3631.714 KB) | DOI: 10.14203/beritabiologi.v15i1.2859

Abstract

Microbial groups of entomopathogenic (fungi and bacteria) had been reported causing insect mortality. The aim of the study was to explore and characterized entomopathogenic from various host and locations. Fungal identification at genus and species level was caried out based on conidial morphology, hyphal growth, conidiophore and colony color; whilst for bacterial identification was based on standard Bergey’s manual for determinative bacteria. Sixteen entomopathogenic isolates that consisted of fungal and bacteria have been collected and preserved for further characterization. Of the 16 entomopathogen collected samples, five fungal genera was found i.e. Paecilomyces; Metarhizium, Beauveria, Hirsutella; and Cordyceps. Seven isolates belonging to six fungal isolates, and one bacterial isolate had been identified based upon ITS and 16S rDNA sequences, respectively. We confirmed that 6 fungal isolates belong to species of Paecilomyces reniformis, B. bassiana, M. anisopliae, M. anisopliae var acridum, Hirsutella thomsonii. One isolate of red pigmented bacteria Sm201102 have been identified was belonging to species Seratia marcescence. It was also obtained two fungal isolates from different host (spider and beetle) which confirmed by morphological character belong to Cordyceps sp.
KARAKTERISASI BAKTERI PENGHASIL ASAM INDOL ASETAT DAN PENGARUHNYA TERHADAP VIGOR BENIH PADI Lestari, Puji; Suryadi, Yadi; Susilowati, Dwi Ningsih; Priyatno, Tri Puji; Samudra, I Made
BERITA BIOLOGI Vol 14, No 1 (2015)
Publisher : Research Center for Biology-Indonesian Institute of Sciences

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/beritabiologi.v14i1.1859

Abstract

The ability to produce indole acetic acid (IAA) by endophytic bacteria is one of the basic criteria for the use of bacteria as plant growth promoter agent which is essential for the agricultural production.The objectives of this study were to evaluate the ability of 17 bacterial isolates to produce IAA and its effect on improvement of rice seed germination and molecular identification of the selected isolates based on the 16S rRNA gene. The IAA content was determined using Salkowski method measured by spectrophotometer UV-Vis and the effect of endophytic bacteria inoculation on seed germination was done by in vitro assay. Sequences of the selected isolates 16S rRNA amplified by PCR were analyzed the homology against bacterial 16S rRNA database in Genebank. IAA values ranged from 6.632 to 50.053 mg/L with the highest IAA production shown by isolate 6KJ which was followed by 4PB (41.807 mg/L). Bacterial IAA increased rice seed vigor significantly compared to control. However, bacterial inoculation with different concentrations of IAA did not significantly affect the growth of rice plants. Based on the IAA and its effect on seed vigor, 6KJ, 4PB and 2KB were selected for molecular identification. Results showed that the three isolates belonged to Bacillus genus, 6KJ as B. aryabhattai, 4PB belonging to B. cibi and 2KB having 97% homology with B. marisflavi. Further evaluation of the selected endophytic isolates producing IAA is necessary to be carried out to explore their potency as a source of hormone to promote plant growth.
KARAKTERISASI ß-1,3-1,4-GLUKANASEBAKTERI ENDOFITIK BURKHOLDERIA CEPACIA ISOLATE76 ASAL TANAMAN PADI Manzila, Ifa; Priyatno, Tri Puji; Fathin, Muhammad Faris; Ambarsari, Laksmi; Suryadi, Yadi; Samudera, I Made; Susilowati, Dwi Ningsih
BERITA BIOLOGI Vol 14, No 2 (2015)
Publisher : Research Center for Biology-Indonesian Institute of Sciences

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/beritabiologi.v14i2.1819

Abstract

Pathogenic fungus is one of the constraints to increase crop production. Chemical control using fungicides caused negative effects either to the environment or increased pathogen resistance to fungicide. Biological control using microbial-producing ß glucanase is an alternative method to inhibit the growth of pathogenic fungus. The aim of this study was to characterize ß-1,3-1,4-glucanase produced by rice endophytic bacterium, B. cepacia E76. Purification was carried out by ammonium sulphate precipitation, dialysis, and ion exchange chromatography using DEAE sepharose Fast Flow. A further characteristic of the enzyme activity was studied using oatmeal-glucan substrate.Results showed that precipitation using saturated 80% ammonium sulphate generated a good yield with the purity increased by 11 fold and yield of 66%.After chromatography step, the ß-1,3-1,4-glucanase of B. cepacia was successfully purified with an increasedof purity up to 33 fold and yield of 4%. Based on 10% SDS-PAGE, the enzyme profiles had the molecular weight of 15, 48 and 55 kDa.Of the three isozymes, only the 48 kDa isozyme showed the strongest glucanase activity when grown on media containing glucan as substrate.
PATOGENISITAS Beauveria bassiana STRAIN STGD 7(14)2 DAN STGD 5(14)2 TERHADAP WERENG COKLAT (Nilaparvata lugens STÃ…L) Suryadi, Yadi; Wartono, Wartono; Susilowati, Dwi Ningsih; Lestari, Puji; Nirmalasari, Cyntia; Suryani, Suryani
Al-Kauniyah: Jurnal Biologi Vol 11, No 2 (2018): Al-Kauniyah Jurnal Biologi
Publisher : Department of Biology, Faculty of Science and Technology, Syarif Hidayatullah State Islami

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (910.742 KB) | DOI: 10.15408/kauniyah.v11i2.6694

Abstract

AbstrakBeauveria spp. merupakan salah satu jamur entomopatogen yang dapat digunakan sebagai agen biokontrol terhadap berbagai serangga hama. Tujuan penelitian ini adalah untuk menguji patogenitas Beauveria spp. terhadap serangga wereng coklat (Nilaparvata lugens Stål). Isolat-isolat Beauveria spp. diisolasi dari serangga walang sangit dari Situ Gede, Bogor, Jawa Barat. Identifikasi jamur dilakukan berdasarkan analisis data sekuen dari daerah Internal Transcribed Spacer (ITS) rDNA. Hasil uji menunjukkan bahwa patogenisitas isolat Stgd 5(14)2 dan Stgd 7(14)2 menghasilkan tingkat mortalitas 100% terhadap N. lugens. Isolat Stgd 5(14)2 dan Stgd 7(14)2 memiliki nilai LT50 yang rendah, danmenyebabkan kematian yang cepat terhadap wereng coklat. Hasil analisis filogenetik menunjukkan bahwa sekuen Stgd 5(14)2 dan Stgd 7(14)2 termasuk ke dalam spesies Beauveria bassiana s.str. Hasil studi ini merupakan kajian awal terhadap patogenisitas jamur entomopatogen B. bassiana terhadap wereng coklat, dan distribusinya di pertanaman padi Situ Gede, Jawa Barat.Abstract Beauveria spp. is one of the entomopathogenic fungi that can be used as biocontrol agents against various insect pests, including brown planthopper (Nilaparvata lugens Stal). This study aimed to test the pathogenicity of Beauveria spp. against N. lugens. Beauveria spp. were isolated from the rice stink bug insects, collected from Situ Gede, Bogor, West Java. Fungal identification was carried out based on the internal transcribed spacer (ITS) rDNA analysis. The pathogenicity assay revealed that Stgd 5(14)1 and Stgd 7(14)2 isolates were virulent against N. lugens, with a mortality of 100%. The LT50 (median lethal time) determination, indicated that Stgd 5(14)2  and Stgd 7(14)2 isolates had low value indicating a faster mortality in brown planthopper insects. Phylogenetic analysis showed that the sequences of Stgd 5(14)2 and Stgd 7(14)2 belong to Beauveria bassiana s.str. This is the preliminary pathogenicity trial of entomopathogenic fungi B. bassiana against brown planthopper and their distribution in rice-growing, Situ Gede area in West Java.
ANALISIS AKTIVITAS NITROGENASE DAN GEN NIFH ISOLAT BAKTERI RHIZOSFER TANAMAN PADI DARI LAHAN SAWAH PESISIR JAWA BARAT Susilowati, Dwi Ningsih; Setyowati, Mamik
Al-Kauniyah: Jurnal Biologi Vol 9, No 2 (2016): Al-Kauniyah Jurnal Biologi
Publisher : Department of Biology, Faculty of Science and Technology, Syarif Hidayatullah State Islami

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (530.064 KB) | DOI: 10.15408/kauniyah.v9i2.4036

Abstract

AbstrakPenambatan nitrogen oleh bakteri rhizosfer dapat dimanfaatkan untuk menyiasati dampak salinitas pada tanah sawah pesisir. Kemampuan tersebut disebabkan oleh aktivitas nitrogenase yang disandikan gen nifH pada komponen II. Penelitian  ini bertujuan  menganalisis aktivitas nitrogenase pada kondisi salin dan mengidentifikasi gen nifH. Sebanyak 50 isolat bakteri rhizosfer asal tanah sawah pesisir daerah Eretan dan Patimban, Jawa Barat telah dianalisis. Lima isolat yang menunjukkan aktivitas nitrogenase pada kondisi salin adalah Er B1 3, Er B1 4, Er B1 9, Er B2 10, dan Ptb B1 4. Gen nifH kelima sampel diidentifikasi menggunakan PCR menghasilkan amplikon berukuran ~360 bp. Aktivitas nitrogenase tertinggi berdasarkan Analisis Reduksi Asetilen (ARA) diperoleh pada isolat Er B2 10 yang memiliki kekerabatan terdekat dengan bakteri Providencia sp. Hasil yang diperoleh membuktikan bahwa beberapa bakteri asal sawah pesisir dapat menambat nitrogen pada kondisi salin.AbstractThe ability of nitrogen fixation by rhizosphere bacteria could be used to decrease salinity impact in coastal paddy field, due to nitrogenase capability, encoded by a nifH gene in component II. The objectives of this research are to analyze nitrogenase activity in saline condition and identify the presense of the nifH gene. A total of 50 isolates of the rhizosphere bacteria coastal from wetland areas of Eretan and Patimban, West Java, has been isolated and being analyzed. Among them, five isolates i.e. Er B1 3, ER B1 4, Er B1 9, Er B2 10 and Ptb B1 4, showed the nitrogenase activity under saline condition. The polymerase chain reaction (PCR) of the nifH gene from those five samples resulted in the amplicon size of  ~360 bp. The highest activity of nitrogenase assessed by acetylene reduction assay (ARA) was shown by Er B2 10 which closely related to bacteria of Providencia sp. The obtained result showed that several bacteria from coastal paddy field were able to conduct nitrogen fixation under saline stress.
KEEFEKTIFAN FORMULASI BAKTERI BURKHOLDERIA CEPACIA ISOLAT E76 TERHADAP RHIZOCTONIA SOLANI KüHN PADA PERTUMBUHAN TANAMAN PADI DI LABORATORIUM Wartono, Wartono; Suryadi, Yadi; Susilowati, Dwi Ningsih
JURNAL AGROTROPIKA Vol 17, No 2 (2012): Agrotropika Vol.17 No.2 2012
Publisher : JURNAL AGROTROPIKA

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (414.218 KB)

Abstract

In vitro study was carried out to test the effectiveness of the formulation containing Burkholderia cepacia isolates E76 in suppressing growth of Rhizoctonia solani and its effect on plant growth. The study was conducted at Plant Disease Laboratory, Indonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development Bogor, in January to July 2012. The in vitro method was done by growing the bacteria B. cepacia isolates E76 together with R. solani in one dish of potato dextrose agar (PDA) medium. Seed of ?Ciherang? rice was treated with formulation of B. cepacia isolates E76. Observation were done to relative inhibitory rate, rice germination, shoot length, and root length. Results showed that B. cepacia isolates E76 formulation was effective in suppressing the growth of R. solani with relative inhibitory rate at 24 and 48 hour after incubation, respectively 31,3 ? 60,2% and 28,9 ? 47,8%. Rice germination and growth on treated rice seeds were better than control treatment. Concentration at 3% concentration was suggested to be used as recommended concentration for further testing. Key words: Formulation, Burkholderia cepacia isolat E76, Rhizoctonia solani
Determination of Pathotypes from Indonesian Xanthomonas oryzae Pv. Oryzae Population causing Bacterial Leaf Blight and their Reactions on Differential Rice Suryadi, Yadi; Samudra, I Made; Priyatno, Tri Puji; Susilowati, Dwi Ningsih; Lestari, Puji; Fatimah,; Kadir, Trini Suryani
Makara Journal of Science Vol. 20, No. 3
Publisher : UI Scholars Hub

Show Abstract | Download Original | Original Source | Check in Google Scholar

Abstract

The objective of this work was to study the virulence of 15 Xanthomonas oryzae pv. oryzae (Xoo) isolates collected in three provinces in Indonesia (North Sumatra, South Sumatra, and South Sulawesi) based on five Indonesian differential rice genotypes and 10 near isogenic lines (NILs) that have been known to differ in their resistance to bacterial leaf blight (BLB), in a greenhouse assessment. In addition, this study also aims to monitor the responses of 31 rice genotypes (21 NILs, five differentials, five improved cultivars) to BLB disease in a field experiment. The 15 isolates showed different virulence patterns on the NILs’genotypes with a single resistance gene indicating the pathogen diversity. Eight different pathotypes were present, as demonstrated by a particular virulence pattern of each isolate on the genotypes. Determination of Xoo pathotype revealed that Xoo pathotypes responded differently based on their reaction to NILs and Indonesian differential genotypes. The field assessment demonstrated the incidence and severity of BLB disease on rice genotypes ranging from 25% to 100% and 5.5% to 72.91%, respectively, while the mean disease index ranged from 1.15% to 72.9%. The disease response varied among rice genotypes. IRBB50 (Xa4+xa5), IRBB51 (Xa4+xa13), IRBB52 (Xa4+Xa21), IRBB53 (Xa4+Xa21), IRBB56 (Xa4+xa5+xa13), IRBB57 (Xa4+xa5+Xa21), IRBB59 (Xa4+xa13+Xa21), IRBB64 (Xa4+xa5+Xa7+Xa21), IRBB66 (Xa4+xa5+Xa7+xa13+Xa21), IRBB7(Xa7), Angke (Xa4+xa5) and Code (Xa4+Xa7) were revealed to be highly resistant to the BLB pathogen. These genotypes have potential as genetic material for the pyramiding of several resistance genes for the development of rice resistance to BLB disease in Indonesia.
The quality of liquid biostimulant formula of microbial-based during packaging and storage Radiastuti, Nani; Susilowati, Dwi Ningsih; Rahayu, Rizkiyah Putri; Kosasih, Jajang; Tentrem, Titi
Biogenesis: Jurnal Ilmiah Biologi Vol 12 No 1 (2024)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v12i1.42159

Abstract

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Co-Authors Abdul Rauf Eko Pranoto Ernin Hidayat, Ernin Fani Fauziah, Fani Fathin, Muhammad Faris Fatimah I Made Samudera, I Made I Made Samudra Ifa Manzila Kosasih, Jajang LAKSMI AMBARSARI Luthfi Aziz Mahmud Siregar Mamik Setyowati, Mamik Marpaung, Agustina Erlinda Mieke Rochimi Setiawati Nani Radiastuti Nirmalasari, Cyntia PUJI LESTARI Rahayu, Rizkiyah Putri Suryani Suryani Tengku Sabrina Tentrem, Titi Tri Puji Priyatno Trini Suryani Kadir Wartono Wartono Yadi Suryadi Yati Rachmiati, Yati