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All Journal HAYATI Journal of Biosciences MANAJEMEN HUTAN TROPIKA Journal of Tropical Forest Management REINWARDTIA BERITA BIOLOGI JURNAL BIOLOGI INDONESIA Reinwardtia Indonesian Journal of Forestry Research
KUSUMADEWI SRI YULITA
Pusat Penelitian Biologi-LIPI Cibinong Science Center, Jln. Raya Bogor, Km 46. Cibinong, Kab. Bogor.
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Earth & Planetary Sciences Education Immunology & microbiology

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Journal : HAYATI Journal of Biosciences

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Secondary Structures of Chloroplast trnL Intron in Dipterocarpaceae and its Implication for the Phylogenetic Reconstruction YULITA, KUSUMADEWI SRI
HAYATI Journal of Biosciences Vol. 20 No. 1 (2013): March 2013
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (116.483 KB) | DOI: 10.4308/hjb.20.1.31

Abstract

Unambiguous insertion-deletion events were previously identified in trnL intron of 110 species of subfamily Dipterocarpoideae (Dipterocarpaceae).  These indels are associated with the formation of four stem loop structures and featuring characteristic for generic/infra-generic level depended upon which taxonomic classifications are followed. Phylogenetic analyses were performed by including and excluding these structures to examine the robustness of resulted topologies. Results indicated that inclusion of such structures yielded more resoved topologies, and that none of the stemloop structures were homoplasious. Results of this present study was also in agreement with the previous molecular phylogenetic studies that using several genes of cp genomes in that tribe Dipterocarpae was polyphyletic by the placement of all members of the genus Dipterocarpus within tribe Shoreae, and that tribe Shoreae was a potential monophyletic group. The phylogenetic relationships between  variable genera of Hopea and Shorea was also in accordance to earlier studies that suggested a potential monophyly of the two with inclusion of Parashorea and Neobalanocapus heimii. Genera that were recived strong branch support (Dipterocarpus, Dryobalanops, Vatica, and Stemonoporus) possessed certains indels exclusive to each and this may contributed to the monophyletic nature of these genera.  
Co-Authors ADJIE, BAYU - Adzkia, Ulfa Arida Susilowati Iswanto Arrofaha, Nawwall Ayyasy, Yahya Bora, Charles Y. Bora, Charles Y. Diyah Martanti, Diyah FAJARUDIN AHMAD Fifi Gus Dwiyanti Henti Rosdayanti, Henti Herlina Herlina I.G.B. Adwita Arsa Irsyad Kamal ISKANDAR ZULKARNAEN SIREGAR Laswi Irmayanti, Laswi Muharam, Karima Fauziah Murnianjari, Muna Naiola, BP Naiola, BP Rachmat, Henti Hendalastuti Rahman, Mohamad Miftah SALAMAH, ANDI - Susila, Susila Tri Murningsih, Tri Tri Murniningsih Tukirin Partomihardjo WARDANI, WITA - Wenni Setyo Lestari, Wenni Setyo Yuyu S. Poerba, Yuyu S.