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Annales Bogorienses
Published by Badan Riset dan Inovasi Nasional
ISSN : 05178452     EISSN : 24077518     DOI : https://doi.org/10.55981/ann.bogor
Core Subject :
Annales Bogorienses aims to disseminate high-quality scientific research in the field of life sciences, with a strong emphasis on advancing knowledge and applications in biotechnology, molecular biology, biochemistry, bioinformatics, and bioengineering. The journal serves as a platform for researchers, academicians, and practitioners to share original findings, innovative methodologies, and critical reviews that contribute to scientific progress and sustainable development. The journal covers research in biotechnology, molecular biology, biochemistry, bioinformatics, and bioengineering. It publishes original research articles, reviews, and short communications, and is committed to rigorous peer review and open access for the widest possible dissemination of scientific knowledge.
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Articles 203 Documents
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Identification of Drought Tolerant Related Insertional Mutant Lines Using PEG 6000 Satya Nugroho; Vincentia Esti Windiastri; Dwi Widyajayanti; Carla Frieda Pantouw
Annales Bogorienses Vol. 13 No. 1 (2009): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ann.bogor.2009.v13.n1.29-36

Abstract

Drought is one of the most important abiotic stresses in rice (Oryza sativa) productivity. The development of drought tolerant cultivars are therefore highly desireable. We have developed insertional mutant based on the Japonica rice cv Nipponbare rice by transposons Ac/Ds insertions containing activation-tag and gene trap. Screening of the mutant population for drought tolerant related phenotypes is of our priority. The screening protocol based on PEG 6000 has been developed and was being used to screen 70 mutant lines tocharacterize their responds to the treatment based on different parameters (number of leaf, total weight, plant height, root length and number of germinating seeds). These characters were used to score the Degradation Index and Vigour Index. Results showed varyingresponds of the lines to the osmotic pressure. Some lines showing a good performance indicated by lower Degradation Index and higher Vigour Index have been identified. Some inconsistencies in the performances scored by both indices were thought to be due to seed quality.
Gene Flow from Genetically Modified Rice to Their Weedy and Wild Relatives and Its Environmental Consequences Amy Estiati; Satya Nugroho
Annales Bogorienses Vol. 13 No. 1 (2009): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ann.bogor.2009.v13.n1.37-45

Abstract

Rice is one of the most important food crops in the world. Nearly half of the world population consume rice as their staple food (FAO, 2004). With the increasing of world population, the need to provide more food supplies including rice is obvious. Biotechnology is expected to play major roles in the improvement of crop productivity and quality. Unlike transgenic maize, eventhough many research have been done to improve rice performance by genetic engineering, transgenic rice has not been released or commercialized. Among those research to improve rice performance are the attempt to introduce biotic and abiotic stress tolerant traits, herbicide tolerant trait and beta-carotin biosynthetic pathway. Currently, several genetically modified rice cultivars have been and being tested on limited field trials. Undoubtedly, biotechnology will benefit agriculture and thus providing enough food source to keep up with the ever-increasing needs in the future. However, the release and utilization of such technology in agriculture is still arising concerns about the impact to the environment. Therefore the possibility of the transgene escape to the environment needs to be analyzed. For example, whether the application of such technology can create superweed that resulted in the environment problems. On the other hand, cultivated rice may acquire genes for weediness from pollen-mediated gene flow of weedy or wild rice occurring inside or near cultivated rice fields, which leads to persistence and invasiveness of the cultivated rice, although the chance is low. This article discuss the possibility of the occurrence gene flow from the application of genetically modified rice to surrounding rice plants including its wild relatives and weed, and the requirements or precautions needed to be done to prevent gene flow. 
EDITOR'S PREFACE Puspita Lisdiyanti
Annales Bogorienses Vol. 14 No. 1 (2010): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

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Abstract

Application of Microwave Heating in Biomass Hydrolysis and Pretreatment for Ethanol Production Euis Hermiati; Djumali Mangunwidjaja; Titi C. Sunarti; Ono Suparno; Bambang Prasetya
Annales Bogorienses Vol. 14 No. 1 (2010): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ann.bogor.2010.v14.n1.1-9

Abstract

Recently, due to depletion of fossil derived energy stock in the world, there are growing interests in utilizing biomass as sources of bioethanol. There are basically two types of biomass that are usually used or converted to ethanol, starchy and lignocellulosic biomass. The conversion of starchy and lignocellulosic materials are widely explored, however, there are still some drawbacks, such as high enzyme cost and intensive energy needed. Therefore, lower cost as well as energy and time efficient process technology in biomass conversion to ethanol is important in enhancing the use of biomass to substitute fossil fuel. Microwave heating offers some advantages to overcome these drawbacks, especially due to its quick heat transfer and its heating selectivity. In conventional heating the heat was transferred through conduction or convection process which took longer time. Thus, by using microwave, degradation of starchy and lignocellulosic biomass could be completed in shorter time than by using conventional heating method. The roles of microwave heating in the degradation of biomass, especially starchy and lignocellulosic biomass and its relation to the hydrolysis and pretreatment of that particular biomass for ethanol production are reviewed and discussed.
Control of Biodegradability of Polyurethane Foam Based on Palm Oil by Ratio of Soft Segment on the Polymer Backbone Agus Haryono; Evi Triwulandari; Dewi Sondari; Ahmad Randy; Asep Muhamad Ridwanuloh
Annales Bogorienses Vol. 14 No. 1 (2010): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ann.bogor.2010.v14.n1.11-17

Abstract

Polyurethane is polymer synthetic which is formed by reaction between polyols and polyisocyanates. Polyols are compounds which contain two or more hydroxyl groups. Polyurethane can be applied in various forms, such as foam, elastomeric, coating and adhesive. In this work, we developed polyurethane foams by using polyols based on palm oil. Palm oil based polyols as soft segments in the polyurethane backbone accelerate biodegradable process of the polyurethane. Biodegradability is the ability of material to be utilized as a carbon source by microorganisms and converted safely into carbon dioxide, biomass and water. Commercially available polyurethane foams are usually produced from petrochemical based polyols that they are not biodegradable. The biodegradability study was conducted by using Aspergillus niger (fungi) and Pseudomonas aeruginosa (bacteria), with variation of method and media for biodegradation. Rigid polyurethane foam was synthesized by using one shoot process method, which is reaction between palm-based polyol mixture and methylene diphenyl diisocyanate (MDI) at room temperature. The effect of variation of ratio of polyisocyanates (NCO) as hard segment and polyols (OH) as soft segment to the properties of polyurethane foams were studied in detail. Study of the effect NCO/OH ratio was conducted with variation ratio of 0.8, 1.0 and 1.2. Increasing hard segment (NCO) ratio to the soft segment (OH) affected in the decreasing of hydrophilicity of foam. Thus, the penetration of water into bulk of polymer decreased. The biodegradability of foam was also affected by the soft segment ratio on the polymer backbone.
Screening for Natural Producers Capable of Producing 1,3-Propanediol from Glycerol Dian Andriani; Wien Kusharyoto; Bambang Prasetya; Thomas Willke; Klaus Dieter Vorlop
Annales Bogorienses Vol. 14 No. 1 (2010): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ann.bogor.2010.v14.n1.19-24

Abstract

Glycerol is a renewable resource found as the main by-product in the transesterification of triglycerides and fat saponification. Due to the increased production of plant oils, especially palm oil in developing countries, and their larger use by the oleochemical industry, glycerol surpluses are on the world market and this may result in a decrease in glycerol price. As a consequence, biotechnological processes have been developed to convert this substrate into value-added products, such as 1,3-propanediol (1,3-PD). The microbial production of 1,3-PD could be competitive to chemical routes assuming that it is based on cheap raw material and an optimised process. In the screening for 1,3 PD–producing bacteria, raw glycerol as by-product from rapeseed oil processing unit was used as a carbon source compared with commercial glycerol. By using increasing concentration of both glycerols from 50 to 150 g/l, two potential bacteria were obtained from soil samples. BMP-1 was obtained from an enrichment culture using 50 g/l commercial glycerol, while BMR-1 was obtained from an enrichment culture using 100 g/l raw glycerol. The highest conversion yield obtained using the isolate BMP-1 was around 0.62 g 1,3-PD formed per mol glycerol consumed, and 0.73 mol 1,3-PD formed per mol glycerol using the isolate BMR-1. No bacteria were obtained from cultures using 150 g/l commercial and raw glycerol, respectively, which indicated that higher concentration of glycerol has inhibition effect. 
The Influence of Harvesting Period on Lipid Associated Antioxidant Activity of Semicontinuously Grown Chlorella vulgaris Tjandra Chrismadha; Diani Sartika; Iriani Setyaningsih; Uju Uju
Annales Bogorienses Vol. 14 No. 1 (2010): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ann.bogor.2010.v14.n1.25-30

Abstract

A green alga, Chlorella vulgaris, was grown semi-continuously at various harvesting periods, and the lipid content and its associated antioxidant activity was examined. The harvesting periods were 9, 18, and 27 days, while the algal culture was placed in 10 L glass bottles provided with aeration for gas exchange and mixing. Light source was obtained from 440 watt cool fluorescent lamps placed at one side of the culture. Room temperature was 26-32C. Algal lipid extraction was done based on liquid phase separation ofmethanol:chloroform:water and the antioxidant activity was examined by means of oxidation inhibitory in ethanol emulsified limnoleic acid. In addition, a TLC analysis was performed to identify the antioxidant compounds soluble in the lipid. The results showed that harvesting period had a significant influence on the algal lipid content, which were 11.94, 12.96, and 16.51% of the dry weight in the culture with harvesting periods of 9, 18, and 27 days, respectively. No remarkable effect of the harvesting period on the antioxidant activity, which were observed to inhibit oxidation of linoleic acid up to 67-71%. There were five compounds found can be associated with the algal antioxidant activity, which were pheophorbide-a, chlorophyll-b, chlorophyll-a, phaeophytin-a, -carotene, and an unidentified one.
Screening and Optimization of Cellulase Production of Bacillus subtilis TD6 Isolated from Takifugu rubripes Fish Dian Andriani; Don Hee Park
Annales Bogorienses Vol. 14 No. 1 (2010): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ann.bogor.2010.v14.n1.31-37

Abstract

Cellulase enzymes have attracted considerable attention in recent years due to their great biotechnological and industrial potential. Cellulase enzymes provide a key opportunity for achieving tremendous benefits of biomass utilization through the bioconversion of the most abundant cellulosic material into the simplest carbohydrate monomer, glucose. Nowadays, the sources of cellulase-producing bacteria have been broadened into the presence of symbiotic bacteria in herbivorous animal and also from marine. Takifugu rubripes or known as Puffer fish is a unique poisonous vertebrate but nevertheless is considered a delicacy in Korea. The diet of the puffer fish includes mostly algae. This dietary habit considers Puffer fish as host of cellulase-producing bacteria, especially on its gut. In the present study an attempt has been made to search for the cellulolytic bacteria in the gut of Takifugu rubripes. Fifty five microorganisms have been isolated using 1% (w/v) carboxymethyl cellulose (CMC) as substrate. Congo red dye test and DNS method were then used for screening the extracellular cellulase activity of the strains. Among them, TD6 strain has shown the highest performance in term of cellulase activity. In order to evaluate the optimum culture condition of the isolate TD6 for cellulase production, the strain was grown at various temperatures, pH, carbon sources, and nitrogen sources. Under optimum condition, the maximum specific activity of 2.13 U/mg protein was achieved after growth the strain with 1.5% CMC at 45ºC pH 6 for 3 days, respectively. Based on 16S rRNA gene analysis it is proposed that the strain was identified as Bacillus subtilis.
Rapid Assessment of Diverse Trichodermal Isolates of Indonesian Origin for Cellulase Production Fahrurrozi Fahrurrozi; Shanti Ratnakomala; Puspita Lisdiyanti; Trisanti Anindyawati; Endang Sukara
Annales Bogorienses Vol. 14 No. 1 (2010): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/ann.bogor.2010.v14.n1.39-46

Abstract

Trichoderma is a well-known candidate to be promoted as cellulase producer for the hidrolysis of lignocellulose that contain in woody biomass. The number of trichodermal isolates in our laboratory collected from diverse ecosystem types in Indonesia increases significantly during the last 5 years. It is our aim to assess the cultures for its ability in producing cellulase. Sixty-six trichodermal isolates used in this experiment are obtained from Biotechnology Culture Collection (BTCC), Research Center for Biotechnology, Indonesian Institute of Sciences (LIPI). The 31 isolates were isolated from District of Liwa (South Sumatra, Indonesia) and the 35 isolates from District of Maros (South Sulawesi, Indonesia). The isolates were screened qualitatively, 7 isolates from Liwa and 12 isolates from Maros showed cellulolytic activity. From the results of quantitative test, two strains (ID08-T004 and ID08-T63) showed the higher cellulolytic activity among the selected strains, 133.5 and 133.5 U/ml, respectively. These extracellular enzymes were characterized their temperature and pH optimum. The temperature optimum for both enzymes was the same, 50C, with activity 213.6 U/ml for enzyme extracted from ID08-T004 and 197.3 U/ml for enzyme from ID08-T0063. The pH optimum was pH 5 of ID08-T004 with activity 137.7 U/ml and pH 6 for ID08-T063 with activity 75.0 U/ml. The enzymes from ID08-T004 and ID08-T063 were stable in their temperature and pH optimal condition even after 90 minutes incubation with activity 179.0 U/ml and 86.7 U/ml, respectively. The enzyme stability was approximately 150 minutes for both enzymes in the temperature and pH optimum.
EDITOR'S PREFACE Puspita Lisdiyanti
Annales Bogorienses Vol. 14 No. 2 (2010): Annales Bogorienses
Publisher : National Research and Innovation Agency (BRIN)

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Abstract

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