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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 9 Documents
 1 
Search results for , issue "vol. 12 no. 2 (2011)" : 9 Documents clear
Polymorphic sequence in the ND3 region of Java endemic Ploceidae birds mitochondrial DNA R. SUSANTI
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120203

Abstract

Susanti R (2011) Polymorphic sequence in the ND3 region of Java endemic Ploceidae birds mitochondrial DNA. Biodiversitas 12: 70- 75. As part of biodiversity, Ploceidae bird family must be kept away from extinction and degradation of gene-diversity. This research was aimed to analyze ND3 gene from mitochondrial DNA of Java Island endemic of Ploceidae bird. Each species of Ploceidae birds family was identified based on their morphological character, then the blood sample was taken from the birds nail vein. DNA was isolated from blood using Dixit method. Fragment of ND3 gene was amplified using PCR method with specific primer pairs and sequenced using dideoxy termination method with ABI automatic sequencer. Multiple alignment of ND3 nucleotide sequences were analyzed using ClustalW of MEGA-3.1 program. Estimation of genetic distance and phylogenetic tree construction were analyzed with Neighbor-Joining method and calculation of distance matrix with Kimura 2 –parameter. The result of Java Island endemic of Ploceidaebird family exploration showed that Erythrura hyperythra and Lonchura ferruginosa can not be found anymore in nature, but the Lonchura malacca that are not actually Java island endemic was also found. Nucleotide sequence of mitochondrial ND3 gene of Ploceidae bird family showed a quite high polymorphism, with 122 substitutions from 334 nucleotides analyzed. Phylogenetic tree of nucleotide sequence of Ploceidae bird family formed 2 clusters. One cluster consisted of the Ploceus hypoxanthus, Ploceus philippinus, Ploceus manyar and Passer montanus, and the others species were included in the second cluster. ND3 gene sequence data from this Ploceidae family need to be analyzed further to see possible relationship with a particular phenotype.
Coral diversity indices along the Gulf of Aqaba and Ras Mohammed, Red Sea, Egypt MOHAMMED SHOKRY AHMED AMMAR
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120206

Abstract

Ammar MSA (2011) Coral diversity indices along the Gulf of Aqaba and Ras Mohammed, Red Sea, Egypt. Biodiversitas 12: 92-98. Eight sites extending from Ras Mohammed to the northern tip of the Gulf of Aqaba were surveyed for seven different indices of diversity. These sites are: Ras Ghozlani, Marsa Breika, Temple, Katy, Islands, Canyon, South Nuweiba and Marsa Muqabela. The study proved that the healthy condition can be expressed either by a high value of Shannon index or low value of these other indices. Canyon, having effective management, is considered as the healthiest site (based on Shannon species diversity H`) while South Nuweiba is the least healthiest of all sites because of the illegal destructive fishery overexploitation. Sites having old damage with improved values of richness indices and low values of dominance indices (healthy conditions) like Ras Ghozlani and Marsa Breika had enough time and effective management to improve their diversity, while sites with non improved diversity like Temple and Katy are characterized by sponge and ascidian domination representing potent competitors with corals beside the increased nutrients in those sites. Islands and Marsa Muqabela have low values of richness indices because Marsa Muqabela has the highest value of boring worms and considerable sediments.
Hymenopteran parasitoids associated with the banana-skipper Erionota thrax L. (Insecta: Lepidoptera, Hesperiidae) in Java, Indonesia ERNIWATI ERNIWATI; ROSICHON UBAIDILLAH
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120204

Abstract

Erniwati, Ubaidillah R (2011) Hymenopteran parasitoids associated with the banana-skipper Erionota thrax L. (Insecta: Lepidoptera, Hesperiidae) in Java, Indonesia. Biodiversitas 12: 76-85. Hymenopteran parasitoids of banana-skipper Erionota thrax L. (Insecta: Lepidoptera, Hesperiidae) from Java, Indonesia are reviewed and an illustrated key to 12 species is presented to include Theronia zebra zebra, Xanthopimpla gamsura, Casinaria sp., Charops sp., Cotesia (Apanteles) erionotae, Brachymeria lasus, B. thracis, Ooencyrtus pallidipes, Anastatus sp., Pediobius erionotae, Agiommatus sumatraensis and Sympiesis sp. The surveys of the natural enemies of the banana-skipper were conducted in 1990-2006 in several localities in Java. The aim of this study was to assess the native natural enemies of E. thrax, especially the parasitic Hymenoptera. Infested eggs, larvae and pupae of E. thrax were collected and reared in the laboratory. Emerging parasitoids were preserved in both dry mounting and in 80% alcohol for the species identification. Members of families Braconidae, Ichneumonidae, Encyrtidae, Pteromalidae, Chalcididae, Eupelmidae and Eulophidae were recorded as parasitoidsof the banana skipper E. thrax from Java, Indonesia. Species distribution and alternative hosts of the parasitoids are presented.
Plant community establishment on the volcanic deposits following the 2006 nuées ardentes (pyroclastic flows) of Mount Merapi: Diversity and floristic variation SUTOMO SUTOMO; RICHARD HOBBS; VIKI CRAMER
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120205

Abstract

Sutomo, Hobbs R, Cramer V (2011) Plant community establishment on the volcanic deposits following the 2006 nuées ardentes (pyroclastic flows) of Mount Merapi: diversity and floristic variation. Biodiversitas 12: 86-91. Species establishment and composition changes in a substrate with little or no biological legacy is known as primary succession, and volcanoes, erosion, landslides, floodplains and glaciers are some type of disturbances that can create this kind of environment. Mount Merapi with its Merapi-type nuées ardentesor pyroclastic flows provides excellent opportunities to study primary succession. Using chronosequence approach, plant establishment and succession was studied, and thus five areas that were affected by nuées ardentes deposits between 1994 and 2006 were chosen as study sites. Results showed that there was a rapid colonization by vascular plants in primary succession as the sites aged. Imperata cylindrica, Eupatorium riparium, Anaphalis javanica, Athyrium macrocarpum, Brachiaria paspaloides, Dichantium caricosum, Selaginella doederleinii, Eleusine indica, Cyperus flavidus, Calliandra callothyrsus and Acacia decurrens were the species mainly responsible in explaining the differences between sites. Furthermore, the species richness and diversity reach their peak 14 years afterdisturbance.
Genetic variability in apomictic mangosteen (Garcinia mangostana) and its close relatives (Garcinia spp.) based on ISSR markers SOBIR SOBIR; ROEDHY POERWANTO; EDY SANTOSA; SOALOON SINAGA; ELINA MANSYAH
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120201

Abstract

Sobir, Poerwanto R, Santosa E, Sinaga S, Mansyah E (2011) Genetic variability in apomictic mangosteen (Garcinia mangostana) and its close relatives (Garcinia spp.) based on ISSR markers. Biodiversitas 12: 59-63. In order to reveal phylogenetic relationship of mangosteen and several close relatives (Garcinia spp.), we employed seven ISSR dinucleotide primer systems on eleven close relatives of mangosteen and 28 mangosteen accessions from four islands in Indonesia (Sumatra, Java, Kalimantan and Lombok). ISSR analysissuccessfully amplified 43 bands on average 6.1 fragments for each primer system, and these all fragments were polymorphic. Seven close relatives of mangosteen were separated with mangosteen accessions at 0.22 level of dissimilarity, while other four including G. malaccensis, were clustered with mangosteen accessions, this results supported proposal that G. malaccensis was allopolyploid derivative of mangosteen. Clustering pattern among mangosteen accessions, however, not represented their origin, indicated that distribution of the accessions was not linked to their genetic properties.
Genetic variation of Melia azedarach in community forests of West Java assessed by RAPD YULIANTI YULIANTI; ISKANDAR ZULKARNAEN SIREGAR; NURHENI WIJAYANTO; IGK TAPA DARMA; DIDA SYAMSUWIDA
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120202

Abstract

Yulianti, Siregar IZ, Wijayanto N, Tapa Darma IGK, Syamsuwida D (2011) Genetic variation of Melia azedarach in community forests of West Java assessed by RAPD. Biodiversitas 12: 64-69. Melia azedarach L. or mindi (local name) is one of the widely planted exotic species in Indonesia, mostly found in community forests in West Java. However, improving and increasing the productivity of mindi commmunity plantation in West Java requires information on patterns of existing genetic diversity. The present work was aimed at estimating the genetic variation of mindi by using RAPD markers. Outcome of the activities was to propose appropriate conservationand management strategies of genetic resources in order to support the establishment of seed sources. Six populations of mindi plantation in the community forests were chosen for this research, i.e Sukaraja (Bogor-1), Megamendung (Bogor-2), Bandung, Purwakarta, Sumedang and Kuningan. Five primers (OPA-07, OPY-13, OPY-16, OPA-09 and OPO-05) producing reproducible bands were analysed for 120 selected mother trees in total, in which 20 trees per locality were sampled. Data were analysed using Popgene ver 1.31, NTSYS 2.02 and GenAlEx 6.3. Based on the analysis, the observed number of alleles per locus ranging from 1.43 to 1.60, and percentage of polymorphic loci (PPL) ranging from 43.33 to 60.00.%. The levels of genetic variation were considered as moderate for all populations (He range from 0.1603 to 0.1956) and the the mean level of genetic diversity between population (Gst) was 0.3005. Cluster analysis and Principal Coordinates showed three main groups, the first group consists of 4 populations i.e Bandung, Kuningan,Purwakarta and Megamendung, the second was Sukaraja and the third was Sumedang. Based on Analysis of Molecular Variance (AMOVA), the Percentages of Molecular Variance within population (69%) is higher than that of between populations (31%). The moderate level of genetic variation in the community plantation forests, might be due to small population size, leading to reduce genetic variability. Further analysis is required to confirm this findings using other genetic marker.
Status and diversity of arbuscular mycorrhizal fungi and its role in natural regeneration on limestone mined spoils ANUJ KUMAR SINGH; JAMALUDDIN JAMALUDDIN
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120208

Abstract

Singh AK, Jamaluddin (2011) Status and diversity of arbuscular mycorrhizal fungi and its role in natural regeneration on limestone mined spoils. Biodiversitas 12: 107-111. Limestone mined spoils are devoid of adequate population of beneficial microbial flora. Arbuscular mycorrhizal fungi (AMF) are very important constituent of plant- soil-microbe system. In mined spoils the population of AMF is greatly reduced and hence the spoils become very inhospitable for establishment of vegetation. In the present investigation, status of AMF population and its effect on natural regeneration process is studied. It is well known fact that the arbuscular mycorrhizalfungi play very important role in establishment of vegetation in degraded lands. Plantation of seedlings inoculated with arbuscular mycorrhizal fungi provide favorable soil conditions for naturally growing vegetation in the mined overburden spoils. Physico-chemical properties of soil are converted suitable for planted species and thus it allows other species to grow and also provide shade to protect the herbaceous vegetation. Introduction of plant species attracts immigration of other species and if they established, may result into a very distinctive floral cover on disturbed lands. Thus, invasion of native plant species along with planted species may play a significant role in increasing the plant diversity on mined spoils.
Review: Recent status of Selaginella (Selaginellaceae) research in Nusantara AHMAD DWI SETYAWAN
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120209

Abstract

Setyawan AD. 2011. Recent status of Selaginella (Selaginellaceae) research in Nusantara. Biodiversitas 12: 112-124. Selaginella Pal. Beauv. (Selaginellaceae Reichb.) is a cosmopolitan genus that grows in tropical and temperate regions. Some species of Selaginella have widely distribution and tend to be invasive, but the others are endemics or even, according to IUCN criteria, endangered. Nusantara or Malesia (Malay Archipelago) is the most complex biogeographic region and rich in biodiversity. It is one of the biodiversity hotspotof Selaginella, whereas about 200 species of 700-750 species are exist. Selaginella has been survived for 440 mya without any significant morphological modification, but extinction of tree-shaped species. Selaginella have similar morphological characteristics, particularly having heterospore form and loose strobili; and is classified as one genus and one family. However, individual species has high morphological variation caused by different edaphic and climatic factors. Genetic studies indicate high polymorphism among Selaginella species. Selaginella had been used as complementary and alternative medicines treated to postpartum, menstrual disorder, wound, etc. Biflavonoid – the main secondary metabolites – gives this benefit and is especially used as anti oxidant, anti-inflammatory, and anti cancer in modern pharmaceutical industry. The other metabolites, trehalose, potentially act as molecular stabilizer in biological based industry. Metabolite profiles can also be used to identify Selaginella by its species, time and harvest age, and locations. Since most of Selaginella grows on moist, organically rich, and well drained soils, which is vulnerable to forest degradation and global warming, it needs more conservation priority. Biosystematics and ethnobotanical researches of Nusantara Selaginella is needed to expand taxonomic status and bioprospecting of this bioresources.
Population analysis of the javan green peafowl (Pavo muticus muticus Linnaeus 1758) in Baluran and Alas Purwo National Parks, East Java JARWADI BUDI HERNOWO; HADI SUKADI ALIKODRA; ANI MARDIASTUTI; CECEP KUSMANA
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120207

Abstract

Hernowo JB, Alikodra HS, Mardiastuti A, Kusmana C (2011) Population analysis of the javan green peafowl (Pavo muticus muticus Linnaeus 1758) in Baluran and Alas Purwo National Parks, East Java. Biodiversitas 12: 99-106. The javan green peafowl (Pavo muticus muticus) have high pressure to the population and the habitat. The distribution of the bird at Java Island is clumped randomly at several types in condition of fragmented and isolated habitat and it has small individual number every unit population. Baluran and Alas Purwo National Parks are one of distribution javan green peafowl; it was chosen for study on the population analysis. The research was aimed to gain data and information on demographic population of javan green peafowl. The individual number of the bird was countedby call count transect method and councentration count. The population demographic parameter (individual number, age structure and sex ratio) of javan green peafowl was analyzed. The result shown that individual number of the javan green peafowl at Baluran National Park (BNP) was 69.1 birds (in 2006) and 70.5 birds (in 2007) not much differ, but it compared with the observation in1995 approximately was 117.7 birds had significant different. The green peafowl population at BNP declined around 47.50% during 12 years. Meanwhile the population at Alas Purwo National Park (APNP) was 80.7 birds (in 2006) and 73.5 birds (in 2007), if compared to observation in 1998 only 43 birds and in 2006 was 80.0 birds, the population grow up 86.05% during 8 years. The age structure of population indicated that both population (BNP and APNP) tend to unbalance pyramidal, where adult birds more abundance than sub adult or juvenile. The birds sex ratio at both (APNP and BNP) indicated that the peafowl life in polygyny system 1 male: 4 female > 1 male: 2.5 female.

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