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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 49 Documents
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Search results for , issue "vol. 21 no. 1 (2020)" : 49 Documents clear
Activities and molecular characterization of petroleum hydrocarbons degrading rhizobacteria from mangrove plants (Rhizophora sp.) in Kulon Progo, Yogyakarta, Indonesia Vivekananda Vinsensius Benget; ENDAH RETNANINGRUM
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210104

Abstract

Abstract. Benget VV, Retnaningrum E. 2020. Activities and molecular characterization of petroleum hydrocarbons degrading rhizobacteria from mangrove plants (Rhizophora sp.) in Kulon Progo, Yogyakarta, Indonesia. Biodiversitas 21: 21-27. The increasing number of human population density around mangrove ecosystems has resulted in its pollution, particularly oil spills. Rhizobacteria have metabolic abilities that make them possible to live in polluted environmental conditions and the potential to be biological agents for oil remediation. However, investigations of rhizobacteria especially from rhizospheres of mangrove plants (Rhizophora sp.) and their potential use in remediation remains limited. Therefore, the purposes of this research were to investigate the ability of selected isolate in the degradation of petroleum hydrocarbons and identify its isolate using 16S rRNA gene. Observation of that degradation ability was conducted by inoculating the isolate in Bushnell-Haas Minimal Salt (BHMS) medium containing crude petroleum 0.01 %. After 10 days of incubation, the degradation hydrocarbons were analyzed by measuring Total Petroleum Hydrocarbons (TPH) using Gas Chromatography-Flame Ionization Detector (GC-FID) method. Four rhizobacteria isolate from rhizospheres of mangrove plants (Rhizophora sp), NMKP1, NMKP2, NMKP3, and NMKP4 were analyzed based on their growth in Bushnell-Haas Minimal Salt (BHMS) medium containing crude petroleum 0.01 %. The results revealed that NMKP4 isolate had the highest specific growth rate. In addition, it could degrade those hydrocarbons pollutants as much of 98.72 % within 10 days. Based on molecular characterization showed that NMKP4 isolate was in the same cluster as Pseudomonas sp. CO03.
Local food diversification of foxtail millet (Setaria italica) cultivars in West Sulawesi, Indonesia: A case study of diversity and local culture Ramlah Ramlah; Marcia Bunga Pabendon; Budi Setiadi Daryono
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210110

Abstract

Abstract. Daryono BS, Ramlah, Pabendon MB. 2020. Local food diversification of foxtail millet (Setaria italica) cultivars in West Sulawesi, Indonesia: A case study of diversity and local culture. Biodiversitas 21: 67-73. Foxtail millet (Setaria italica (L.) P.Beauv.) is one of the non-rice cereal crops that has long been domesticated in the world, including West Sulawesi-Indonesia as an alternative food crop instead of rice on local culture. Traditional millet cultivars may become an indispensable part of the local culture and traditions of millet-growing people across Asia over many generations. The existence of this germplasm in West Sulawesi Province, Indonesia has been observed morphologically and showed a close relationship with local culture. A total of six traditional millet cultivars (Tarreang) with different morphological characteristics have been found in this region and still preserved sustainably by the local farmers along with their local culture and traditions. The tradition of Sayyang pattu’duq may become a good example of this relationship. In this tradition, some traditional food is made by the local people like porridge tarreang, jelly tarreang, buras tarreang, jepa golla mamea, jepa anjoroi, dodol tarreang, also widely presented and used as a symbol in important ceremonies, such as celebrations in the month of Muharram, completed Al-Qur'an for children, weddings, births or show the baby's. This information may be useful as guidance for conservation and millet breeding programs in the future.
The existence of coprophilous macrofungi in Banyumas, Central Java, Indonesia: Coprophilous Macrofungi in Banyumas Aris Mumpuni; Nuraeni Ekowati; Daniel Joko Wahyono
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210135

Abstract

Abstract. Mumpuni A, Ekowati N, Wahyono DJ. 2020. The existence of coprophilous macrofungi in Banyumas, Central Java, Indonesia. Biodiversitas 21: 282-289. Coprophilous fungi are cosmopolitan that inhabiting herbivorous animal feces. Some of them are edible mushrooms, as well as hallucinogenic psychotropic fungi that can be used in the pharmaceutical industry. Studies on coprophilous fungi in Indonesia have not been widely carried out. Tropical climate conditions in Indonesia including in the Ex- Residence of Banyumas, Central Java Province, Indonesia support the growth and spread of coprophilous fungi and are promoted by the spread of herbivorous livestock evenly in almost all regions that always provide suitable dung substrates for the fungal habitat. Based on this background, the purpose of this preliminary study was to obtain coprophilous fungi genera and find out their dominance in the area. This research used survey method with purposive random sampling and focused on macroscopic fungi. The obtained fungi were identified as macro and micro morphologically. From this study, there were 12 genera which were Panaeolus, Coprinopsis, Stropharia, Tricholoma, Lycoperdon, Ascobolus, Rhodocybe, Conocybe, Bolbitius, Leucocoprinus, Mycena, and Hypoloma. The dominance index of the coprophil fungal genera in the ex-residency Banyumas was 0.329; and the coprophil fungi obtained with the highest frequency of occurrence were Coprinopsis (34.4%) and Panaeolus (30.1%).
Evaluation of SSR and important agronomical characters of promising mutant lines of soybean ASADI; NURWITA DEWI; KRISTIANTO NUGROHO; RERENSTRADIKA TIZAR TERRYANA; MASTUR; Puji Lestari
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210137

Abstract

Abstract. Asadi, Dewi N, Nugroho K, Terryana RT, Mastur, Lestari P. 2020. Evaluation of SSR and important agronomical characters of promising mutant lines of soybean. Biodiversitas 21: 299-310. Improved soybean (Glycine max (L.) Merr.) varieties resistant to major pest or disease, and in accordance with consumer preferences are important in breeding programs to raise their productivity. Identification of superior promising mutant lines of soybean before releasing them needs multiple environment trials complemented with molecular assay. This study aimed to assess morpho-agronomical and molecular characters using SSR markers of promising mutant lines of soybean (Glycine max (L.) Merr.). A total of 14 SSR markers were used to evaluate 20 mutant lines along with their parental lines and check varieties, and eight different locations were chosen to field evaluation of 11 selected lines induced by gamma-ray. Values of Polymorphism Information Content, allele number, and gene diversity index were high, indicating the great genetic diversity among these mutant lines, and far distant from their parental lines. Phylogenetic tree also supported the distinguishable among gamma ray-induced mutant lines compared to the parental lines. The significant interaction between promising line and environment showed their high adaptability and stable yield in various environments. Biosoy-8 (2.713 ton/ha) and Biosoy-11 (2.631 ton/ha) revealing the high yields lines supported with the molecular information could be potential to be released as new varieties and can direct their efficient utilization for field application or further improvement scheme.
Induced resistance by Bacillus subtilis on oil palm seedling infected by Ganoderma boninense FIFI PUSPITA; HADIWIYONO; SUSILO HAMBEG POROMORTO; DEWI INDRIYANI ROSLIM
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210105

Abstract

Abstract. Puspita F, Hadiwiyono, Poromorto S. H, Roslim D. I. 2020. Induced resistance by Bacillus subtilis on Ganoderma boninense infected oil palm seedling. Biodiversitas 21: 28-33. Basal Stem Rot (BSR) caused by Ganoderma boninense Pat is the most important disease in oil palm plantations. The use of biological resistance inducer is a promising alternative disease-control. The research evaluated the potential and mechanism of endophytic Bacillus subtilis as resistance inducer agent of oil palm seedlings to infection of G. boninense. The Experiment was carried out using a completely randomized design consisting of 4 treatments and 3 replications namely of endophytic B. subtilis with four inoculum densities (0, 1011, 1012, and 1013 cfu.mL-1) on oil palm before inoculation of G. boninense. The observation variables were incubation period, disease intensity, growth and concentration of salicylic acid in leaf extract of oil palm seedlings. In addition, the ability of B. subtilis to produce IAA in liquid Pikovskaya medium enriched by tryptophan was assayed. The results showed that B. subtilis was potential as biological resistance inducer agents of oil palm seedlings to infection of G. boninense. The induced resistance was related to increasing growth, salicylic acid in leaf the seedlings and the capability was assayed to produce IAA.
Detection of Enterocytozoon hepatopenaei (EHP) DNA in the polychaetes from shrimp ponds suffering white feces syndrome outbreaks Desrina Desrina; Slamet Budi Prayitno; Alfabetian Harjuno Condro Haditomo; Rusthesa Latritiani; Sarjito Sarjito
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210144

Abstract

Abstract. Desrina, Prayitno S B, Haditomo A H C, Latritiani R, Sarjito S. 2020. Detection of Enterocytozoon hepatopenaei (EHP) DNA in the polychaetes from shrimp ponds suffering white feces syndrome outbreaks. Biodiversitas 21: 369-374. Enterocytozoon hepatopenaei (EHP) is the newly emerging pathogen of farmed shrimp in Asia. EHP was associated with white feces syndrome (WFS) in shrimp because the spores existed in the feces of shrimp with WFS. Polychaetes are benthic invertebrates and potential to contribute to EHP outbreaks in a pond by acquiring the pathogen and transfer it to shrimp upon feeding. The objective of this study was to determine (1) the occurrence of EHP in polychaetes with Giemsa staining of the coelomic fluid, 1-step PCR and histopathology and (2) to determine pathological changes of EHP infected tissues. Polychaetes were obtained from 20 shrimp ponds located in 9 districts along the North Coast of Java Island, Indonesia. There were no EHP spores detected in the stained coelomic fluid. The 1-step PCR analysis was able to detect the EHP DNA (prevalence was 10%). The Alignment of EHP DNA sequence found in polychaetes showed 100% identity with a published sequence. Histopathological examination showed hypertrophy cells and nuclei, however, no EHP mature spores were found in the epithelial cells on the mucosal layer of the stomach and intestines. Although methods used did not give the convergence results, however, a result of PCR and sequence analysis showed that EHP occurred in the polychaetes in the WFS infected ponds at low point prevalence.
Antlions (Neuroptera, Myrmeleontidae) along the North Caspian shore; distributional analysis and zoogeographical division of Caspian coast of Russia VICTOR A. KRIVOKHATSKY; Ilhama Kerimova; VASILYI V. ANIKIN; DMITRYI M. ASTAKHOV; ANNA S. ASTAKHOVA; ELENA V. ILYINA; IGOR S. PLOTNIKOV; JULIA V. SAMARTSEVA
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210134

Abstract

Abstract. Krivokhatsky VA, Kerimova IG, Anikin VV, Astakhov DM, Astakhova AS, Ilyina EV, Plotnikov IS, Samartseva JV. 2020. Antlions (Neuroptera, Myrmeleontidae) along the North Caspian shore; distributional analysis and zoogeographical division of Caspian coast of Russia. Biodiversitas 21: 258-281. Zoogeographically regionalization of Northern Caspian territory, adjacent Eastern Caucasian and Volga-Ural regions were carried out by using the original cladistic program (CLA) based on faunistic investigations of Neuroptera, Myrmeleontidae. A total of 47 of elementary districts of physical geography or geobotanical mapping and 41 species of antlions were used for analyses in the Matrix. 46 elementary faunas were combined in the region into seven concrete faunas. The ConCaspian and Volga-Ural antlion faunas were mixed. Aspoeckiana uralensis Hölzel, 1969 was considered as superspecies with a complex of five subspecies with overlapping areas of distribution, associated in its origin with the spread of Northern antelopes (Saiga tatarica (Linnaeus, 1766), Gazella subgutturosa Guldenstaedt, 1780, Procapra gutturosa Pallas, 1777). At the North Caspian Shore Aspoeckiana uralensis uralensis Hölzel, 1969, and Aspoeckiana uralensis jakushenkoi Zakharenko, 1983, cohabited with the saiga antelope, using their paths for larval colonies. The dynamics of Macronemurus bilineatus Brauer, 1868 area over the past 100 years was described in detail. For some paleoenvironmental conditions of their origin and colonization of the Caspian region are reconstructed. The leading role of Turan in the formation of the fauna of the antlions is determined.
Plant soil seed bank analysis in wildfire former area of Mount Talang, West Sumatra, Indonesia Indra Dwipa; CHIKA SUMBARI; ASWALDI ANWAR
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210120

Abstract

Abstract. Dwipa I, Sumbari C, Anwar A. 2020. Plant soil seed bank analysis in wildfire former area of Mount Talang, West Sumatra, Indonesia. Biodiversitas 21: 155-160. Forest wildfire affects the ecosystems that live in it. One of them is plant ecosystem. One of forest wildfire occurred in Mount Talang, West Sumatra, Indonesia on February 1, 2018. This research aimed to study the soil seed bank that grew after wildfire in mount Talang. The sampling collection was done from former forest fire and natural forest. Germination of soil seed bank was conducted in the Laboratory of Seed Technology, Faculty of Agriculture and identification was conducted in Herbarium of Department of Biology, Faculty of Mathematics and Natural Science, Andalas University, Padang, Indonesia. Nested sampling was used in this study. Two natural forest and 2 former forest wildfire sites were used as sampling locations. Observation plot for sampling collection sized as 2 m x 2 m for sowing, 5 m x 5 m for stake, 10 m x 10 m for pole and 20 m x 20 m for tree. In plot, soil seed bank sampling was taken in 0-5 cm, 5-10 cm, 10-15 cm and 15-20 cm in depth. The result showed that 1 family and 14 plant-soil seed bank species were found in natural forest and 8 plant-soil seed bank was found in forest wildfire former area.
Variation of axillary growth as respond of Morus spp. micropropagation using various concentration of Indonesian local solid substance Yasinta Ratna Esti Wulandari; Laurensia Danis Anggradita
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210112

Abstract

Abstract. Wulandari YRE, Anggradita LD. 2020. Variation of axillary growth as respond of Morus spp. micropropagation using various concentrations of Indonesian local solid substance. Biodiversitas 21: 80-85. The difficulties of growing Morus spp. makes it become one local plant that hard to cultivate conventionally even though it’s a beneficiary plant. Hence cultivation Morus spp. through tissue culture technique could help growing this plant. This research is aimed to design the optimal condition for micropropagation of local Morus spp. (Morus bombycis var. lembang, M. cathayana, M. multicaulis, and M. alba var. kanva-2) using agar-agar as Indonesian local solid substance. This solid substance is used as its cheap and easy to find compared to other solid substances. This research used MS medium supplemented with 0.1 ppm naphthalene acetic acid + 1.0 ppm benzyl aminopurine and various concentration of agar-agar (0.6%, 0.8%, 1.0%). Growth rate, axillary bud length and number, leaf number, callus formation and contamination were observed in this research. All those concentrations could be used for micropropagation of Morus spp. Agar concentrations of 0.8 and 1.0% showed better results than 0.6% because it showed the highest results.
Review: The invasion of Acacia nilotica in Baluran National Park, Indonesia, and potential future control strategies Shafia Zahra; RICHARD W. HOFSTETTER; KRISTEN M. WARING; CATHERINE GEHRING
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210115

Abstract

Abstract. Zahra S, Hofstetter RW, Waring KM, Gehring C. 2020. Review: The invasion of Acacia nilotica in Baluran National Park, Indonesia, and potential future control strategies. Biodiversitas 21: 104-116. Acacia nilotica, commonly called prickly acacia, is infamous for its ability to invade various ecosystems, especially savannah. The tree was introduced to Baluran National Park (BNP), Indonesia in 1969 and nowadays has invaded more than 50% of BNP savannah habitat. Its presence has had significant negative impacts on local flora and fauna of the park. Physical and chemical eradication efforts of this plant have been conducted in the park but these have failed. Little is known about the tree invasion in Indonesia and no control suggestions have previously been proposed. Here, we review the causes and history of the invasion of this tree, describe previous attempts to eradicate the tree, and provide possible containment and control strategies. We describe 12 strategies based on successes and failures to control this tree in Indonesia and other countries and divide the methods into four categories: (i) physical: girdling the trunk, uprooting with winch, manual seedling uprooting, defloration, and restoration with fire; (ii) chemical: using biochar or herbicides; (iii) biological: using native plant competitors (grasses, shade trees), predators (insect) and pathogens (fungi) or microorganisms; (iv) social: centralized tree utilization, education outreach, and stakeholder collaboration. We summarize the relative effectiveness and efficiency of each method and explain how to integrate the aforementioned methods to help authorities choose the most appropriate strategies for their resources, needs and goals.

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