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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,259 Documents
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Short Communication: Genetic diversity and conservation strategy considerations for highly valuable medicinal tree of Taxus sumatrana in Indonesia HENTI HENDALASTUTI RACHMAT; ATOK SUBIAKTO; KOICHI KAMIYA
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170213

Abstract

Rachmat HH, Subiakto A, Kamiya K. 2016. Genetic diversity and conservation strategy considerations for highly valuable medicinal tree of Taxus sumatrana in Indonesia. Biodiversitas 17: 487-491. Genetic variation is considered to be the key factor for longterm survival of the species. The recognition of the existing genetic diversity is the preliminary phase in development of an effective strategy for conservation of forest tree species. Taxus sumatrana or is confined to grow naturally only in Asia, it is a rare and endangered species that in several Asian countries needs both ex situ and in situ protection program. In its natural distribution, T. sumatrana is the only Taxus species that reached its southernmost distribution to Sumatran forest-Indonesia and locally named as Sumatran Yew. The objective of this research was to determine the genetic variation of T. sumatrana as baseline information for designing conservation strategy of the species. Leaves samples were collected from two natural population of T. sumatrana in Mt. Kerinci (Sungai Penuh, Jambi) and Mt. Dempo (Pagaralam, South Sumatra), both sites are located along Bukit Barisan Mountain Ranges of Sumatra. We sequenced two non-coding chloroplast DNA (cpDNA) regions of trnL-trnF and psbC-trnS that each yielded 808 bp and 1092 bp, and rbcL gene of 523 bp, in which the total length covered 2423 bp. Surprisingly, we found no variation for all individuals and population, which means that the species is similar and both populations are not genetically structured. This study also revealed on how a proper conservation strategy should be practiced for the species as we know that without a sufficient amount of genetic variation, a population cannot evolve in response to changing environmental conditions. In situ conservation program is a must that can maintain the existence of the species while at the same time keeping the sustainability of the entire systems; in other side ex situ conservation strategy can take place as an additional effort to secure the genetic resources in case of the catastrophic events that might diminish their limited natural habitat.
Diversity of faunal communities in the Biodiversity Park of Ciherang, Bogor, West Java, Indonesia HENDRA GUNAWAN; SUGIARTI SUGIARTI; ANITA RIANTI; VIVIN SILVALIANDRA SIHOMBING
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170212

Abstract

Gunawan H, Sugiarti, Rianti A, Sihombing VS. 2016. Diversity of faunal communities in the Biodiversity Park of Ciherang, Bogor, West Java, Indonesia. Biodiversitas 17: 479-486. A Biodiversity Park is a new concept for ex situ conservation in Indonesia which was first launched in 2012. The purposes of a Biodiversity Park are to conserve indigenous and threatened species of flora, provide habitat for a diversity of animals, and to provide opportunities for economic benefit, recreation, education and research. The main goal of Biodiversity Park is to increase flora and fauna diversity in the midst of human settlement and industrial precincts. This research was directed at studying the diversity of faunal communities in the Biodiversity Park of Aqua Danone Ciherang, Bogor, West Java, Indonesia. Line transects, walk transects, terrestrial transects and point count methods were combined to census the mammals, reptiles, amphibians and birds in the Biodiversity Park. Twenty five families of fauna were identified, consisting of 28 genera and 32 species. The Shannon diversity index for the total faunal community was 2.82. Composition of the faunal community consisted of birds (66%), reptiles (16%), mammals (12%) and amphibians (6%). This finding supports the goal that Biodiversity Park can increase flora and fauna diversity. The diversity index of 2.37 for the bird community indicates a beneficial contribution to habitat quality within an urban environment.
Identification of growth hormone gene variation in exon region at Indonesian Local Cattle based on PCR-SSCP method SURYA NUR RAHMATULLAH; JAKARIA JAKARIA; RONNY R NOOR
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170214

Abstract

Rahmatullah SN, Jakaria, Noor RR. 2016. Identification of growth hormone gene variation in exon region at Indonesian Local Cattle based on PCR-SSCP method. Biodiversitas 17: 492-497. The aim of this study was to identify the polymorphisms of the growth hormone gene (GH) of Indonesian local cattle as well as two exotic cattle, as the outside group, using polymerase chain reaction and single strand conformation polymorphism (PCR-SSCP) and using five primers DNA to identify polymorphism of GH gene. Twenty DNA samples of each Indonesian local cattle, consists of Bali, Pesisir, Madura and Katingan, and ten DNA samples of Simmental and Limousine cattle were used. The results showed that the polymorphism of the GH gene was found in three exons which are exon 1, 2 and 5 for Indonesian local cattle except for the Bali and Madura cattle that showed polymorphism was only at exon 2. Bali and Madura cattle also showed monomorphism in exon 3 and 4. On the other hand, the exotic breed showed the polymorphism in all exons, except for exon 2 in Simmental cattle which was found to be monomorphic.
Soil invertebrate diversity in coffee-pine agroforestry system at Sumedang, West Java IDA KINASIH; TRI CAHYANTO; ANA WIDIANA; DESTI NURBAH INDAH KURNIA; UCU JULITA; RAMADHANI EKA PUTRA
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170211

Abstract

Kinasih I, Cahyanto T, Widiana A, Kurnia DNI, Julita C, Putra RE. 2016. Soil invertebrate diversity in coffee-pine agroforestry system at Sumedang, West Java. Biodiversitas 17: 473-478. In order to maintain natural habitat while provide economic benefit for community near forest, some agroforestry systems were developed. This system depends on service provided by ecosystem such as nutrient cycling by soil invertebrates. One of important factors of healthy ecosystem services at particular agroecosystem is local biodiversity of the area. In this study we carried out biodiversity survey of soil invertebrates at local coffee - pine agroforestry system at Rancakalong Sub-district, Sumedang District, West Java, Indonesia. Soil invertebrates were collected from coffee plantation, coffee and pine (Pinus merkusii) plantation and pine plantation by 40 pitfall trap per location. Results showed the highest abundance was recorded at coffee plantation (2477 individuals) and the lowest was at pine plantation (1372 individuals). All collected soil invertebrates grouped into 3 classes (Arachnida, Chilopoda and Insecta), 16 orders, 47 families, and 124 morphospecies. Soil invertebrates were dominated by Formicidae, Scarabaeidae, Blattidae, Forficulidae, and Phalangiidae. The average diversity index of soil invertebrates was 2.25 (coffee plantation), 2.64 (coffee and pine plantation) and 1.85 (pine plantation). The evenness value was 0.30 (coffee plantation), 0.49 (coffee and pine plantation) and 0.39 (pine plantation). This study showed agroforestry may improve soil invertebrate abundance and diversity of monoculture pine forest through creation of additional and alternative nutrition and microhabitats.
Short Communication: Fecundity of freshwater prawn (Macrobrachium rosenbergii) in selected rivers of Sarawak, Malaysia KHAIRUL ADHA AR; FAZNUR FATEH NICHOLAS; SHABDIN MOHD LONG; AWANGKU SHAHRIR NAQIUDDIN; YUZINE ESA
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170215

Abstract

Khairul Adha AR, Nicholas FF, Long SM, Naqiuddin AS, Esa Y. 2016. Fecundity of freshwater prawn (Macrobrachium rosenbergii) in selected rivers of Sarawak, Malaysia. Biodiversitas 17: 498-502. Giant freshwater prawn (Macrobrachium rosenbergii) is one of the important species of freshwater aquaculture in Malaysia. However, the sustainability of freshwater prawn farming is currently threatened by low production efficiency. In addition, the degradation of natural habitats and the use of illegal catching methods have caused great threats to freshwater giant prawn populations. Thus, the main objective of this study was to examine the wild population, ecology, and fecundity of giant freshwater prawn in natural water bodies in Sarawak’s rivers namely Samarahan, Sadong and Kayan rivers. The mean values of the physicochemical water parameters, such as dissolved oxygen, pH values, conductivity, turbidity and temperature from three rivers surveyed were differenced significantly (P< 0.05). However, the characteristics of water quality measured were found to be within the ideal range for freshwater prawn to survive and grow. There were significant differences (P < 0.05) of total length, total body weight and eggs weight of prawn population among three rivers. There was no significant difference (P > 0.05) of prawn fecundity among the three rivers. The present study showed that berried female particularly from Kayan and Kerang river are suitable as potential brood stock from the wild population for breeding program.
Identification of soybean genotypes adaptive and productive to acid soil agro-ecosystem M. MUCHLISH ADIE; AYDA KRISNAWATI
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170217

Abstract

Adie MM, Krisnawati A.2016. Identification of soybean genotypes adaptive and productive to acid soil agro-ecosystem.Biodiversitas 17:565-570. Optimalization of acidic land for soybean development can be performed through the provision of soybeanvariety adapted to low pH. A total of 13 soybean genotypes was identified for its performance on three acid soil sites in LampungProvince, Indonesia, from February to June 2015. Soybean variety adapted to acid soil (Tanggamus and Demas 1) were used as checkvarieties. The experiment was using Randomized Block Design, 15 traits and four replicates. The concentration of pH (H2O) in locationsL1, L2 and L3 were 5.87, 5.04, and 4.73, respectively. The average yield in L1, L2 and L3 were 1.96 t/ha, 2.17 t/ha, and 1.92 t/ha,respectively. This showed thatyielddecrease assoil pHvaluedecline. Genotype G4ABwas consistently produced highest yield at pH5.04 as well as at pH 4.73, hence the genotype G4AB was not only adaptive at low pH but also relatively productive. Based on yield inthree locations, G4AB categorized as less stable. On the contrary, genotypeG115H/Kaba//Kaba///Kaba-8-6 produced average yield of2.23 t/ha, and categorized as stablein three sites of acid soil. Soybean genotype adaptive to acid soil was characterized by its ability tomaintain the plant height,and followed by a high number of node per plant and pod per plant.
Evaluation of vegetation types in the West Zagros ATENA ESLAMI FAROUJI; HAMED KHODAYARI
Biodiversitas Journal of Biological Diversity Vol. 17 No. 1 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170101

Abstract

Farouji AE, Khodayari H. 2016. Evaluation of vegetation types in the West Zagros (Beiranshahr region as a case study), inLorestan Province, Iran. Biodiversita 17: 1-10. The accurate identification of plant communities and their distribution are classical tools for mapping and classification of plants. Plants are strongly sensitive against changing environmental conditions. Moreover, Iran has a special position in Asia which has been creating a diverse ecosystem. Close floristic studies are necessary for precise determination of diversity and uniformity. To determine plant species in different vegetation types in Beiran shahr region, modified multi-scale Whittaker plots were constructed. This studied area was about 20000 ha and located in Northwest to Southwest of Iran. Eighty-nine plots were made in different longitude and latitudes. The minimum and maximum heights were 1101 and 2489 m asl., respectively. Within each modified multi-scale plots, each species was explored. Of 608 species, 498 and 97 are belonging to dicotyledons and monocotyledons, and remained 13 species were Pteridophytes. As measured, Therophyte and Champhyte are the dominant and recessive form of life in studied area. Based on species of each plot and subplots, mean Jaccard's coefficient, number of unique species and mean unique species/plot were estimated for each vegetation type. It is obvious that there is a clear correlation between Slopes of the species-log area curve and Mean number of unique species per plot.
Identification of denitrifying bacteria from sediments of Rawa Jombor waters, Central Java and its trophic status SUNARTO SUNARTO; RATNA SETYANINGSIH; ANDRI YANTI
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170218

Abstract

Sunarto, Setyaningsih R, Yanti A. 2016. Identification of denitrifying bacteria from sediments of Rawa Jombor waters, Central Java and its trophic status. Biodiversitas 17: 578-584. Pooled freshwater (lentic) is susceptible to contamination. One of pollution contributors on freshwater is the agricultural sector. One of them is the inclusion of waste in the form of organic and inorganic materials. The waste will increase the nutrient in waters causing sedimentation, eutrophication and pollution. The pollution is from nitrates derived from agricultural wastes using inorganic fertilizers. An alternative solution for the prevention and tackling of it is to utilize aquatic microorganisms namely denitrifying bacteria. These bacteria can convert nitrates into nitrogen gas (N2) in the anaerobic state so that it can handle the pollution of nitrate in water. This study aimsed to identify the denitrifying bacteria isolated from aquatic sediments of Rawa Jombor and to determine trophic status of Rawa Jombor waters. Identification of denitrifying bacteria was done through the morphology and physiology testing phase and also molecular analysis of 16S rRNA gene sequence. Based on parameters of total nitrogen, phosphor and brightness referring to the criteria of the lake trophic status attached to Ministry of Environment (PerMNLH) No. 28 2009, Rawa Jombor aquatic trophic status was analyzed. The results showed that as many as 6 denitrifying bacteria were isolated from sediments in Rawa Jombor waters, Klaten. Characteristics of bacteria colonies were translucent, round in shape, Gram-negative, rod and motile shaped cells. Based on the analysis of 16S rRNA gene sequence, all of denitrifying bacteria isolates were identified as having the highest similarity to the Shewanella genus. TmD isolate was identified as Shewanella putrefaciens, while TmE, TmG and TmI isolates were identified as Shewanella genus and TmA isolates was new species. Trophic status of Rawa Jombor aquatic was hypereutrophication.
Fish community structure in high water temperature around Bontang Industrial Estate, East Kalimantan, Indonesia IWAN SUYATNA; A. SYAFEI SIDIK; ISMAIL FAHMY ALMADI; SAMSUL RIZAL; KOMSANAH SUKARTI
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170216

Abstract

Suyatna I, Sidik AS, Almadi FA, Rizal S, Sukarti K. 2016. Fish community structure in high water temperature around Bontang Industrial Estate, East Kalimantan, Indonesia. Biodiversitas 17: 558-564. We have conducted studies on fish community and their physical and chemical properties of coastal waters in the work area of the industrial estate from 2012 to 2014. At least four industries are known to use the coastal waters in cooling their processing equipments, the hot wastewater is then discharged back into the coastal environment. The current study reports the result of a survey undertaken around the work area of PT Blackbear Resources Indonesia. The result showed that high water temperature and tidal fluctuation are affecting the fish community in the area. By sampling results, during HWL of the spring tide at the maximum of water temperature of 35,9 oC, fish were the most populated and found 5999 ind. or 72,4% of the total number of 8291 fish. During LWL of the same tide type fish were observed 1931 ind oC, this ambient showed that the fish population drastically change in number and the environment became undesirable.
Floristic changes at Khersan Glacier Territory, Alamkuh Mountain, Central Alborz, North of Iran KOUROSH KAVOUSI; TAHER NEJADSATARI; YUNES ASRI; HAMID EJTEHADI; RAMEZAN ALI KHAVARI-NEJAD
Biodiversitas Journal of Biological Diversity Vol. 17 No. 1 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170102

Abstract

Kavousi K, Nejadsattari T, Asri Y, Ejtehadi H, Khavari-Nejad RA. 2016. Floristic changes at Khersan Glacier Territory, Alamkuh Mountain, Central Alborz, North of Iran. Biodiversitas 17: 11-15. Extensive investigation in subnival-nival area aroundKhersan glacier moraine introduced 71 vascular plant species. From this list 43 species have been listed in Noroozi et al. (2011) in “subnival-nival vascular plant species of Iran : a unique high mountain flora and its threat from climate warming” and the others are new for subnival-nival area of Iran. Among this plant list 31 species had introduced with Kotschy (1861a.), Bornmuller  (1906), Melchior (1937), Klein (1982),  European researchers and the other is named for the first time from Khersan glacier territory. Many species suchas Astragalus macrosemius, Pseudocamelina kleinii, Crepis multicaulis subsp. congesta, Didymophysa fedtschenkoana and Drabamelanopus due to glacier condition have very sensitive habitat, vulnerable and only gathered from restrict area with conservation value.Vegetation change happened in many nival and subnival areas with upward movement in the same habitat and movement from loweraltitude at alpine towards summit in subnival and nival. Carex oreophila, Campanula stevenii, Bromus brachystachyus, Oxytropisimmersa, Erigeron uniflorus, Trachydium pauciradiatum, Scorzonera radicosa and some other species are surprisingly movement tosubnival area and many nival and subnival species such as Didymophysa aucheri, Didymophysa fedtschenkoana, Dracocephalumaucheri and Arabis caucasica have come significantly upward in nival. The movement is different in all side of Khersan glacier morainein north, south and the east (besise moraine tongue) slops and limited with presence of soil natural generation and other ecological remarks. Limitation for soil generation starts at different altitude in northern, southern and eastern slopes of Khersan glacier valley. This study examined changes of flora in Khersan glacier territory during recent decades according to extensive data gathering, full list of Khersan glacier territory introduced Barbarea stricta, Draba melanopus, Pseudocamelina kleinii, Crepis multicaulis subsp. congesta as new report for flora of Iran and flora Iranica area.

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