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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,315 Documents
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Kaempferia sipraiana (Zingiberaceae), a new species from Thailand and a new record of Kaempferia pseudoparviflora for Myanmar THAWATPHONG BOONMA; SURAPON SAENSOUK; PIYAPORN SAENSOUK
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230456

Abstract

Abstract. Boonma T, Saensouk S, Saensouk P. 2022. Kaempferia sipraiana (Zingiberaceae), a new species from Thailand and a new record of Kaempferia pseudoparviflora for Myanmar. Biodiversitas 23: 2203-2211. Kaempferia sipraiana Boonma & Saensouk, a new species of Kaempferia subgenus Protanthium (Zingiberaceae) from northern Thailand and K. pseudoparviflora Saensouk P. & Saensouk, a new record species of Kaempferia subgenus Kaempferia for Myanmar are described, illustrated, and photographed. The dominant characters of Kaempferia sipraiana were leaves narrowly elliptic, green with short white stripes arranged parallel along the leaf edges, between the midrib and both sides of the edges, apex acuminate with slightly mucronate, base attenuate-oblique; peduncle glabrous; bracts apex mucronate, glabrous, red with dark red veins; bracteoles glabrous; floral tube shorter than calyx; calyx glabrous; staminodes oblanceolate, apex 3-lobes like curly brackets; labellum white at the base with pinkish purple in the middle gradually fade to pale pink and to reach to white tip and edge respectively, apex 3-lobes like curly brackets, each lobe 3.0–3.3 cm long; apex 4 lobes, outer lobes acute, inner lobes obtuse rarely combined to truncate; stigma with pink lips. The dominant characters of K. pseudoparviflora were one leaf and dark green with light grey markings, the inflorescence looks like inflorescence of K. parviflora. The information on vernacular name, distribution, phenology, ecology, conservation status, specimens examined, and an identification key to both species of Kaempferia in Thailand is revised and presented.
Callus induction with 6-BAP and IBA as a way to preserve Prunus ledebouriana (Rosaceae), and endemic plant of Altai and Tarbagatai, East Kazakhstan AIDYN ORAZOV; ANAR MYRZAGALIYEVA; NASHTAI MUKHITDINOV; SHYNAR TUSTUBAYEVA
Biodiversitas Journal of Biological Diversity Vol. 23 No. 6 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230645

Abstract

Abstract. Orazov A, Myrzagaliyeva A, Mukhitdinov N, Tustubayeva S. 2022. Callus induction with 6-BAP and IBA as a way to preserve Prunus ledebouriana (Rosaceae), and endemic plant of Altai and Tarbagatai, East Kazakhstan. Biodiversitas 23: 3178-3184. This article presents the results of the study of in vitro conditions for the cultivation and induction of callus tissues of a rare plant species Prunus ledebouriana(Schlecht.) Y.Y.Yao (Ledebour's almond), endemic plant to East Kazakhstan. For the first time, protocol and optimal composition of Murashige & Skoog (MS) were developed for obtaining calendemiclus tissues. The main indicator of successful introduction was the frequency of callus tissue formation in vitro. Two types of explants were used: the whole embryos and embryos with a removed root part. The removal of the root part inhibited the organogenesis of the embryonic root and the first shoot, which allowed the accumulation of nutrients for the growth of the callus mass and increased the frequency by 7.79±0.46%. Various exogenous phytohormones such as Kinetin, 6-BAP, GA, IBA were added to the MS culture medium. A decrease in Kinetin concentrations of 0.04 mg/L resulted in a lower intensity, but a higher frequency of formation (72.00±5.66%) and mass gain. The average concentration up to 0.5 mg/L of exogenous phytoregulators, such as GA and 6-BAP, resulted in frequency from 65.38±5.44% to 72.00±5.66%, the concentration of IBA up to 1 mg/L increased the frequency from 46.00±2.83 to 72.00±5.66%. The protocol for obtaining callus from an embryonic explant and the composition of the optimal nutrient medium for the induction of callusogenesis made it possible to obtain P. ledebouriana meristem tissues for further use in the development of callus cryopreservation technology.
The diversity of Carangidae (Carangiformes) was revealed by DNA barcoding collected from the traditional fish markets in Java and Bali, Indonesia SAPTO ANDRIYONO; MD. JOBAIDUL ALAM; LAKSMI SULMARTIWI; A. SHOFY MUBARAK; HERU PRAMONO; SUCIYONO SUCIYONO; GDE RAKA ANGGA KARTIKA; ALFI HERMAWATI WASKITA SARI; SINAR PAGI SEKTIANA
Biodiversitas Journal of Biological Diversity Vol. 23 No. 6 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230603

Abstract

Abstract. Andriyono S, Alam MJ, Sumartiwi L, Mubarak AS, Pramono H, Suciyono, Kartika GRA, Sari AHW, Sektiana SP. 2022. The diversity of Carangidae (Carangiformes) was revealed by DNA barcoding collected from the traditional fish markets in Java and Bali, Indonesia. Biodiversitas 23: 2799-2806. Biodiversity has been utilized in various ways, including in fulfilling the protein needs of fish for coastal communities. For the island of Java, with the largest population in Indonesia, the intensive fisheries in the Java Sea are sufficient to support domestic food needs. This Carangid fish diversity study in Java is the beginning to identify commercial fish in Indonesia, which have been exploited for a long time. In this study, identification was carried out molecularly in the Cytochrome c oxidase subunit I (COI) gene region with the universal primary set and found a great variety of Carangids fish species. Thirty-three fish specimens have been identified, indicating two suborder groups, Caranginae (31) and Scomberoidenae (2). The Caranginae suborder group is more dominated with the most types of which are Megalaspis cordyla (3), Atule mate (3), and Decapterus macarellus (4). Meanwhile, the Scomberoidinae suborder is Scomberoides commersonnianus and Scomberoides tala. This study also found two species that have the potential to be ciguatera poisoning agents that need to be watched out for (Decapterus macarellus and Selar crumenophthalmus). Food safety in the fisheries sector has received considerable attention for a long time. Fishery commodities in highly polluted habitats are among the chains in increasing heavy metals concentration and the other residual chemical compounds that may impact human health.
Short Communication: Occurrence of arbuscular mycorrhizal fungi associated with Casuarina equisetifolia in saline sandy environment, North Sumatra, Indonesia DELVIAN DELVIAN; ADRIAN HARTANTO
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230532

Abstract

Abstract. Delvian, Hartanto A. 2022. Short Communication: Occurrence of arbuscular mycorrhizal fungi associated with Casuarina equisetifolia in saline sandy environment, North Sumatra, Indonesia. Biodiversitas 23: 2520-2525. Arbuscular mycorrhizal fungi (AMF) form a mutualistic association with plant roots to cope in the extreme environments including the saline and sandy soils in the coastal areas. In this study, the occurrence of AMF associated with Casuarina equisetifolia that has been planted for coastal rehabilitation located at Cermin Beach, North Sumatra was investigated including its abiotic-biotic interactions from topsoils (0-20 cm) to subsoils (20-80 cm). A total of 10 AM fungal morphotypes were documented with Glomeraceae as the dominant AM fungal taxa (9 morphotypes) and a Glomoid morphotype exists in all soil depths. The number of AMF spores decreased as soil depth increased following other environmental conditions such as pH, soil P availability and soil moisture based on the result of Pearson’s correlation test. The results showed a moderate-to-low level of biodiversity of AMF based on Shannon’s diversity index. The findings revealed the vertical distribution of AMF in a saline environment and supported the planting of C. equisetifolia which successfully recruited the indigenous AMF to form a symbiosis to thrive in the stressful environment.
The relationship between seagrass abundance, distribution and the abiotic factors in Big Gifton and Abu Minqar islands, Red Sea, Egypt MOHAMED A.W.S. EBEAD; HUSSEIN N.M. HUSSEIN; HASSANIEN GOMAA; MOHAMED ABDELMOTTALEB; ALDOUSHY MAHDY
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230507

Abstract

Abstract. Ebead MAS, Hussein HNM, Gomaa H, Abdelmottaleb M, Mahdy A. 2022. The relationship between seagrass abundance, distribution and the abiotic factors in Big Gifton and Abu Minqar islands, Red Sea, Egypt. Biodiversitas 23: 2295-2303. Seagrass communities represent spatially complex and biomass-producing systems. The current research aims to understand the relationship between the abundance and distribution of seagrass communities and the abiotic factors in Big Gifton Island and Abu Minqar Island, Red Sea, Egypt. Seasonal seagrass samples were collected during 2019-2020 using line-transect and quadrat techniques. Canonical Correspondence Analysis was used to determine the effect of environmental factors on the occurrence and abundance of seagrass species. Three seagrass species, i.e., Halophila stipulacea, Halodule uninervis, and Halophila ovalis were recorded in the two islands. The most dominant seagrass species in both locations was H. stipulacea, which accounted for 54% in Big Gifton and 45% in Abu Minqar Island, while H. uninervis and H. ovalis were less numerous, with a percentage cover of 23 and 24%; and 8 and 5% in Big Gifton and Abu Minqar island, respectively. Halophila stipulacea was highest in the winter season with a percentage of 62 % and lowest in the spring (47%) in Big Gifton, whereas it was highest in the spring (62%) and lowest in the winter (47%) on Abu Minqar Island (22%). Statistical analysis showed highly significant differences between both sites and seasons in terms of conductivity, total dissolved solids, salinity, and the presence of H. uninervis and H. ovalis. On the other hand, there were non-significant differences between both sites and seasons in terms of temperatures, dissolved oxygen, oxidation-reduction potential, nitrite, nitrate, ammonia, phosphorus and the presence of H. stipulacea. Throughout the year, Big Gifton had a higher mean phosphate value than Abu Minqar Island and this may be related to the highest abundance of H. stipulacea in Big Gifton Island. The findings of this study may aid decision-makers in the management of natural resources, particularly the seagrass beds of Big Gifton and Abu Minqar Island.
Short Communication: Antioxidant activity and metabolite profiles of leaves and stem extracts of Vitex negundo MUHAMMAD ALFARABI; TURHADI TURHADI; TRINI SURYOWATI; NURIN AYU IMANELI; PRETTY OKTAVIANI SIHOMBING
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230550

Abstract

Abstract. Alfarabi M, Turhadi, Suryowati T, Imaneli NA, Sihombing PO. 2022. Short Communication: Antioxidant activity and metabolite profiles of leaves and stem extracts of Vitex negundo. Biodiversitas 23: 2663-2667. Many plantspecies could be used as natural sources of antioxidants, one of which is Vitex negundo or lagundi which grows widely in Southeast and South Asia. Due to the wide distribution of growth areas, so different habitats could be a factor causing variations in V. negundo bioactivity, especially antioxidant activity. In addition to environmental factors, extract derived from different plant parts could also contribute to variations in the content of metabolites that affect bioactivity. The objective of this study was to determine the antioxidant activity of leaf and stem extracts of V. negundo and evaluate the metabolites contained in the extracts. Antioxidant activity analysis was performed using the free radical 2,2-diphenyl-1-picrylhydrazyl (DPPH), and GC-MS analysis was used to identify bioactive metabolites. Leafand stem extract of V. negundo showed antioxidant activity directly proportional to the increasein extract concentration. A total of 8 metabolites were identified from the three extracts, i.e., acrolein, hydroquinone, sitosterol, naphthalene, pyrogallol, squalene, phytol, and hexadecenoic acid. There were correlations between antioxidant activity and the metabolites contained in the three extracts. It is suggested that the bioactivity of the extract is due to the interaction of these metabolites.
Phytochemicals, characterization and antimicrobial tests of red betel leaves on three solvent fractions as candidates for endometritis phytotherapy in Aceh cattle, Indonesia TEUKU ARMANSYAH; TONGKU NIZWAN SIREGAR; SUHARTONO SUHARTONO; AMALIA SUTRIANA
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230446

Abstract

Abstract. Armansyah T, Siregar TN, Suhartono, Sutriana A. 2022. Phytochemicals, characterization and antimicrobial tests of red betel leaves on three solvent fractions as candidates for endometritis phytotherapy in Aceh cattle, Indonesia. Biodiversitas 23: 2111-2117. The use of antibiotics to treat endometritis in cattle carries with it some weaknesses in the form of toxicity risks and unexpected side effects. The use of medicinal plants as antimicrobials and immunomodulators has the potential to be an alternative therapy. Red betel leaves could be considered viable candidates for phytotherapy in cattle with endometritis. This study aimed to determine the differences in biological activity and antibacterial ability of red betel leaf through the use of three different solvents, namely n-hexane, ethyl acetate, and ethanol. The highest yield of betel leaf extract was obtained from the ethyl acetate solvent fraction consisting of flavonoids, terpenoids, steroids, tannins, phenolics, and saponins. The highest biological compounds in red betel leaf identified by GC-MS in n-hexane solvent, ethyl acetate, and ethanol were 5-isobutylidene-N, N-dimethylbarbituric acid, benzenamine, 4,4' - (1,2-ethenediyl) bis-, and 9-octadecadienoic acid, respectively. Among the three solvent fractions of red betel leaf extract, it was observed that ethyl acetate exhibited higher antibacterial activity than hexane and ethanol. Hence, it can be concluded that ethyl acetate extract of red betel leaves solvent has secondary metabolites and better antibacterial potential than ethanol and n-hexane solvents.
Spatial distribution of tree species composition and carbon stock in Tozi tropical dry forest, Sinnar State, Sudan EMAD HASsAN ELAWAD YASIN; BUDI MULYANA
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230513

Abstract

Abstract. Yasin EHE, Mulyana B. 2022. Spatial distribution of tree species composition and carbon stock in Tozi tropical dry forest, Sinnar State, Sudan. Biodiversitas 23: 2359-2368. Dryland forest ecosystem in Sudan plays an important role, either ecologically or economically, for the community around the forest areas. However, land-use change, illegal logging and grazing have caused dryland forests in the country to degrade. The research aimed to investigate the species composition and carbon stock in a Tozi tropical dry forest (TTDF), a typical dryland forest ecosystem in Sinnar state, Sudan. A total of 306 circular sample plots (1000 m2 for each) were established using a systematic sampling grid method. The distance between plots was 400 m and between survey lines 500 m. In each plot, all living trees were identified and counted, and their diameter at the breast height (DBH) was recorded. Research findings showed that there were 2,339 individual trees representing four species (Acacia seyal, Balanites aegyptiaca, Acacia senegal and Acacia mellifera) that belong to two families. The B. aegyptiaca and A. seyal were the dominant species widely distributed in the TTDF. The average tree density was 175 trees/ha and the Shannon-Weiner index for trees diversity was 0.264. For the seedlings stage, A. mellifera showed a high value of frequency and density, followed by B. aegyptiaca and A. seyal. The structure of seedlings, saplings, and adults trees formed a reverse J-shape in which the density of seedlings was the highest and followed by saplings and adult trees. Carbon stock of A. seyal, B. aegyptiaca, A. senegal, and A. mellifera were 990.95, 2602.78, 1085.82, and 249.20 kg C/ha, respectively. Spatial analysis showed that sites composed of three species resulted in the highest above ground carbon stock compared to single species, two species, and four species compositions.
Assessing soil properties in various agroforestry lands in Kuningan District, West Java, Indonesia using Visual Evaluation of Soil Structure (VESS) TEGUH JATI PURNAMA; NURHENI WIJAYANTO; BASUKI WASIS
Biodiversitas Journal of Biological Diversity Vol. 23 No. 6 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230628

Abstract

Abstract. Purnama TJ, Wijayanto N, Wasis B. 2022. Assessing soil properties in various agroforestry lands in Kuningan District, West Java, Indonesia using Visual Evaluation of Soil Structure (VESS). Biodiversitas 23: 3012-3021. Land conversion from the forest into intensive agriculture and plantation causes soil degradation. Agroforestry is promoted as a win-win solution to land management that conserves and improves soil quality using a tree-based farming system. This study aimed to evaluate the physical soil quality of various land-use patterns, including agroforestry in Kuningan District, West Java. In doing so, we employed the Visual Evaluation of Soil Structure (VESS) method to be compared with laboratory analysis. Soil physical quality of seven land-use types was evaluated, namely natural forest, complex agroforestry of coffee, complex agroforestry of galangal, simple agroforestry of coffee, simple agroforestry of sweet potato, coffee monoculture and maize monoculture. The VESS technique was used to assess the quality of soil structure, whereas the conventional soil analysis method was used to determine soil bulk density and porosity. Other soil properties including soil organic carbon, cation-exchange capacity (CEC), pH, and soil macrofauna and mesofauna as well as dry litter weight, vegetation composition and individuals’ density were also obtained. The results of the VESS method (reflected as Sq value) revealed that the soil physical quality varied, ranging from Sq value of 1.16-3.1. Complex agroforestry of galangal had Sq value of 1.56 which was not significantly different from that of natural forest land (Sq 1.16), implying that both land uses had a similar physical soil quality. The VESS score and the soil property parameters have a reasonable correlation (r) (BD = 0.80, soil porosity = -0.80, SOC = -0.88, CEC = 0.89, diversity of fauna soil index = 0.82). This study shows that a multi-strata agroforestry system can be a strategy for recovering soil quality on degraded lands, and the VESS method can be used to analyze soil quality in these areas.
Assessment of insects diversity with the influence of industrial pollutants in agricultural zones of District Sialkot, Pakistan AYESHA ASGHAR; OMEMA QADEER; SAJIDA MUSHTAQ; SADIA MAALIK; WAQAR MAJEED; NAHEED BANO; SHAHLA NARGIS
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230440

Abstract

Abstract. Asghar A, Qadeer O, Mushtaq S, Maalik S, Majeed W, Bano N, Nargis S. 2022. Assessment of insects diversity with the influence of industrial pollutants in agricultural zones of District Sialkot, Pakistan. Biodiversitas 23: 2047-2053. Insects are the most important creatures on earth due to their multifunctional role in the environment by providing different services such as biological indicators, decomposers, pollinators, scavengers, pests, and predators agroecosystem. However, with time due to anthropogenic activities such as environmental pollution, industrial waste, and the use of effluents for agriculture, insect fauna has been facing a dramatic threat to their diversity, particularly in most polluted areas. The present study was designed to find insects diversity variation under polluted environments (heavy metals) in agriculture fields having brassica and Rice crops. Two different sites, the tannery and non-tannery areas were selected to sample insects. The total number of insects found in tannery area fields were 2195 and 3753 from the non-tannery area. The abundance of Melanoplus bivittatus (Say, 1825) was highest in the non-tannery area, and Acrida exaltata (Walker, 1859) was highest in tannery area fields. From the tannery area and non-tannery area, the maximum abundance of 32% and 37% were found for order orthoptera. The cadmium concentration in tannery rice crops was 0.626 ppm, and brassica concentration was 0.315 ppm. The cadmium concentration in non-tannery area samples was 0.115 ppm for rice and 0.101 ppm for brassica plants, while 0.1231 ppm for rice and 0.104 ppm for brassica insects. The lead concentration in tannery areas of rice crops was 0.637 ppm, and brassica concentration was 0.672 ppm. The lead concentration in non-tannery area samples was 0.324 ppm for rice and 0.267 ppm for brassica plants, while 0.214 ppm for rice and 0.266 ppm for brassica insects. The diversity and richness were recorded at 3.11 and 3.525 for rice and 3.124 and 3.913 for brassica fields. The species maximum was seen in the non-tannery area, and less abundance was recorded in the tannery area. It is further suggested that preventive measures should be taken to protect insect diversity from balancing nature's ecological balance.

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