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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Review: A working checklist of the freshwater fish diversity for habitat management and conservation work in Sabah, Malaysia, North Borneo CASEY KEAT-CHUAN NG; FATIMAH ABDULLAH; HELENA BIUN; MOHAMMAD KHADAFI IBRAHIM; SHUHADAH MUSTAPHA; AHEMAD SADE
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180217

Abstract

Ng CKC, Abdullah F, Biun H, Ibrahim MK, Mustapha S, Sade A. 2017. Review: A working checklist of the freshwater fish diversity for habitat management and conservation work in Sabah, Malaysia, North Borneo. Biodiversitas 18: 560-574. Prioritization of freshwater habitat management and conservation is dependent on the availability of species baseline information at regional level. However, such information has not been updated since 2002 in Sabah. Thus the objective of this paper is to present the latest working checklist of freshwater ichthyofauna known so far in the state. A literature review of 68 studies was conducted focusing on the latest valid binomial nomenclature, locality and conservation status. A total of 166 valid species, namely 150 native species and 16 introduced species, were deduced from the literature. Native species comprised of 10 orders, 27 families and 75 genera while introduced species were from four orders, seven families and 14 genera. The review revealed 103 species (68.6% of native species) were yet to be assessed for the IUCN Red List and 11 species (7.3%) were identified as Data Deficient by IUCN. Some taxonomic discrepancies were also found and discussed. Many areas in Sabah remain poorly inventoried due to unequal sampling effort, biophysical and cultural challenges. The species list proposed herein is tentative at best and the number of species is expected to increase as more surveys are conducted in the near future.
Short Communication: Growth analysis of sentang (Azadirachta excelsa) in agroforestry system ARIFA MULYESTHI RAHMAWATHI; NURHENI WIJAYANTO; ARUM SEKAR WULANDARI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180220

Abstract

Rahmawathi AM, Wijayanto N, Wulandari AS. 2017. Short Communication: Growth analysis of sentang (Azadirachta excelsa) in agroforestry system. Biodiversitas 18: 589-592. Sentang is one of forestry plants which can be planted in agroforestry system. It is one of the important medicinal plants grown in different agroforestry systems and contains an active compound of azadirachtin. It has cone crown and balance branch that makes it suitable to be cultivated in agroforestry system which utilizes lower stratum or ground. This research aimed to analyze growth and nutrient content of sentang in agroforestry and monoculture system. Plantation site was in Conservation Unit Research Center for Biopharmaceutical IPB. The sentang was two years old. The design was complete randomized design with one factor (cropping system) and two treatments (agroforestry and monoculture). The results showed the increase of sentang height was higher in agroforestry system than the monoculture due to additional nutrition obtained by sentang in agroforestry system derived from fertilizing activity at the beginning of soybean planting. Nutrient content of sentang was higher in agroforestry plot than monoculture. Fertilizing activity of soybean led to an increase of sentang in agroforestry system.
Inbreeding depression level of post-larvae freshwater prawn (Macrobrachium rosenbergii) from several hatcheries in Java, Indonesia ROBI BINUR; ADI PANCORO
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180223

Abstract

Binur R, Pancoro A. 2017. Inbreeding depression level of post-larvae freshwater prawn (Macrobrachium rosenbergii) from several hatcheries in Java, Indonesia. Biodiversitas 18: 609-618. Inbreeding accumulation will tend to reduce genetic variation or depressed of the prawn fry produced. This problem has caused a decrease in production and quality of prawns culture in Indonesia. The purpose of this study is to measure the level of inbreeding depression prawn fry generated from several hatcheries in Java by microsatellite markers. There is four microsatellite locus to be used i.e Prk9A/T1, Prk4G/T1, TGFP16, and Mr8-88. The amplification of fourth locus using PCR with 6-carboxy-fluorescine (6-FAM) label. The number of alleles (Na) from fourth locus is Mr8-88 (11 alleles), TGFP16 (10 alleles), Prk4G/T1 (9 alleles), dan Prk9A/T1 (5 alleles), respectively. The level of polymorphism locus from highest to lowest is locus Prk4G/T1 (0.703), Prk9A/T1 (0.507), TGFP16 (0.410), and Mr8-88 (0.370), respectively. Inbreeding depression level of postlarvae (PL) M. rosenbergii tend to moderate with BBI Ciamis (He 0.444), BBUG Samas (He 0.514), LRPTBPAT Sukamandi (He 0.519), and UPBL Probolinggo (He 0.530), respectively. AMOVA analysis showed about 8.0% genetic variation among populations. From these results, it can be concluded that the PL produced indicated have been depressed. Post-larvae prawns produced from fourth hatcheries is not recommended to be a broodstock but can be used for cultivation for farmers.
Parasitoid community structure of leaf miner Liriomyza spp. (Diptera: Agromyzidae) and the rate of parasitization on vegetable crops in Lesser Sunda Islands, Indonesia SRI WAHYUNI; I WAYAN SUPARTHA; ROSICHON UBAIDILLAH; I NYOMAN WIJAYA
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180221

Abstract

Wahyuni S, Supartha IW, Ubaidillah R, Wijaya IN. 2017. Parasitoid community structure of leafminer Liriomyza spp. (Diptera: Agromyzidae) and the rate of parasitization on vegetable crops in Lesser Sunda Islands, Indonesia. Biodiversitas 18: 593-600. Parasitoids such as leafminer have long been known to play an important role in reducing potential pest populations. However, detailed information about the parasitoid community in many agroecosystems is still very limited. To attempt to address this data gap, we assessed the rate of parasitism, diversity, abundance and dominance of leafminer parasitoids in different agroecosystems. The survey was carried out from February to July 2015 in Lesser Sunda islands of Lombok, Sumbawa, Flores and Timor. Samples were taken from three different vegetable ecosystem types the forest edge (H1), agricultural (H2) and settlement (H3). In each ecosystem, 50 leaves were sampled from 20 kinds of vegetable crops attacked by Liriomyza spp. Samples were taken five times per location every week. The sampling results found three distinct species of leafminer flies present: Liriomyza huidobrensis, L. sativae, and Chromatomyia horticola. The sampling also successfully identified 7 other parasitoids with parasitization rates between 0.09%-32.58% i.e. Neochrysocharis formosa (8.20%-32.58%), Hemiptarsenus varicornis (4.57%-24.21%), Opius chromatomyiae (0.88%-22.35%), Opius dissitus (0.49%- 5.08%), Neochrysocharis okazakii (0.69 %-1.24%), Asecodes deluchii (0.51%-5.89%) and Gronotoma micromorpha (0.09%-0.34%). Indices of abundance (R) and diversity (H') were also calculated, with the highest species abundance being found on the Lombok and the lowest on the Sumbawa. Neochrysocharis formosa abundance was found in all the islands sampled, while the dominance (D = 0.43) was found on the Sumbawa. N. formosa was found to have the highest population abundance and parasitism rate, and was found on every island in Lesser Sunda including on the Lombok (1853 adult; 31.16%), Sumbawa (472 adult; 8.2%), Flores (1117 adult; 15.96 %) and Timor (984 adult; 22.18%). The results of these studies suggest a strong need for effective pest control policies for Liriomyza spp. in the research locations, as well as for other vegetable crops in Indonesia
Diversity and community structure of fish, plankton and benthos in Karangsong Mangrove Conservation Areas, Indramayu, West Java, Indonesia VIVIN SILVALIANDRA SIHOMBING; HENDRA GUNAWAN; RENY SAWITRI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180222

Abstract

Sihombing VS, Gunawan H, Sawitri R.2017. Diversity and community structure of fish, plankton and benthos in Karangsong Mangrove Conservation Areas, Indramayu, West Java, Indonesia. Biodiversitas 18: 601-608. The Karangsong Mangrove Conservation Area in Indramayu District, West Java, Indonesia, extending across 20 hectares of coastal land, has undergone eight years of managed revegetation. It has a variety of productive habitats that support the availability of fish resources. The research described in this paper was conducted in July 2016 with the purpose of assessing the diversity, evenness, and structure of fish, plankton and benthos communities as an indicator of the effectiveness of the rehabilitation of the mangrove ecosystem. The fish, benthos, and plankton were collected and analyzed in the Biotrop Laboratories. Fish sampling was carried out using a gill net with mesh size of 25 mm, and with traps. Juvenile fish were collected using a fish net with mesh size of 15 mm, by combing the water column horizontally for 10-15 minutes in the morning and afternoon. For plankton sampling a net No. 25 was used, while samples of benthos were collected using an Ekman Grab sampler. To calculate the community structure and diversity of fish, the study used ecological indices (abundance, dominance, constancy and ecological significance) and diversity indices (Shannon and Simpson diversity). A total of 413 individuals were obtained from 18 fish species, representing 16 families. Family Lutjanidae and Acanthuridae had the highest representative number of species and Pomacentridae showed the highest relative abundance of individuals. The value for the fish diversity index was 2.44 and for the species evenness index was 0.84. The fish population consisted of 44.44% omnivores, 38.89% carnivores and 16.67% herbivores/ detritivores. The highest density of plankton was accounted for by Bacillariophyceae (78.57%), followed by Chlorophyceae (14.29%) and Zooplankton (7.14%). The diversity index for the plankton (H) ranged between 1.040 and 1.462 across habitats, while the evenness index (E) ranged between 0.144 and 1.22. The benthos consisted of Gastropods (83.58%), Crustacea (3.28%), Palaemonidae (1.64%) and Oligochaeta (11.48%). The diversity index for the benthos ranged from 0. 939 to 1. 199 and the evenness index from 0.158 to 0.207. Hence, it may infer from the domination of the environment by Bacillariophyceae and Gastropods, and the low values for diversity index and evenness index, that the area is not particularly good as a fish nursery and breeding habitat. Nevertheless, there are two species of fish that exhibit potential productivity in every habitat; they are Chanos chanos and Scatophagus argus.
Short Communication: Temporal and spatial variations of Rhodophyta communities along the Chabahar Coast, Oman Sea ABEDEH JAMSHIDZEHI; NEDA MEHDIPOUR; NASER JAFARI; MAHMOUDREZA AZINI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180224

Abstract

Jamshidzehi A, Mehdipour N, Jafari N, Azini M. 2017. Short Communication: Temporal and spatial variations of Rhodophyta communities along the Chabahar Coast, Oman Sea. Biodiversitas 18: 619-622. Monthly sampling of macroalgae was carried out from January 2014 to November 2014 in Iranian Coasts of Oman Sea along Sistan and Baluchistan province coastal waters. Monthly sampling was done by a number of transects with equal distance and in randomly chosen 50×50cm quadrates. The samples were transferred to the lab and after cleaning and separating, identified up to species level. A total of 17 species of Rhodophyta were recognized, and the most observed families included: Gelidiaceae, Gracilariaceae, Hypneaceae and Rhodomelaceae. The maximum algal biomass and of species belonged to Gracilaria corticata. Laurencia obtusa, Hypnea valentiae and Gracilaria corticata observed in all stations and seasons. Laurencia obtusa, Hypnea valentiae and Gracilaria corticata observed in all stations and seasons. Comparing to the previous study in the Chabahar Coast, steep decline in the number of observed macroalgae species in this region was observed.
Short Communication: Characteristic of Anodendron paniculatum (Apocynaceae) in Mount Nglanggeran, Yogyakarta, Indonesia WIDODO WIDODO; MUHAMMAD JA’FAR LUTHFI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180228

Abstract

Widodo, Luthfi MJ. 2017. Short Communication: Characteristic of Anodendron paniculatum (Apocynaceae) in Mount Nglanggeran, Yogyakarta, Indonesia. Biodiversitas 18: 645-651. Anodendron paniculatum was found in climbing route of Mount Nglanggeran, Yogyakarta at coordinates location of 7°50'29.6" S and 110°32'19.5" E, at an altitude of 480 masl. The identification of A. paniculatum was conducted based on Museum Nasional d'Histoire Naturelle (MNHN), Paris, France with collection number of herbarium of P00256390. Information about A. paniculatum in Indonesia was very rare, even almost non-existent. This study aimed to describe the morphological characteristics of A. paniculatum included the morphology of flower, flower bud, leaf and stem. The study was conducted through periodically visiting at the research location. The observation was conducted to flowering period, the structure of flower and fruit and other supporting data. The specimen of samples were collected for herbarium collection and observation in the laboratory. The observation in the laboratory was conducted on morphological characteristics of habitus, stem, leaf and flower. The data were compared with literature and existing herbarium collections. The results of the study showed that the specimen of A. paniculatum is a liana, inflorescence in leaf axil and the end of branching, the size of panicle is about 15 cm, consisted of small yellowish tubular flowers with each flower has a length of 1.3 cm.
Population dynamics parameters of Silver Pomfret Pampus argenteus in Iranian waters of the northern Persian Gulf and Oman Sea MEHRAN PARSA; MAHSA MAHMOUDI KHOSHDAREHGI; ALI NEKURO; MOJTABA POULADI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180226

Abstract

Parsa M, Mahmoudi Khoshdarehgi M, Nekuro A, Pouladi M. 2017. Population dynamics parameters of Silver Pomfret Pampus argenteus in Iranian waters of the northern Persian Gulf and Oman Sea. Biodiversitas 18: 633-638. This research represents population dynamics parameters of Pampus argenteus including age, growth and mortality parameters in Iranian waters of the northern Persian Gulf and Oman Sea using length-frequency data. Fork length and total weight data collecting of P. argenteus were conducted from April 2014 to March 2015. A total of 1919 specimen were collected ranging from 10 to 32 cm fork length and 35 to 1075 g total weight. The mean length and weight were recorded to be 19.97±0.12 cm and 272.04±7.43 g, respectively. The relationship between fork length and total weight was determined as W = 0.0231FL3.141 (R2=0.9932, n= 643) and indicated that P. argenteus grew allometrically in the study region. The Von Bertalanffy growth function estimates were obtained as: L∞ = 32.55 cm, K = 0.3 year-1, t0=-0.54 years and ϕ′= 2.5. The infinite weight of P. argenteus was estimated as 1301.77 g. The annual instantaneous rate of total mortality (Z) was 1.55 year-1, the natural mortality (M) was 0.75 year-1 and the fishing mortality (F) was 0.78 year-1. Furthermore, the exploitation rate (E) was calculated as 0.51. Results of the obtained exploitation rate showed that P. argenteus was fully exploited in the study region.
A biophysical observation of Mahakam River around Tanjung Una of Kutai Kartanegara, Indonesia IWAN SUYATNA; MISLAN MISLAN; ANDRY RAHMAN; ARY WINATA; YUNI IRAWATI WIJAYA
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180225

Abstract

Suyatna, I, Mislan. A. Rahman A. Winta Wijaya YI. 2017. A biophysical observation of Mahakam River around Tanjung Una of Kutai Kartanegara, Indonesia. Biodiversitas 18: 623-632. The aim of this study is to dig up more information about the biophysical conditions of Mahakam River around Tanjung Una of Kutai Kartanegara, Indonesia including the fishery potential in these locations. The observations were conducted in two periods. Through field surveys, the sample of fish and shrimp were caught with pulled nets from many stations, while to know the water quality around the location of the observation, water sampling was conducted and then the sample was brought to a laboratory to be analyzed in order to find out its quality. On the scale of taxonomy and ecology, community structure of fish and shrimp from 21 species of fish consisted of 17 families, five orders, and one class. For the shrimp, it was only four identified species of the genus Macrobrachium family Palaemonidae and genus Metapenaeus family Penaeidae ordo Decapoda class Malacostraca. The distribution of the length and weight of fish and shrimp was found out to be small. The value of the diversity index between the fish and shrimp showed low to moderate with a value of D: 0.150 to 0.601; H': from 0.986 to 2.089, E: 0.268 to 0.621 and Margalef: 1,475-2,345 for the fish and a value of D: 0.325 to 0.688, H': from 0.615 to 1.205, E: 0.462 to 0.834 and Margalef: from 0.490 to 0.614 for the shrimp. The index indicated that there were species that tend to dominate other species. The species richness was low. Physical-chemical properties and heavy metal content in the Mahakam River around Tanjung Una were generally still below the quality standard. The observations concluded that the number of marine fish species was found two times higher than the river fish species, but not to the number of population.
Short Communication: Description and molecular diagnosis of a new species of Delphinium (Ranunculaceae) from Northeast Iran MASOOMEH HASANBARANI; FARIBA SHARIFNIA; TAHER NEJADSATTARI; MOSTAFA ASSADI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180227

Abstract

Hasanbarani M, Sharifnia F, Nejadsattari T, Assadi M. 2017. Short Communication: Description and molecular diagnosis of a new species of Delphinium (Ranunculaceae) from Northeast Iran. Biodiversitas 18: 639-644. Delphinium khorasanicum Sharifnia & Hasanbarani sp. nov., a species distributed in NE Iran, is described and provided with a molecular diagnosis. It is morphologically related to D. turkmenum Lipsky. The most important morphological differences between the new species and D. turkmenum are mainly in the shape of spur, plant length and epidermal patterns. This species is compared with close taxa (they are close and relative in point of view morphologically, geographically and molecular characters). Illustration and distribution map are also presented.

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