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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Short Communication: Coral reefs condition in Aceh Barat, Indonesia RUESMA AZHADIN ANNAS; ZAINAL A. MUCHLISIN; MUHAMMAD A. SARONG
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180210

Abstract

Annas RA, Muchlisin ZA, Sarong MA. 2017. Short Communication: Coral reefs condition in Aceh Barat, Indonesia. Biodiversitas 18: 514-519. The objective of the present study was to assess the condition of the coral reef ecosystems in the western region of Aceh Province. The study was conducted from September to November 2015 in two locations: Johan Pahlawan and Samatiga Subdistricts, and every location has two sampling sites. The Point Intercept Transect (PIT) method was used in this study. A total of two transects were used at 4-meter and 8-meter depth, respectively. The measured parameters were the percentage of live and dead coral covers, the number of genera, growth forms, species diversity, and dominance indices. Live corals were only found in Lhok Bubon, Samatiga Subdistrict, at 4-meter depth with a coral cover of 17.61%, and no corals were found at 8 meters. In addition, no live corals were also detected in Suak Indrapuri, Johan Pahlawan Subdistrict, at both 4-and 8-meter depth. There were five genera recorded in Lhok Bubon: Favites at 3.77% cover, Montastraea at 1.89% cover, and Montipora and Porites with coral covers of 8.18 and 3.14%, respectively. The diversity and dominance indices of live corals in Lhok Bubon were 1.94 and 0.45, respectively, indicating a low degree of diversity and predominant of Montipora. It is concluded that coral reefs condition in Aceh Barat was categorized as a severely damaged condition.
Short Communication: Assessment of genetic diversity in Lai (Durio kutejensis) local cultivars of Batuah (Indonesia) using ISSR marker FITRI HANDAYANI; SRIWULAN PAMUJI RAHAYU
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180212

Abstract

Handayani F, Rahayu SP. 2017. Assessment of genetic diversity in Lai (Durio kutejensis) local cultivars of Batuah (Indonesia) using ISSR marker. Biodiversitas 18: 525-529. Lai is an indigenous germplasm of Kalimantan which has potency to be developed as superior tropical fruit. Lai has attractive flesh color from yellow to reddish orange which represents the high content of carotene with smooth aroma or odorless fruit, and fruit storage period which longer than durian. Unfortunately, nowadays there is limited scientific information about its genetic diversity as important basic information for genetic conservation and breeding program. Batuah village in Kutai Kartanegara District is one of the center of origin and center of diversity of Lai in East Kalimantan, Indonesia which has many local cultivars with superior traits. The aim of this research was to study the genetic diversity of eight Lai local cultivars of Batuah village using molecular marker of ISSR. The total genomic DNA of eight Lai cultivars was isolated and was then used as template in the PCR amplification reaction using 10 ISSR primers. The result shows that similarity coefficient of eight Lai cultivars ranged between 0,34 and 0,58. Seven cultivars were grouped in the same cluster with 0,44 of similarity coefficient, while Lai Durian was separated in 0,34 of similarity coefficient. Genetically, the most similar existing cultivars are Lai Kuning and Lai Belimbing with the similarity coefficient of 0,58.
Short Communication: Crab species distribution under mangrove stands in Tabongo, Gorontalo Province, Indonesia ABUBAKAR SIDIK KATILI; RAMLI UTINA; NURKNALIXA L. MOPANGGA
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180211

Abstract

Katili AS, Utina R, Mopangga NL. 2017. Short Communication: Crab species distribution under mangrove stands in Tabongo, Gorontalo Province, Indonesia. Biodiversitas 18: 520-524. The aim of the study was to determine the distribution pattern of crabs under mangrove stands in the Tabongo Village, Dulupi Sub-district, Boalemo District, Gorontalo Province, Indonesia. The survey method was used for the study and data retrieved by using line transect techniques. The distribution pattern was calculated by using an index with the formula Morisita distribution patterns. The environmental factors such as temperature, salinity, and pH were measured at each stand of mangroves. The results showed that the distribution pattern of crabs in stands of Rhizophora mucronata with a value of distribution index highest for Uca triangularis (Id = 1.4) followed by Scylla olivacea (Id = 1.24), Uca annulipes (Id = 1.2) and Uca dussumieri (Id = 1.12). Uca vocans (Id = 1.08) showed the lowest value of distribution index. In Ceriops tagal stand, Uca triangularis’s value of distribution index was highest (Id = 1.24) followed by Uca dussumieri (id = 1.15), Scylla olivacea (Id = 1.08) and Uca annulipes (Id = 1.06). The lowest value was noted in Uca vocans (Id = 1,04). In stands of Rhizophora stylosa value of distribution index was highest for Uca dussumieri (Id = 1.16) followed by Scylla olivacea (Id = 1.12) and Uca triangularis (Id = 1,12). The lowest value of distribution index was noted in Uca vocans and Uca annulipes (Id = 1.08). In stands of Sonneratia alba, the value of distribution index was highest for species Uca triangularis (Id = 1.2), Uca vocans (Id = 1,12) and Uca dussumieri (Id = 1.12). The lowest was noted in Scylla olivacea (Id = 1.08). Besides, the value of distribution index showed that the pattern of distribution in the study area was clumped.
Assessing phytoplankton community structure in relation to hydrographic parameters and seasonal variation (Pre & Post Monsoon) M. REZA MIRZAEI; FERESHTEH SERAJI; ELNAZ ERFANIFAR; TEYMOUR AMIN RAD; ZAHRA AMINIKHOEI; BIZHAN AZHANG
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180209

Abstract

Mirzaei MR, Seraji F, Erfani E, Rad TA, Aminikhoei Z, Azhang B. 2017. Assessing phytoplankton community structure in relation to hydrographic parameters and seasonal variation (Pre & Post Monsoon). Biodiversitas 18: 507-513. The present study is conducted to assess hydrographical parameters, phytoplankton composition and the relationship between physicochemical parameters and phytoplankton assemblages along Chabahar coastal waters, South coast of Iran. Based on the collected samples from four stations, all the hydrographical parameters such as sea surface temperature, salinity, pH, DO and nitrate, inorganic phosphate, silicate, and phytoplankton assemblages were studied for five months (from April 2014 to August 2014). A total of 165 phytoplankton groups/taxa were observed in which the Dinophyceae formed the dominant group in all seasons. During the pre-monsoon season, Dinophyceae (56.5%) was the most abundant phytoplankton group followed by Bacillariophyceae (40.8%), Cyanophyceae (1.7 %) and Dictyochophyceae (0.8%). Meanwhile, in the post-monsoon season, Dinophyceae was dominant (49.5%), followed by Bacillariophyceae (46.7%), Cyanophyceae (1.8%), and Dictyochophyceae (1.8%). The highest phytoplankton density was in mid-May (19584953± 345182 cell per litter) and the lowest was in late July (163928± 1790 cells per liter). Salinity, nitrate, phosphate, silicate showed significant variation (p<0.05) among seasons while pH, seawater temperature, dissolve oxygen did not show significant differences in all stations over the study periods (p<0.05). Phytoplankton density correlated positively with water temperature and salinity. Results showed an increased concentration in phytoplankton density during Pre-monsoon season followed by Post-monsoon and monsoon season.
The inventory of edible mushroom in Kamojang Nature Reserve and Nature Park, West Java, Indonesia PUTUT FAJAR ARKO; BETTY MAYAWATIE MARZUKI; JOKO KUSMORO
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180213

Abstract

Arko PF, Marzuki BM, Kusmoro J. 2017. The inventory of edible mushroom in Kamojang Nature Reserve and Nature Park, West Java, Indonesia. Biodiversitas 18: 530-540. Research on the potential of macroscopic fungi in the forests of Indonesia as food and medicine still hasn't much been done. Until now, the biodiversity data of macroscopic fungi are destitute. On the other hand, we are faced with the rapid rate of decline of biodiversity both by natural processes and by human activities. The purpose of this study was to determine the species of edible mushroom in Kamojang Natural Reserves and Nature Park, Bandung-Garut Districts, West Java. The method used in this research were exploration method assisted with line transect and semi-structural interviews to people around Kamojang Nature Reserves and Nature Parks. The results of the study were obtained and analyzed descriptively. Thirty-five species of macroscopic fungi that categorized as edible mushroom were found in Kamojang Nature Reserves and Nature Parks, i.e. Armillaria sp., Auricularia sp., two species of Cerrena, Clavulina sp., Fistulina hepatica, two species of Ganoderma, Inocybe sp., four species of Marasmiellus, four species of Marasmius, Microporus xanthopus, Oudemansiella sp., Phellinus sp., Phlebia sp., Pleurotus sp., Pluteus thomsonii, Polyporus meridionalis, Polyporus tenuiculus, Polyporus udus, Postia sp., Schizophyllum commune, Stereum rameale, Stereum gausapatum, Stereum ostrea, Suillus sp., Xylaria longipes, and two species of Xylaria. From the 35 species of edible mushroom, only ten species that had been used by villagers in Kamojang as food and medicine, i.e. Armillaria sp., Auricularia sp., Fistulina hepatica, both species of Ganoderma, Marasmiellus sp.2, Oudemansiella sp., Polyporus meridionalis, Polyporus tenuiculus, and Polyporus udus.
Social capital of community forest management on Nusapati Village, Mempawah District, West Kalimantan, Indonesia EMI ROSLINDA; WIWIK EKYASTUTI; SITI MASITOH KARTIKAWATI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180215

Abstract

Roslinda E, Ekyastuti E, Kartikawati SM. 2017. Social capital of community forest management on Nusapati Village, Mempawah District, West Kalimantan, Indonesia. Biodiversitas 18: 548-554. Community forest management has been recognized over the past two decades as a potential approach for achieving forest sustainability. In Indonesia, community forestry was developed by a government program with limited funds. Community forestry in Nusapati village was one of many successful community forest programs. The aim of this study was to explore how social capital developed in Nusapati community relating to community forest management was developed and reinforced. The survey method was used in this research. Data collection was undertaken through general field observation, key informant interviews, and semi-structured respondent interviews with a questionnaire. The results show that social capital was significantly correlated to trust, social norms, and social networks in the development of community forestry. This study concludes that social capital of Nusapati community is strong, which suggest that government intervention through development programs should take social capital into consideration.
Using economic values to evaluate management options for fish biodiversity in the Sikakap Strait, Indonesia ACHMAD RIZAL; LANTUN PARADHITA DEWANTI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180218

Abstract

Rizal A, Dewanti LP. 2017. Using economic values to evaluate management options for fish biodiversity in the Sikakap Strait, Indonesia. Biodiversitas 18: 575-581. The unavailability of total economic values of fish biodiversity in Sikakap Strait, Mentawai District of West Sumatra, Indonesia both in the short and long term, has created the rejection of their existences in the coastal area. The purpose of this study was to estimate the total economic value of fish biodiversity in Sikakap Strait, West Sumatra using total economic value concepts. The fish biodiversity’s total economic value is expressed by estimating the use value, indirect use value and non-use value. The study used benefit transfer and survey methods using secondary data to estimate the total economic value of fish biodiversity. The total economic value of the fish biodiversity of USD 745,602 per year was calculated by summing the direct use value (USD 4,262,884 per year), indirect use value (USD 24,560 per year), and non-use value (USD 575 per year). The research hypothesis that the fish biodiversity’s sustainable resource management has economic value is supported. These values help to make decisions about allocating resources between competing uses.
Short Communication: Cytological studies on black orchid hybrid (Coelogyne pandurata Lindley) SRI HARTATI; NANDARIYAH NANDARIYAH; AHMAD YUNUS; DJATI W. DJOAR
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180216

Abstract

Hartati S, Nandariyah, Yunus A, Djoar DW. 2017. Cytological studies on black orchid hybrid (Coelogyne pandurata Lindley). Biodiversitas 18: 555-559. Black orchid (Coelogyne pandurata Lindley) is one of the rare species of Coelogyne Lindley, protected by the government of Indonesia. The cytological character of orchid is very important to study to support the success of breeding. The study aimed to assess the chromosomal number, karyotype pattern and ploidy level the hybrid of Black Orchid (Coelogyne pandurata). This study shows that the chromosomal number of the hybrid of Coelogyne pandurata (2n = 36) >< Coelogyne rumphii (2n = 72) is 2n = 54. Ploidy analysis by flow cytometry shows that hybrid shows triploid (2n = 3x = 54) different from the parent Coelogyne pandurata which is diploid (2n = 2x = 36) and the parent Coelogyne rumphii which is tetraploid (2n = 4x = 72). However, both parents and their hybrid performed the same karyotype pattern, which is metacentric. The chromosome size showed a variation in length from the longest Coelogyne pandurata 2.98 ± 0.15 µm to the shortest Coelogyne rumphii 2.24 ± 0.15 µm. The hybrids have a range of 2.50 ± 0,10 µm to 2.85 ± 0.10 µm. Karyotype patterns of black orchid (C. pandurata), C. rumphii and the hybridis metacentric.
The potential of various isolates of Spodoptera litura Nuclear Polyhedrosis Viruses from East Java (Indonesia) to control Spodoptera litura on soybean BEDJO BEDJO
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180219

Abstract

Bedjo. 2017. The potential of various isolates of Spodoptera litura Nuclear Polyhedrosis Viruses from East Java (Indonesia) to control Spodoptera litura on soybean. Biodiversitas 18: 582-588. The study on potential of six isolates of SlNPV which are originally from East Java to control S. litura on soybean was conducted at the Entomology Laboratory, Plant Protection Department of Indonesian Legumes and Tuber Crops Research Institute during May to August 2015. The experiments were conducted to evaluate the potential of six isolates of SlNPV, namely: SINPV JTM 02-1, SINPV JTM 02-2, SINPV JTM 02-3, SINPV JTM 02-4. SINPV JTM 02-5 and SINPV JTM 97c (as control, a virulent strain uses five virus concentrations (1x10°, 1x106, 1x108, 1x1010, and 1x1012 PIBs/mL) to control the existence of S. litura instar-3. The data of the time for larvae to stop eating and their mortality were analyzed using MSTATC computer software and Hsinchi Probit program was used to analyze the 50% lethal concentration (LC50) and 50% lethal time (LT50). The study showed that the larvae’s will to stopeating, their mortality, LC50, and LT50 were significantly influenced by the interaction between SINPV isolate and the inoculated virus concentration. These potential parameters were also different among the larvae instar of tested S. litura. The potential of each isolates was higher at instar-3 than the other. Besides that, SINPV JTM 97c, SINPV JTM 02-5 showed the highest potential to control S. litura. It can be seen from instar-3, LC50 that is effective to kill 50% of the larvae population of SlNPV JTM 02-5 was between 1x1010 - 1x1012 PIBs/mL with LT50 between 170-207 Hours After Inoculation (HAI). It is revealed that SINPV JTM 02-5 has more potential as biopesticide to control S. litura than the other tested isolates.
Seasonal relative abundance of fish larvae in Helleh River estuary (north of the Persian Gulf, Iran) SEYED YOUSEF PAIGHAMBARI; MOJTABA POULADI; MEHRAN PARSA; NEDA MEHDIPOUR; NAJMEH HAGHIGHATJOU; AHMADREZA JABALEH; ALIAKBAR HEDAYATI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180214

Abstract

Paighambari SY, Pouladi M, Parsa M, Mehdipour N, Haghighatjou N, Jabaleh A, Hedayati A. 2017. Seasonal relative abundance of fish larvae in Helleh River estuary (north of the Persian Gulf, Iran). Biodiversitas 18: 541-547. Study of abundance and composition of fish larvae in order to examine their association with salinity, temperature, dissolved oxygen and transparency was conducted in Helleh River estuary in the north of the Persian Gulf. Samples were collected using Bongo net with 500 μm mesh size and 60 cm mouth diameter size in five selected stations from August 2011 to May 2012. Generally, 1637 fish larvae were isolated from 19 families that most of them were belong to Clupeidae. Seasonal relative abundance (SRA) of fish larvae varied and Clupeidae (39.90%) and Gobiidae (14.35%) in summer; Clupeidae (26.23%) and Sparidae (21.82%) in autumn; Clupeidae (34.43%) and Hemiramphidae (12.02%) in winter; Clupeidae (47.93%) and Sparidae (13.67%) in spring were most abundant than others. Overall, families namely Clupeidae (39.28%), Gobiidae (12.58%) and Sparidae (10.57%) had the highest and Carangidae (0.92%) had the lowest relative abundance during the sampling period. ANOVA test also showed a significant difference between summer and autumn with spring and winter (P<0.05). According to CCA, in stations 4 and 5 in summer; stations 5 in autumn; stations 4 and 5 in winter; and stations 4 and 5 in spring with the highest relative abundance of fish larvae, salinity and temperature and partially transparency and in stations 2, 3 and 4 in autumn, stations 2 and 3 in spring, dissolved oxygen had significant correlation with fish larvae abundance in this estuary.

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