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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Short Communication: A new distribution record of the mud-spiny lobster, Panulirus polyphagus (Herbst, 1793) (Crustacea, Achelata, Palinuridae) in Mayalibit Bay, West Papua, Indonesia RUDI A. WAHYUDIN; YUSLI WARDIATNO; MENNOFATRIA BOER; ACHMAD FARAJALLAH; AGUS A. HAKIM
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180248

Abstract

Wahyudin RA, Wardiatno Y, Boer M, Farajallah A, Hakim AA. 2017. Short Communication: A new distribution record of the mud-spiny lobster, Panulirus polyphagus (Herbst, 1793) (Crustacea, Achelata, Palinuridae) in Mayalibit Bay, West Papua, Indonesia. Biodiversitas 18: 780-783. Panulirus polyphagus (Herbst 1793) (Crustacea, Decapoda, Achelata, Palinuridae) from Waigeo Island is illustrated and described in detail of morphological characters. This species is reported as new distribution record from Mayalibit Bay, Raja Ampat District, Province West Papua, Indonesia. One specimen was collected by local fisherman from muddy substrate waters at a depth of 10-40 m. The collection was made in June 2016. The present study adds more distribution of species in the world and enhances the marine diversity of Indonesian crustacean lists. Some brief biological information on the species is presented.
Tengkawang cultivation model in community forest using agroforestry systems in West Kalimantan, Indonesia BUDI WINARNI; ABUBAKAR M. LAHJIE; B.D.A.S. SIMARANGKIR; SYAHRIR YUSUF; YOSEP RUSLIM
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180246

Abstract

Winarni B, Lahjie AM, Simarangkir B.D.A.S, Yusuf S, Ruslim Y.2017. Tengkawang cultivation model in community forest using agroforestry systems in West Kalimantan, Indonesia. Biodiversitas 18: 765-772. Tengkawang is the flora mascot of West Kalimantan and has long been supporting the life of people around the forest. Its fruit can be processed into fat which traded as ‘green butter', ‘borneo tallow', or ‘tengkawang oil', which used as cocoa butter substitutes and the material for manufacturing lipstick, candle and drugs. Its wood was used as raw material for sawmill and plywood industries. Today, tengkawang tree existence is endangered and has been replaced with rubber plantations. The purposes of this research were to: (i) analyze the maximum growth increment of tengkawang; (ii) analyze the maximum production of tengkawang fruits and latex; (iii) analyze the financial feasibility of tengkawang cultivation and tengkawang combined with rubber; and (iv)formulate tengkawang cultivation model. The research used a descriptive method in survey form and interview technique by using questionnaire. The research result showed that the maximum growth increment of tengkawang which cultivated in monoculture (model 1) and tengkawang combined with rubber (model 2) were achieved at the age of 40 years. The maximum production of tengkawang fruit in model 1 and model 2 were achieved at the age of 64 years, while the maximum production of latex (model 2) was achieved at the age of 17 years. The cultivation of tengkawang by model 1 produced IRR of 12.3% and model 2 produced IRR of 12.9%. Financially, both cultivation models of tengkawang were feasible to be cultivated. Financially, tengkawang cultivation by using rubber in an agroforestry system was more profitable than tengkawang cultivation in monoculture.
Short Communication: Altitudinal distribution of Papilionoidea (Lepidoptera) in Mount Aragats, Armenia NOUSHIG ZARIKIAN
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180255

Abstract

Zarikian N. 2017. Altitudinal distribution of Papilionoidea (Lepidoptera) in Mount Aragats, Armenia. Biodiversitas 18: 818- 825. In this study, the altitudinal distribution of butterflies on the highest mountain in Armenia was investigated. Butterflies were collected from March to October in 2015 and 2016. This revealed that the relationship between the total numbers of butterfly species and individuals and altitude shaped as bump. A significant relationship was also recorded between the altitude and the abundance and richness. However, the diversity and evenness index yielded a consistent decrease with increase in altitude because of the dominance of few species at high altitudes
Short Communication: Population structure of mangrove crab Scylla oceanica in mangrove ecosystem of Tanjung Lesung, Banten, Indonesia TITING PUDIAWATI; MUFTI P. PATRIA
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180254

Abstract

Pudiawati T, Patria MP. 2017. Short Communication: Population structure of mangrove crab Scylla oceanica in mangrove ecosystem of Tanjung Lesung, Banten, Indonesia. Biodiversitas 18: 813-817. The mangrove crab Scylla oceanica is one of the dominant crabs in the mangrove ecosystem at Tanjung Lesung Beach, Banten, Indonesia. The aim of the study was to determine the temporal distribution, carapace width-weight relationship and condition factors of S. oceanica. The crabs were collected by using traps for four months from August to November 2015. It was observed that the carapace was larger in male crabs (9.97 cm) than in female crabs (9.34 cm) and the average weight of the males (206.08 g) was higher than that of the females (183.83 g). b value of male (1.955) and female (2.123) crabs were significantly different (P < 0.05). Both of them have a negative allometric growth pattern. The result of the distribution analysis was a Morisita spread index Id of 1.5176; this indicates the crabs have clustered distribution patterns and their distribution was allegedly associated with the reproductive cycle.
Short Communication: Diversity and abundance of soil insects at Jeruk Manis Protected Forest in East Lombok (Indonesia) using several trapping methods IMMY SUCI ROHYANI; HILMAN AHYADI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180253

Abstract

Rohyani IS, Ahyadi H. 2017. Short Communication: Diversity and abundance of soil insects at Jeruk Manis Protected Forest in East Lombok (Indonesia) using several trapping methods. Biodiversitas 18: 809-812. Insects are the most successful organisms because it can live in almost all types of habitats, namely water (freshwater and sea), land, air, and even in both hot and cold climates. Identification of soil insects in a certain type of habitat requires practical, easy, inexpensive, and efficient collection methods so as to obtain high abundance and diversity of soil insects. This study aims to analyze the diversity and abundance of soil insects using several trapping methods in Jeruk Manis Protected Forest in East Lombok. There are five trapping methods applied in this study; (i) pitfall trap, (ii) pitfall traps with bait, (iii) yellow pan traps, (iv) soil sampling, and (v) forest floor collection. The findings show that the overall diversity of soil insects in Jeruk Manis Protected Forest is moderate (1.44), while its evenness level is low (0.48). Soil sampling method provides diversity value of 2.36 and evenness level of 0.89, which is also the highest one among the other methods. Pitfall traps with bait give high individual number of soil insects (10.577 individuals). The highest number of soil insect orders is obtained through forest floor collection with 11 orders, while the highest number of soil insect families is obtained through pitfall trap with 30 families. The taxa of soil insects with relatively highest abundance consecutively are Hymenoptera (Formicidae), Collembola (Isotomidae, Entomobryidae), Coleoptera (Hydrophilidae, Ptiliidae, Scarabeidae), and Diptera (Drosophilidae).
Dynamics expression of Osr40c1 gene and growth of maize (Zea mays) calluses in responding to salt stress TRIONO BAGUS SAPUTRO; NUR FADLILLATUS SHOLIHAH; DINI ERMAVITALINI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180252

Abstract

Saputro TB, Sholihah NF, Ermavitalini D. 2017. Dynamics expression of Osr40c1 gene and growth of maize (Zea mays) calluses in responding to salt stress. Biodiversitas 18: 801-808. Maize (Zea mays L) is one of the most planted cereal plants worldwide. The demand of maize plant is increased over the years since its various usage in industry. Unfortunately, the production rate does not meet the demands caused by the significant reduction of plantation area for housing and the others building. The marginal saline soil area can be a promising area to grow the maize although contains a high amount of salt. The high concentration of salt can significantly reduce the plant growth and productivity. The aims of this study were to determine the tolerant level of Manding and Bluto varieties against salt stress. There were two main stages on this research. First, callus induction through in vitro culture (MS0 + 2,4-D 3 mg/L), then the calluses were subcultured on the selection medium (MS0 + 2,4-D 3 mg/L + NaCl concentrations (0, 2500, 5000 and 7500 mg/L)). Second, Q-PCR analysis was used to observe the differences of gene expression level. The result shows that NaCl stress can alter the color of callus, from yellow to brown. The percentage of surviving callus was 100% in both varieties, although the callus weight decreased along with the increment of NaCl concentrations. In 7500 mg/L, Manding has 0.023 g in fresh weight, while Bluto 0,027 gr. Interestingly, the expression of Osr40c1 gene showed different level between those two varieties. Manding had only 0.82 fold, while Bluto had 4.86 folds compared with the control. Taken together, Bluto has a better performance in high content of NaCl.
Genotype of Brahman and Brahman Cross Cattle based on SNP in Insulin-Like Growth Factor Binding Protein-3 (IGFBP-3) gene sequences DWI AHMAD PRIYADI; PANJONO PANJONO; SIGIT BINTARA; TETY HARTATIK
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180251

Abstract

Priyadi DA, Panjono, Bintara S, Hartatik T. 2017. The genotype of Brahman and Brahman Cross Cattle based on SNP in Insulin-Like Growth Factor Binding Protein-3 (IGFBP-3) gene sequences. Biodiversitas 18: 795-800. The IGFBP-3 gene is a potential marker of cattle growth, which is related to the functions that influence the growth, energy metabolism, reproduction and immunity. The genome was isolated from whole blood samples of 10 Brahman cattle and 16 Brahman Cross cattle. Cattle IGFBP-3 gene that targeted in this study was located in the part of intron 2, exon 3 and part of intron 3. The gene targets were amplified using specific primers by Polymerase Chain Reaction (PCR) technique, resulting 563 bp amplification product. As data comparison to reveal the SNP, the GenBank sequences (n = 14) from various breed and countries were used. The objective of this study was to reveal the SNP on the Brahman and Brahman Cross IGFBP-3 gene. The results obtained 3 genotypes from one SNP that spread in the sample population. The SNP was located in intron 2 at position 3,930 (GA). The Polymorphism could be recognized by PvuII restriction enzymes. There was not enough evidence to associate the SNP with the phenotype (at pre-weaning age) of Brahman and Brahman Cross cattle. There was a genetic diversity in the population studied. Knowledgeable SNP could be used as genetic markers for further research on Brahman and Brahman Cross cattle.
Sequence variation among populations of sawfishes (Pristiformes: Pristidae) from Indonesia and Australia SUTARNO SUTARNO; A. BUDIHARJO; A.D. SETYAWAN; A.J. LYMBERY
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180259

Abstract

Sutarno, Budiharjo A, Setyawan AD, Lymbery AJ. 2017. Sequence variation among populations of sawfishes (Pristiformes: Pristidae) from Indonesia and Australia. Biodiversitas 18: 850-856. The sawfishes (Pristiformes: Pristidae) are very rare and critically endangered species globally, calling for conservation efforts around the world. This species is taxonomically interesting because molecular research in recent years has led to re-groupings in some species. The aim of this research was to sequence the control region (CR) of mitochondrial DNA of sawfishes from Indonesia and Australia, compare the sequences between samples, and construct phylogenetic trees to know the relationship of those samples. To achieve these aims, dried rostra of samples from both countries are collected, total DNA were purified and amplified using PCR, followed by sequencing reaction. The sequence data were then lined followed by constructing phylogenetic trees. The results of the BLASTN and phylogenetic tree analysis found two species, the all Australian samples belong to Pristis pristis (formerly P. microdon), one Indonesian sample also belongs to P. pristis, while the other Indonesian samples belong to Anoxypristis cuspidata.
Naga people's (Tasikmalaya District, West Java, Indonesia) local knowledge of the variations and traditional management farm of village chickens RUHYAT PARTASASMITA; JOHAN ISKANDAR; PUDJI MEILINDA RUKMANA
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180257

Abstract

Partasasmita R, Iskandar J, Rukmana. 2017. Naga people's (Tasikmalaya District West Java, Indonesia) local knowledge of the variations and traditional management farm of village chickens. Biodiversitas 18: 834-843. There is a strong maintain on the traditional Sundanese traditions among the village people West Java in the modern agricultural and the livestock farming. For example, they have not adopted modern of race chickens with high external inputs, including chicken breeders, chicken foods, vitamins, antibiotics, and various modern medicines. Ordinarily, the consequence of this in a situation the village people have traditionally farmed the various village chickens based on local knowledge and strongly embed by culture. Recently, however, the traditional farming of the village chickens in many villages of West Java, has dramatically affected by rapid development of the introduction of commercial the modern race-chickens farming. As a result, the diversity of village chickens has dramatically decreased. In addition, the production system of the village chicken farm has extremely depended on external inputs. This paper discusses on local knowledge of Naga people of Tasikmalaya, West Java on variations and cultural practice among the Naga people in the managing of the village chicken farm. The method used in this study was mixed of qualitative and quantitative with the ethnozoological and ethnobiological approach. The result of the study shows that Naga people of Tasikmalaya, West Java has well-recognized variations of the village chickens which is based on the folk classification at the level specific and varietal. Until recently, the Naga people have traditionally managed the village chickens in the sustainable system due to economically viable, ecologically appropriate, and adaptable to socio-cultural traditions.
The estimates spawning potential ratio of three dominant demersal fish species landed in Tegal, north coast of Central Java, Indonesia DUTO NUGROHO; MUFTI P. PATRIA; JATNA SUPRIATNA; LUKY ADRIANTO
Biodiversitas Journal of Biological Diversity Vol. 18 No. 2 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180258

Abstract

Nugroho D, Patria MP, Supriatna J, Adrianto L. 2017. The estimates spawning potential ratio of three dominant demersal fish species landed in Tegal, north coast of Central Java, Indonesia. Biodiversitas 18: 844-849. Java Sea is one of the important marine waters for fisheries purpose in Indonesia. The rich diversity of marine fish has been exploited for decades. Among them, demersal fish resource was commercially targeted by coastal fishers. The sustainability of demersal fishery is a crucial concern given the substantial economic contribution and its significant dependence of small-scale fishers for their livelihoods. The fishing intensity is considerable growing and tends to become threats their habitats. Three dominant species (Priacanthus tayenus, Scolopsis taeniopterus and Upeneus sulphureus) were selected in this study. To evaluate the vulnerability of these species to their bio-exploitation level, the spawning potential ratio (SPR) approach were applied. The calculation based on estimated length of first capture (Lc) indicates that SPR those demersal species occurred at less than 20%. These values indicate that existing fishery can be categorized as nearly fully exploited. Across broad range of species, 40% SPR is generally accepted as a proxy for Maximum Sustainable Yield (MSY) for recruitment overfishing in less resilience fish population.

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