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All Journal ILMU KELAUTAN: Indonesian Journal of Marine Sciences JURNAL ENGGANO Jurnal Sumberdaya Akuatik Indopasifik Cassowary
Aradea Bujana Kusuma, Aradea Bujana
Program Studi Ilmu Kelautan, Fakultas Pertanian Universitas Bengkulu
Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences Environmental Science Other

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Morphological Characteristics and Genetic Relationship of Red Snappers (Lutjanus timoriensis, Lutjanus malabaricus, Lutjanus erythropterus) in Papuan Waters Pranata, Bayu; Sala, Ridwan; Kusuma, Aradea Bujana; Purbani, Debora Christin; Mokodongan, Daniel Frikli; Sipriyadi, Sipriyadi; Azhar, Muhamad Ilham
ILMU KELAUTAN: Indonesian Journal of Marine Sciences Vol 29, No 2 (2024): Ilmu Kelautan
Publisher : Marine Science Department Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/ik.ijms.29.2.191-200

Abstract

Environmental and genetic variables can exert an influence on alterations in morphological traits. Within fish species inhabiting diverse aquatic settings, there can be observed variations in morphological traits. Genetically, variations in fish morphological characteristics can occur through mating and gene flow. To date, there has been a lack of research conducted on the variability in morphological traits and genetic relationships between Lutjanus timoriensis, L. malabaricus, and L. erythropterus. Thus, the current research aimed to identify variations in the morphological characteristics as well as in the intra- and inter-specific relationships between three red snapper species from the genus Lutjanus.  Cytochrome oxidase I (COI) gene was used to study the molecular relationship among species of red snapper. The results showed that L. timoriensis had high intraspecific morphological variation in young individuals. Morphologically, L. timoriensis, L. malabaricus, and L. erythropterus are very similar. Unlike L. malabaricus and L. erythropterus, young and adult L. timoriensis have black patches in the pectoral fin axils. The adult L. erythropterus has a comparatively small mouth, no hump on its head, and no black saddle at the base of its tail. Meanwhile, L. malabaricus has a comparatively large mouth, a head with a hump, and a black saddle at the base of its tail. In terms of body size, L. erythropterus is larger than L. timoriensis and L. malabaricus. Based on NCBI and Bold System data, molecular analyses determined that the observed fish were L. timoriensis, L. malabaricus, L. erythropterus with a similarity of between 99.85 and 100%. The phylogenetic tree construction demonstrated that L. malabaricus, L. timoriensis and L. erythropterus were closely related.
A Morfologi dan Genetik Ikan Sidat (Anguilla marmorata) di Sungai Prafi Kabupaten Manokwari Provinsi Papua Barat Bayu Pranata; Ida Lapadi; Fanny F.C. Simatauw; Andi Fajeriani Wyrasti; Mansyur, Fadhilah Iqra; Kusuma, Aradea Bujana
JURNAL ENGGANO Vol. 9 No. 1 (2024)
Publisher : Universitas Bengkulu

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.31186/jenggano.9.1.11-23

Abstract

Di perairan Indonesia ditemukan tujuh spesies ikan Sidat, yaitu A. marmorata, A. celebesensis, A. borneensis, A. bicolor bicolor, A. bicolor pacifica, A. interioris dan A. nebulosa. Ikan Sidat (Anguilla marmorata) adalah salah satu spesies yang memiliki nilai ekonomis tinggi dan telah menjadi komoditas tujuan eksport. Spesies ini banyak ditemukan di perairan Sungai di Indonesia termaksud di Sungai Prafi Kabupaten Manokwari, Papua Barat. Penelitian ini bertujuan untuk mengidentifikasi ikan Sidat dengan pendekatan morfologi dan genetik serta memahami hubungan genetic spesies A. marmorata. Metode BLAST di NCBI digunakan untuk mengidentifikasi sampel ikan Sidat. 31 Sampel penelitian teridentifikasi sebagai A. marmorata dengan nilai percent identity 100% dan query coverage 99%. A. marmorata yang ditangkap memiliki berat rata-rata sebesar 257.48 gr, panjang rata-rata yaitu 43.19 cm dan jumlah rata-rata ruas tulang ana dorsal sebanyak 18. A. marmorata yang berasal dari manokwari di rekonstruksi dengan dengan beberapa A. marmorata yang berasal dari berbagai negara. Hasil penelitian menunjukkan bahwa, A. marmorata dari manokwari berada pada satu klade yang sama dengan beberapa individu A. marmorata dari China, Brunei, Indonesia-Bali-Jawa Barat, Vietnam, Malaysia, Japang dan French Polynesia. Hal tersebut didukung oleh nilai jarak genetik antar populasi A. marmorata yang rendah yaitu 0%-0,4%. Rekonstruksi pohon filogenetik antar spesies Anguilla sp. menunjukkan bahwa A. marmorata berada pada clade yang sama dengan A. Nebulosa. Hal tersebut didukung oleh nilai jarak genetik yang rendah yaitu 3%. Sedangkan nilai jarak genetik tertinggi yaitu antar A. mossambica dan A. celebesensis (11,4%). Kata kunci : Anguilla marmorata, Genetik, Morfologi, Manokwari, Papua
Morphological and Genetic Characteristics of Red Snapper (Lutjanidae) in Nabire Waters Maharani, Andi Nacisa Malfin Savina; Sala, Ridwan; Toha, Abdul Hamid A; Purbani, Debora Christin; Mokodongan, Daniel Frikli; Kusuma, Aradea Bujana; Pranata, Bayu
ILMU KELAUTAN: Indonesian Journal of Marine Sciences Vol 30, No 1 (2025): Ilmu Kelautan
Publisher : Marine Science Department Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/ik.ijms.30.1.83-91

Abstract

The Lutjanidae family has a wide range of varieties, posing challenges in their morphological identification. Molecular identification is crucial for augmenting the current morphological data as a comprehensive database for documenting the presence of economically significant fish species in Nabire water. This article provides a comprehensive analysis of the morphological and genetic characteristics of red snapper species, as well as assessment of the evolutionary connections among snapper fish found in the water. This study aims to analyze the morphological and genetic characteristics of red snapper species and assess the evolutionary relationships among red snapper found in the sea waters. The DNA extraction procedure was conducted according to the instructions provided by the Geneaid gSYNC DNA extraction kit. The molecular marker used is the DNA barcode of the cytochrome oxidase subunit I (CO1) gene. A total of 29 individuals were identified, representing 8 species, namely Lutjanus timoriensis, Lutjanus gibbus, Lutjanus bohar, Lutjanus papuensis, Pinjalo lewisi, Etelis coruscans, Pristipomoides multidens, and Aphareus rutilans. The molecular analysis indicated that there was a fragment length of 620 base pairs (bp). P. multidens and L.  gibbus had the greatest genetic distance (0.22), whilst the species L. bohar and L. gibbus had the smallest genetic distance (0.11). The phylogenetic tree reconstruction yielded 8 monophyletic clades. Based on morphological and genetic analysis, eight species of the Lutjanidae family were identified in Nabire waters. Research is needed on biological parameters such as size when first caught, optimum length of capture and size when first gonad mature.
Detection and Identification of Potentially Harmful Microalgal Species in Doreri Bay, Manokwari, West Papua, Indonesia: A Preliminary Study Tururaja, Tresia Sonia; Bawole, Roni; Mogea, Rina A.; Murtihapsari, Murtihapsari; Manan, Jemmy; Kusuma, Aradea Bujana; Kolibongso, Duaitd
ILMU KELAUTAN: Indonesian Journal of Marine Sciences Vol 30, No 1 (2025): Ilmu Kelautan
Publisher : Marine Science Department Diponegoro University

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/ik.ijms.30.1.33-70

Abstract

Harmful algal blooms (HABs) frequently exhibit recurring patterns in specific locations and are often associated with significant environmental challenges, such as eutrophication. However, HABs have also been observed in areas with lower levels of eutrophication. This study aimed to detect and identify phytoplankton species responsible for blooms in the waters of Doreri Bay, with a particular focus on potentially harmful species (HABs). It represents the first attempt in this region to identify microalgal species. Field sampling was conducted during the southeast (dry) season of 2023 at nine stations across Doreri Bay. A total of 21 phytoplankton taxa, representing three classes were identified, with 14 taxa (66.7%) being potentially harmful. Phytoplankton cell densities ranged from 2.96 × 10⁴ cells L-1 to 1.22 × 10⁵ cells L-1, with an average density of 2.01 × 10⁴ cells L-1. The community was dominated by Diatoms, including Bacillaria spp., Coscinodiscus spp., and Rhizosolenia spp., and Cyanobacteria, mainly Trichodesmium spp. Two bloom patterns were observed: Cyanobacteria and Dinoflagellates dominated coastal areas, while Diatoms were more abundant in the outer bay. Correlation analysis revealed that temperature, salinity, and dissolved oxygen (DO) were the primary environmental factors driving phytoplankton variability and growth in the shallow coastal waters of Doreri Bay. These findings suggest that the phytoplankton community structure in this region remains stable when environmental gradients stay within the tolerance thresholds of sensitive species. Conversely, potentially harmful algal blooms are likely to develop when these environmental gradients exceed the tolerance levels of more resilient species.
Aspek Biologi Udang Jerbung (Penaeus merguiensis de Man 1888) di Perairan Kabupaten Teluk Bintun, Papua Barat Pranata, Bayu; Kusuma, Aradea Bujana; Sala, Ridwan; Sabariah, Vera; Lapadi, Ida; Saleh, Fitriyah Irnawati E.; Wyrasti, Andi Fajeriani; Kolibongso, Duaitd
Jurnal Sumberdaya Akuatik Indopasifik Vol 9 No 1 (2025): Februari
Publisher : Fakultas Perikanan dan Ilmu Kelautan, Universitas Papua

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.46252/jsai-fpik-unipa.2025.Vol.9.No.1.520

Abstract

The waters of Bintuni Bay have abundant natural resources, especially aquatic biota. One of the aquatic biota with high economic value is the Jerbung shrimp (Penaeus merguiensis). Currently, information about the biological aspects of shrimp in the waters of Bintuni Bay is still very lacking. Specifically, the aim of this research is to examine the size structure, first caught size (L50%), infinity size (L∞), growth patterns, condition factors and gonad maturity level (TKG) of Jerbung shrimp in the waters of Bintuni Bay. The research method used is the survey method. The research was carried out from March to April 2023. The results showed that the average carapace length and weight of male shrimp were 4.6 cm and 14.8 gr. Meanwhile, the average shell length and weight of female shrimp are 5.4 cm and 25.8 grams. The L50% value of male and female shrimp is 5.3 cm and 5.8 cm, the ½ L∞ value of male and female shrimp is 3.4 cm and 3.5 cm. If L50% > ½ L∞ means the size of the shrimp caught is quite large. The growth pattern of male and female shrimp is negative allometry (b = 0.1035 and b = 0.7424). The condition factor values for male and female shrimp are 0.31 and 1.73. The results of TKG observations showed that 75.2% of female shrimp were in TKG I and II, meaning that 50% of the shrimp caught had not yet reached TGK III and IV at the time of the research.
Aspek biologi kepiting bakau (Scylla sp.) di Perairan Teluk Bintuni, Papua Barat Pranata, Bayu; Kusuma, Aradea Bujana; Lapadi, Ida; Sala, Ridwan; Ayamiseba, Yunita; Wyrasti, Andi Fajeriani
Cassowary Vol 8 No 2 (2025): April
Publisher : Program Pascasarjana Universitas Papua

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.30862/casssowary.cs.v8.i2.300

Abstract

ABSTRACT: The waters of Bintuni Bay have potential mangrove crab (Scylla sp.) resources. Mud crabs are aquatic biota that have high economic value. Information about the biological aspects of mangrove crabs in the waters of Bintuni Bay is still very minimal. This research aims to examine the size structure, growth patterns, condition factors and gon-ad maturity level (TKG) of mud crabs in the waters of Bintuni Bay. The research was carried out from May to July 2023. The research results showed that the average carapace width and weight of male mud crabs were 13.6 cm and 553.2 grams. Meanwhile, the average size of the shell width and weight of female mud crabs is 12.5 cm and 284.1 grams. The average size of mangrove crabs caught is included in the catchable category (KKP Ministerial Regulation No. 16 of 2022). The growth pattern of male mud crabs is isometric (b = 3.15), while the growth pattern of female mud crabs is negative allometric (b = 2.12). The condition factor values for male and female mud crabs are 1.01 and 1.03. The results of TKG observations showed that 78.4% of female crabs were in TKG I and II, meaning that 50% of the shrimp caught had not yet reached TGK III and IV at the time of the research.
Co-Authors Abdul Hamid A. Toha Andi Fajeriani Wyrasti Ayamiseba, Yunita Azhar, Muhamad Ilham Bayu Pranata Bayu Pranata, Bayu Fanny F.C. Simatauw Ida Lapadi Kolibongso, Duaitd Maharani, Andi Nacisa Malfin Savina Manan, Jemmy Mansyur, Fadhilah Iqra Mokodongan, Daniel Frikli Murtihapsari . Purbani, Debora Christin Ridwan Sala Rina A. Mogea Roni Bawole Saleh, Fitriyah Irnawati E. Sipriyadi Tururaja, Tresia Sonia Vera Sabariah, Vera