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Indonesian Journal of Chemistry

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Published by Universitas Gadjah Mada

ISSN : 14119420 EISSN : 24601578 DOI : -

Core Subject : Science, Engineering,

Chemical Engineering, Chemistry & Bioengineering Chemistry

Indonesian Journal of Chemistry is an International, peer-reviewed, open access journal that publishes original research articles, review articles, as well as short communication in all areas of chemistry including applied chemistry. The journal is accredited by The Ministry of Research, Technology and Higher Education (RISTEKDIKTI) No : 21/E/KPT/2018 (in First Rank) and indexed in Scopus since 2012. Since 2018 (Volume 18), Indonesian Journal of Chemistry publish four issues (numbers) annually (February, May, August and November).

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Articles 25 Documents

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Search results for , issue "Vol 20, No 5 (2020)" : 25 Documents clear

Proteins Pre-concentration Using Glycidyl Methacrylate-co-stearyl Methacrylate-co-ethylene Glycol Dimethacrylate Monolith Ahmed Ali Alkarimi; Kevin Welham
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

Solid-phase extraction technique is considered as a vital tool in a pre-treatment of different samples. Therefore, it was used as a beneficial and alternative extraction method over the liquid–liquid extraction in diverse applications such as food, environmental, and biological analyses. Glycidyl methacrylate-co-stearyl methacrylate-co-ethylene glycol dimethacrylate (GMA-co-SMA-co-EDMA) monolithic sorbent was prepared as strong cationic-reversed phase sorbent for solid-phase extraction of different proteins. The monolithic sorbent was prepared inside two moulds such as glass microchip device and borosilicate. The morphological properties have been investigated using the Brunauer-Emmett-Teller (BET) model analyzer and scanning electron microscope (SEM), and the formation of the monolithic sorbent was examined using the FT-IR. Eight proteins (cytochrome C, insulin, myoglobin, lysozyme, β-lactoglobulin, trypsin, albumin chicken egg white, and apo-transferrin) with different molecular weight and isoelectric point were investigated for pre-concentration using the SCX/RP sorbent. It was found that the highest extraction recovery was obtained with three proteins cytochrome C, lysozyme, and myoglobin compared with the other proteins. These three proteins were chosen for pre-concentration using the glass microchip. Sorbent performance showed significant results in terms of stability and reproducibility.

Synthesis, Characterization and Docking Study of Novel Pyrimidine Derivatives as Anticancer Agents Manal Mohamed Talaat El-Saidi; Ahmed Ali El-Sayed; Erik Bjerregaard Pedersen; Mohamed Abdelhamid Tantawy; Nadia Ragab Mohamed; Wafaa Ahmed Gad
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

New compounds 5 and 9 using DNA bases e.g. Adenine 1 and Guanine 6 derivatives have been synthesized. The use of simple methods to synthesize compounds 5 and 9 were done using pyrimidine as an alternative DNA base ring. Another design to synthesize new simple pyrimidine rings utilizing thiourea and ethylcyano acetate to afford 6-amino-2-thiouracil was adopted. The reaction of thiouracil 10 with chloro cyano or chloro ester and ketone, resulted in the formation of adduct compounds 18-21, rather than the formation of compound 17. All the synthesized compounds were subjected to docking study, in order to gain insights into their binding modes against cyclin-dependent protein kinase 2 (CDK-2) that is involved heavily in cell cycle regulation and receptor protein B-cell lymphoma 2 (BCL-2) which is involved in cell apoptosis. These targets were selected based on their key roles in cancer progression via the regulation of the cell cycle and DNA replication. Molecular-docking analyses showed that compound 14e was the best docked ligand against both targets, as it displayed the lowest binding energy, critical hydrogen bonds and hydrophobic interactions with the targets.

Structural Change of Apoferritin as the Effect of pH Change: DLS and SANS Study Arum Patriati; Nadi Suparno; Grace Tjungirai Sulungbudi; Mujamilah Mujamilah; Edy Giri Rachman Putra
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

Apoferritin is a complex protein potential for drug delivery application. The advantage of apoferritin lies in its core-shell structure, its nano size, and its pH-sensitivity. This study was aimed to characterize the structure of apoferritin due to the pH alteration effect in a solution using dynamic light scattering (DLS) and small-angle neutron scattering (SANS). Both DLS and SANS can observe protein size in solution near its physiological condition. The results show that apoferritin possesses a core-shell structure with a diameter of around 12–13 nm at pH 7. The dissociation of apoferritin occurs at pH 1.9. The SANS data shows the apoferritin at pH 1.9 was dissociated into the smaller oligomer. The structure of this smaller oligomer has a different configuration than the configuration of apoferritin subunits at pH 7. It can cause the failure of reassembly of apoferritin if the apoferritin is neutralized back to pH 7 after dissociation from pH 1.9.

Employing an R Software Package rsm for Optimizing of Genistein, Daidzein, and Glycitein Separation and Its Application for Soy Milk Analysis by HPLC Method Florentinus Dika Octa Riswanto; Alni Desra; Rinjani Mustika Sari; Valentino Thomas; Abdul Rohman; Suwidjiyo Pramono; Sudibyo Martono
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

Soy milk, one of the soybean products, become more popular in recent years due to its benefit for human health. Biological activities of soybean products have been widely studied according to the presence of isoflavone aglycones content, including genistein, daidzein, and glycitein. Hence, it is important to develop an effective and efficient analytical method to provide guidance regarding appropriate isoflavone intake levels for soy milk. A reversed-phase high performance liquid chromatography (HPLC) method was developed and optimized in this study employed by R statistical software with the package of rsm. A C18 column was used for HPLC separation with the detection at 260 nm. Optimized condition for HPLC separation has been achieved with the mobile phase of methanol: water (63.26:36.74), a flow rate of 0.81 mL/min, and a column temperature of 45.31 °C. These conditions were applied in the HPLC system and successfully tested for the system suitability. Quantitative estimation was performed and resulted that the genistein, daidzein, and glycitein content in soy milk samples were 6.372, 6.273, and 2.853 µg/mL, respectively.

Antimicrobial and Anti-Oxidative Activities of 12-Arylbenzoacridines Boonsong Wungsintaweekul; Kayoko Abe; Rintaro Koga; Yoshinori Katakura; Kohei Torikai
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

Searching biologically active compounds has been one of the major duties of organic chemists. We previously constructed a library of synthetic 12-arylbenzoacridines and found estrogenic and anti-estrogenic agents. With taking the shot-gun approach into consideration, further exploration for bioactive species in the above library was carried out. As a result, new antibacterial agents against S. aureus (MIC = 16 μM), E. coli (MIC = 7.8 μM), E. faecalis (MIC = 0.98 μM), and A. baumannii (MIC = 31 μM) were found. Moreover, we also unveiled that some of the tested compounds exhibit cell-based anti-oxidative activity. These results clearly show a good potential of 12-arylbenzoacridines as novel pharmacophores, which is useful to establish various medicines.

Dispersibility of Multiwall Carbon Nanotube in a Polyanionic Surfactant Based on UV-Vis Analysis Yuyun Irmawati; Deni Shidqi Khaerudini; Indriyati Indriyati; Mardiyati Mardiyati; Rike Yudianti
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

The degree of carbon nanotube (CNT) dispersion in an ink solution plays a critical role in the performance of CNT based devices. This is a challenging task in the CNT utilization due to strong van der Waals interaction affecting the CNT bundles. A good dispersion degree can be achieved, for instance, by lowering the van der Waals interaction with the strategy of non-covalent interaction between polyanionic surfactant and the CNT surface. Herein, a simple and quick technique to disperse multiwall CNT (MWCNT) by using a polyanionic dispersant, carboxymethyl cellulose (CMC), is reported. The dispersion degree of MWCNT in aqueous solution during the sonication process was studied using UV-Vis analysis. Transmission electron microscope (TEM) was also applied to further investigate the interaction between CMC and MWCNT. The result shows that the maximum dispersion of MWCNT was achieved with a maximum absorbance in the UV-Vis spectra. Higher CMC concentration resulted in a higher viscosity of the solution, thus it increased the sonication duration in obtaining the maximum dispersion. By varying the MWCNT concentration at a constant CMC concentration of 0.25 wt.%, a homogenous MWCNT dispersion was obtained up to 0.2 wt.%. The encapsulation of a thin CMC layer on the MWCNT surface with a thickness of 1.5–3 nm was evidenced by TEM micrograph analysis.

Chemical Investigation and Antimicrobial Activity of Medicinal Plant Toddalia asiatica Lam Wilmar Maarisit; Misran Lawani
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

Medicinal plants have become important sources of natural products, which have been used in the development of therapeutic agents. Four new coumarins (1-4) have been isolated together with five known metabolites (5-9) from the medicinal plant T. asiatica. The structures of 1-9 were assigned based on their spectroscopic data. Compounds (1-9) inhibited the growth of the Gram-negative bacteria E. coli and Gram-positive bacteria S. aureus at a concentration of 25 and 50 μg/disc. Compounds (2-4) inhibited the phytopathogenic fungus C. cucurbitarum at 50 μg/disc.

Metals Accumulation in Muscle Tissues and Digestive Contents of Periglypta reticulata (Kerang Geton) from Lancang Island, Jakarta Suratno Suratno; Rachma Puspitasari; Zahriza Purnadayanti; Novita Sandra
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

The concentration of nineteen metals (Hg, As, Cd, Co, Cr, Cu, Fe, Li, Mg, Mn, Mo, Ni, Pb, Se, Sr, Ti, Tl, V, and Zn) were determined in muscle tissues and digestive contents of Periglypta reticulata (Kerang Geton), collected from Lancang Island part of Seribu Islands, Jakarta. An interaction between toxic and essential metal in a clam is also studied. The results showed high concentrations of As (4.56), V (1.20), and Zn (4.91) mg/kg wet weight in muscle tissues and As (7.16), Ti (2.53), and Zn (8.68) mg/kg wet weight in digestive contents. Average concentrations of metals in muscle tissues and digestive contents were below regulation limit from permissible standard National Agency of Drug and Food Control except for Arsenic (As). The average concentration of metals in muscle tissues was significantly (P < 0.05) lower than in digestive contents except As, Co, Cr, Mg, and Tl, respectively. Toxic metals (Pb, Hg, Cd, and As) showed a strong correlation with several essential metals so that these metals can be a threat to the main function of a particular metal. The present study showed digestive contents could accumulate in higher metals; therefore, we suggested removing it before consuming this clam.

Myristica fragrans Shells as Potential Low Cost Bio-Adsorbent for the Efficient Removal of Rose Bengal from Aqueous Solution: Characteristic and Kinetic Study Azal Shakir Waheeb; Hassan Abbas Habeeb Alshamsi; Mohammed Kassim Al-Hussainawy; Haider Radhi Saud
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

In the present study, the Myristica fragrans shells (MFS) was used as low-cost bio adsorbent for the removal of Rose Bengal (RB) dye from aqueous solutions. The characteristics of MFS powder were studied before and after adsorption using different techniques such as Fourier transform Infrared spectroscopy (FTIR), Thermal Gravimetric Analysis (TGA), BET and BJH surface area analysis, Atomic Force Microscopy (AFM) and Scanning Electron Microscopy (SEM). Batch adsorption was adopted to evaluate the effect of various parameters on the removal of RB such as; time of contact (5–75 min), initial dye concentration (10–50 mg L–1), adsorbent dose (0.1–1.7 g L–1) and pH (3–12). The results revealed that the coverage of MFS surface by RB molecules involved the formation of ester bond (esterification), and the pore diameter decreased from 190.55 to 2.43 nm when adsorption of RB onto MFS surface occurred. Experimental adsorption data were modelled using isotherm models including Langmuir, Freundlich, and Temkin. Temkin isotherm demonstrated to be the best isothermal model, and the results indicate that the adsorption of Rose Bengal on MFS surface follows pseudo second-order kinetics model. The adsorption of dye at different pH media showed that the esterification process was more preferred in acidic solution.

Study of the Mechanical Properties of Natural Rubber Composites with Synthetic Rubber Using Used Cooking Oil as a Softener Nasruddin Nasruddin; Tri Susanto
Indonesian Journal of Chemistry Vol 20, No 5 (2020)
Publisher : Universitas Gadjah Mada

This research aims to study the mechanical properties of natural rubber composites with nitrile butadiene rubber and ethylene propylene diene monomer rubber. Composite fillers consisted of kaolin, and softener using used cooking oil. The study was carried out by the method of mastication, vulcanization, and maturation of the compound into rubber vulcanizates. The vulcanization and mastication process is carried out in the open mill. The maturation of the compound into rubber vulcanizates from the results of mastication and vulcanization was carried out using semi-automatic heat press and press at a temperature of 130 °C ± 2 °C for 17 min. Based on data from testing the mechanical properties of five samples from five formulas, the mechanical properties of composite rubber are affected by the ratio of natural rubber, synthetic rubber, kaolin, and used cooking oil as a softener. The difference in the results of vulcanizates rubber testing of natural rubber composites with synthetic rubber is not only influenced by the ratio of the composite, but also by the degree of cross-linking between the material molecules.

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