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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 65 Documents
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Search results for , issue "vol. 21 no. 5 (2020)" : 65 Documents clear
Short Communication: First record of Hirschmanniella mucronata (Nematoda: Pratylenchidae) in Yogyakarta, Indonesia Siwi Indarti; Alan Soffan; MUHAMMAD MAULANA FARDANI ANDRASMARA
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210533

Abstract

Abstract. Indarti S, Soffan A, Andrasmara MMF. 2020. Short Communication: First record of Hirschmanniella mucronata (Nematoda: Pratylenchidae) in Yogyakarta, Indonesia. Biodiversitas 21: 2068-2073. Hirschmanniella spp. is one of the worldwide plant-parasitic nematodes affecting major losses in rice production and impact up to 25% yield losses especially on irrigated rice. Infection of Hirschmanniella spp. on the root system leading to the typical symptom of red color in the rice rooting system. In order to identify the species variation of Hirschmanniella spp. from the collected samples in Yogyakarta Province of Indonesia, a molecular-based identification using Polymerase Chain Reaction (PCR) method was conducted, complemented by morphological identification technique. PCR based identification was carried out by amplifying the area of ??28S rRNA using universal nematode primer (D2A / D3B) which resulting about 766 bp of amplicon. Blastx analysis from Genbank showed that Cangkringan sample confirmed to be H. mucronata species, while other samples from Banguntapan and Imogiri were H. oryzae species. The Cangkringan samples of H. mucronata have 97.5 % similarities with Belgium sample, forming separate clades with other samples. While both Banguntapan and Imogiri samples have the 99 % similarity with H. oryzae and were located in the same clade, but separated from Cangkringan sample. Morphological identification confirmed both species were distinctly based on the unique characters of the tail tips. H. mucronata therefor is the first report nematode species in Indonesian rice field. Precaution should be designed to prevent the potential distribution of H. mucronata to other areas.
Short Communication: Application of bacteriocin from Lactobacillus plantarum SRCM 1 004 34 strain isolated from okara as a natural preservative in beef sausage SALAM N. ARITONANG; ELLY ROZA; AFRIANI SANDRA
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210553

Abstract

Abstract. Aritonang SN, Roza E, Sandra A. 2020. Short Communication: Application of bacteriocin from Lactobacillus plantarum SRCM 1 004 34 strain isolated from okara as a natural preservative in beef sausage. Biodiversitas 21: 2240-2243. Lactic Acid Bacteria (LAB) can be found in food and most of the LAB have beneficial effects for humans as potential probiotics. LAB isolated from okara (soy milk pulp) produces antimicrobial compounds called bacteriocins which can be used as natural preservatives in sausages. This study aims to determine the effectiveness of this bacteriocin from LAB as a natural preservative in sausages. The bacteriocin was isolated from Lactobacillus plantarum SRCM 1 004 34 strain isolated from Okara. Completely Randomized Design (CRD) was used in 4 X 4 factorial pattern by three replicates The first factor was the percentage addition of bacteriocin (B): 0% (B0), 0.3% (B1), 0.6% (B2) and 0.9% v/b (B3). The second factor was the length of sausage storage time at 4°C (L): 0 days (L0), 4 days (L1), 8 days (L2) and 12 days (L3). The observed variables were moisture content, protein, fat, pH, total aerobic bacteria, and sausage fatty acid profile. The results showed that the content of protein, fat, and the bacterial count was significantly influenced by the interaction of the percentage addition of bacteriocin and storage time. pH was significantly affected by bacteriocin dose and storage time but was not affected by the interaction of other factors. The moisture content of the sausage was significantly affected by storage time. The results of this study showed that sausages treated with 0.9% bacteriocin (B3) with a maximum storage time of 12 in the refrigerator was still safe to be consumed.
Effects of supplementation with phosphorus, calcium and manganese during oil palm frond fermentation by Phanerochaete chrysosporium on ligninase enzyme activity Roni Pazla; Novirman Jamarun; Fauzia Agustin; Mardiati Zain; Arief Arief; Nesya Oktiacahyani
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210509

Abstract

Abstract. Pazla R, Jamarun N, Agustin F, Zain M, Cahyani NO. 2020. Effects of supplementation with phosphorus, calcium and manganese during oil palm frond fermentation by Phanerochaete chrysosporium on ligninase enzyme activity. Biodiversitas 21: 1833-1838. The objective of this study was to evaluate the effects of supplementation with phosphorus (P) in combination with calcium (Ca) and manganese (Mn) during oil palm frond (OPF) fermentation by Phanerochaete chrysosporium on ligninase enzyme activity and lignin degradation. This study was carried out using a randomized complete design with 3 treatments (addition of P, Ca and Mn) and 5 replicates. The following treatments were performed: T1 (P 1000 + Ca 2000 + Mn 150 ppm), T2 (P 1500 + Ca 2000 + Mn 150 ppm), and T3  (P 2000 + Ca 2000 +Mn 150 ppm). The data were subjected to an analysis of variance (ANOVA), and differences between treatment means were tested using Duncan's multiple range test (DMRT). The parameters measured were as follows: lignin peroxidase (LiP) activity (U/mL), manganese peroxidase (MnP) activity (U/mL), crude protein (CP) content (%), crude fiber (CF) content (%) and the decrease in lignin (%). The results revealed a significant increase in LiP activity and CP content and a decrease in the lignin content (p<0.05) by the addition of P in the T3 treatment. However, the treatment nonsignificantly increased (p>0.05) MnP activity and significantly decreased (P<0.05) the CF content. In conclusion, supplementation of the OPF fermentation process with P 2000, Ca 2000, and Mn 150 ppm resulted in the highest ligninase enzyme activity and in decreased lignin content.
Ethnobotany and conservation of indigenous edible fruit plants in South Aceh, Indonesia Adi Bejo Suwardi; ZIDNI ILMAN NAVIA; TISNA HARMAWAN; SYAMSUARDI; ERIZAL MUKHTAR
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210511

Abstract

Abstract. Suwardi AB, Navia ZI, Harmawan T, Syamsuardi, Mukhtar E. 2020. Ethnobotany and conservation of indigenous edible fruit plants in South Aceh, Indonesia. Biodiversitas 21: 1850-1860. The traditional knowledge system is immensely important in the context of plant resource conservation, utilization, and environmental management. The objectives of this study, therefore, were to document local knowledge on the diversity, utilization and sustainable management of indigenous fruit yielding species in the South Aceh region of Indonesia. This research was based on extensive field surveys, plant collection, and interviews with the local people, and a total of 56 indigenous edible fruit species belonging to 24 families were identified. Furthermore, the recognized varieties have numerous applications and serve multiple use categories. For example, they have been adopted as food (56 species), by medicine (16 species), construction materials (14 species), furniture (13 species) and firewood (12 species). These indigenous edible fruits are mostly used in the treatment of cough, stomach ache, diarrhea, fever, and digestive problems, and the following species are commonly traded in traditional markets Durio zibethinus, Garcinia mangostana, Mangifera indica, Mangifera foetida, Mangifera odorata, Baccaurea macrophylla, and Baccaurea lanceolata. The agricultural expansion activities in South Aceh region are assumed to present significant threats to the sustainability of indigenous edible fruit species. Conservation of indigenous fruit plants can be performed through the preservation of traditional knowledge and the promotion and domestication of indigenous fruit plant species.
Short Communication: Isolation and characterization of the endophytic bacteria, and their potential as maize diseases control endang mugiastuti; SUPRAYOGI; NUR PRIHATININGSIH; LOEKAS SOESANTO
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210506

Abstract

Abstract. Mugiastuti E, Suprayogi, Prihatiningsih N, Soesanto L. 2020. Short Communication: Isolation And Characterization Of The Endophytic Bacteria, And Their Potential As Maize Diseases Control. Biodiversitas 21: 1809-1815. Sheath blight and bacterial wilt are diseases that can reduce maize production. Biological control with the endophytic bacteria offers environmentally friendly control for these pathogens. The study aimed to isolate and characterize the endophytic bacteria morphologically and biochemically and to study their potential to control maize diseases, especially sheat blight and bacterial wilt causing pathogens. The study was conducted at the Plant Protection Laboratory, Faculty of Agriculture, Jenderal Soedirman University, from April to August 2019. The study consisted of four stages: isolation and characterization of endophytic bacteria, the antagonism test of the endophytic bacterial to R solani, the antagonism test of the endophytic bacteria to Pantoea sp., and the mechanical test of the endophytic bacteria as biological control agents and plant growth-promoting bacteria. Based on the research, four endophytic bacteria isolates have been successfully isolated, and characterized successfully and found have the potential to be developed as biopesticides to control maize disease, especially R. solani and Pantoea sp. Bacillus sp, endophytic from the root (BK.A1; BK.A3; PP.A5) and Bacillus sp. endophytic from the stem (PPD.B2) can suppress the growth of R.solani by more than 50%, have a strong antagonistic index against Pantoea sp (> 4), and can produce protease and lipase enzyme, and phosphate solubilization.
Short Communication: The type and sound diversity of Kukuak Balenggek chicken (Gallus gallus domesticus) reared in West Sumatra, Indonesia firda arlina; RUSFIDRA; DICKY ANDRIANO; CECE SUMATRI
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210518

Abstract

Abstract. Arlina F, Rusfidra, Andriano D, Sumatri C. 2020. Short Communication: The type and sound diversity of Kukuak Balenggek chicken (Gallus gallus domesticus) reared by the association of Kukuak Balenggek Chicken Lovers in West Sumatra. Biodiversitas 21: 1914-1919. Kukuak Balenggek is one of the rare indigenous chicken in Indonesia. The number of population and genetic quality of Kukuak Balenggek Chicken (KBC) in in-situ has been decreasing from year to year. This encourages Kukuak Balenggek chicken lovers to found an association, namely Kukuak Balenggek Chicken Lovers, in order to conserve the germplasm native to West Sumatra. This study aimed to identify the type dan the song diversity of Kukuak Balenggek Chicken. A total of 180 adult males of Kukuak Balenggek chicken used in this study came from 32 members of the Association of Kukuak Balenggek Chicken Lovers. The survey method used in this research was purposive sampling. The analysis of data was carried out by descriptive statistical analysis. The parameters observed were the type of sound, number of crowing, number of crowing syllables, and duration of crow. The analysis of Kukuak Balenggek sound used the Cool Record Edit Pro computer software. The result showed that the percentage of sound type of Rantak Gumarang, Sigegek Angin, Alang Babega, Riak Ilia Aia, Ginyang, Ginyang Mataci, Gayuang Luluah were 37.78%, 26.67 %, 7.78%, 13.33%, 3.33%, 5.56%, and 5,56%, respectively. The highest of average, the number of crowing and syllable crowing based on the type of KBC sound was Sigegek Angin sound with an average of 9.48 crowing and 12.48 crowing syllable. While the longest average of Kukuak Balenggek chicken crowing duration was the Gayuang Luluah sound type with an average of 3.33 seconds.
Ethnobotanical knowledge and conservation practices of indigenous people of Mbeliling Forest Area, Indonesia Marlinda Mulu; ZEPHISIUS R.E. NTELOK; PETRUS SII; HILDEGARDIS MULU
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210512

Abstract

Abstract. Mulu M, Ntelok ZRE, SII P, Mulu H. 2020. Ethnobotanical knowledge and conservation practices of indigenous people of Mbeliling Forest Area, Indonesia. Biodiversitas 21: 1861-1873. The indigenous people of Mbeliling Forest Area, Indonesia have long interacted with nature, in the form of utilizing forest resources for their survival. Therefore it is essential to identify the plants used to support their lives. In addition, they also have traditional institutions that manage the lives within groups. It is necessary to study the forms of environmental conservation applied by the indigenous people. This research is qualitative research with an ethnographic method and case studies. The research data is collected through observation and interviews. The data were analyzed descriptively and qualitatively. The results showed that total of 158 plant species belonging to126 genera and 64 families are used in the study area. They include 26 species used for food, 6 species for drinks, 60 species for medicine, 38 species for construction, 26 species for craft, 8 species for coloring, 6 species for cosmetics, 7 species for pesticides, and 16 species for traditional rituals. In terms of conservation, indigenous people work together with the village government. The forest area is divided into ulayat forests (communal forest) and protected forests. The management of communal forests is the right of indigenous people so that it functions as a production forest. Although communal forests are the right of indigenous people, which is managed by customary leaders, its utilization is affected by the status of protected forests established by the government. In protected forests, there are no plantations or agricultural activities.
Short Communication: Community of phytoplankton in peatland canal, Riau, and wet dune slacks of Parangtritis, Yogyakarta, Indonesia Annisa Mawarni; Firda Nabila Nur Azizah; Heni Wahyu Sartika; Suwarno Hadisusanto; Dwinda Mariska Putri; Akbar Reza
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210513

Abstract

Abstract. Mawarni A, Azizah FNN, Sartika HW, Hadisusanto S, Putri DM, Reza A. 2020. Short Communication: Community of Phytoplankton in peatland canal, Riau, and wet dune slacks of Parangtritis, Yogyakarta, Indonesia. Biodiversitas 21: 1874-1879. The ecosystems of peatland canal and wet dune slacks have specific characteristics for phytoplankton community. This study aimed to elaborate on the distribution and abundance of phytoplankton community in peatland canal of Sungai Tohor Village, Meranti Islands, Riau and wet dune slacks of Parangtritis, Special Region of Yogyakarta. Phytoplankton was collected using a 2-L modified Van Dorn water sampler. In peatland, canal phytoplankton was sampled at 3 different locations, each with 5 repetitions. Meanwhile, in wet dune slacks, phytoplankton was sampled at 5 locations, each with 3 repetitions. Phytoplankton samples were filtered with Wisconsin plankton-net 120 mesh and fixed with 3 drops of formaldehyde 4%. The measured physical and chemical factors were air temperature, water temperature, dissolved oxygen, alkalinity, carbon dioxide, pH, depth, transparency, nitrate, sulfate, and phosphate concentration. The results showed that the distribution and abundance of phytoplankton community in wet dune slacks were greater than those of the peatland community. This research found 18 species of phytoplankton in peatland canal, dominated by Synedra acus and 116 species of phytoplankton in wet dune slacks, dominated by Cyclotella meneghiniana. 
Isolation and identification of cellulolytic bacteria at fibric, hemic and sapric peat in Teluk Bakung Peatland, Kubu Raya District, Indonesia: - Siti Khotimah; Suharjono Suharjono; Tri Ardyati; Yulia Nuraini
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210538

Abstract

Abstract. Khotimah S, Suharjono, Ardyati T, Nurani Y. 2020. Isolation and identification of cellulolytic bacteria at fibric, hemic, and sapric peat in Teluk Bakung Peatland, Kubu Raya District, Indonesia. Biodiversitas 21: 2103-2112. Cellulose degrading bacteria was one of the microbial removers of organic matter contained in the soil into simpler monomers so that it can be utilized by other organisms. The objective of the research was to obtain cellulose-degrading bacteria found on fibric, hemic, and sapric peat in forest and shrubs (oil palm). The bacteria were isolated by pour plate method on 1% CMC media. Selected isolates were assayed quantitatively based on the activity of cellulase enzyme, identified with 16S rDNA. The density of cellulolytic bacteria in the secondary forest peat of fibric, hemic, sapric were 2.1x103 cfu/g, 5.9x104 cfu/g, and 4.9x104 cfu/g whereas, in the area of shrubs/oil palm peat fibric, hemic and sapric 6.9x104 cfu/g, 8.4x104 cfu/g and 3.4x105 cfu/g respectively. There were 19 bacterial isolates that have clear zones around the colony as degradation of cellulose had highest ability to degrade cellulose with clear zones of 5-7 mm. The strain of SB1.1.1 showed highest activity of cellulase enzyme 11.17 U/mL, followed by HH3.1.1 strain and SB2.3 7.83 U/mL. Based on the phylogeny tree, strain SB1.1.1 and HH3.1.1 have the closest kinship relationship with Bacillus cereus with a kinship relationship of 100%, while SB2.3 has the closest kinship relationship with Bacillus stratosphericus with a relationship of 99.85 %.
Abundance of ants (Hymenoptera: Formicidae) and the functional groups in two different habitats Ananto Triyogo; Budiadi; Siti Muslimah Widyastuti; Sena Adi Subrata; Suwito Susetyo Budi
Biodiversitas Journal of Biological Diversity Vol. 21 No. 5 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210535

Abstract

Abstract. Triyogo A, Budiadi, Widyastuti SM, Subrata SA, Budi SS. 2020. Abundance of ants (Hymenoptera: Formicidae) and the functional groups in two different habitats. Biodiversitas 21: 2079-2087. Land development often affects the quantity and diversity of ants (Hymenoptera: Formicidae). The aim of this study, therefore, was to determine and compare the ant species abundance and the functional groups between two different habitats, representing land development, including pioneer and agroforestry. This research involved a survey of the ants at the Forest Research Education (FRE) of Wanagama I Yogyakarta, and data were accumulated over a period of five months (April, May, June, July, and August). In addition, pit-fall trap and direct collection methods were used, involving the placement of 54 pit-fall traps at two habitats, and the ant specimens were retrieved after a two day period. The results show the total individual abundance of 2,310 and 2,067, on agroforestry and pioneer, respectively. Furthermore, the species richness and diversity index was higher in agroforestry (7; 2.01), compared with pioneer (6; 1.49), where the three dominant species include, Anoplolepis gracilipes, Solenopsis sp., Odontoponera denticulata; and Anoplolepis gracilipes, Odontoponera denticulata, Camponotus sp., respectively. Conversely, the highest amount of invasive ants (Solenopsis sp.) was observed in agroforestry, which negatively impacted on the presence of native species (Odontoponera denticulata). In addition, PCA analysis showed the development of three ant groups on each habitat, hence agroforestry made more real differences in the aspect of species abundance, and none in terms of richness. Therefore, notable differences were observed in the ant communities between both habitats, and agroforestry was indicated as a disturbed area, based on the increment in tramp and invasive ants, alongside low abundance of native and functional groups.

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