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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
 106   107   108   109   110 
Comparative study on the fish diversity from natural and bauxite post-mining in wetland system of Bintan Island, Indonesia TRI APRIADI; GINANJAR PRATAMA; RISANDI DWIRAMA PUTRA; JUMSURIZAL JUMSURIZAL; YALES VEVA JAYA; MUHAMMAD FIRDAUS; HERU DIWAN ARPAS; ANI SURYANTI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190327

Abstract

Apriadi T, Pratama G, Putra RD, Jumsurizal, Jaya YV, Firdaus M, Arpas HD, Suryanti A. 2018. Comparative study on the fish diversity from natural and bauxite post-mining in wetland system of Bintan Island, Indonesia. Biodiversitas 19: 967-973. In this study, the fish populations between two different wetland systems in Bintan Island, Indonesia, i.e., bauxite post-mining (Kijang) and natural wetland (Toapaya) were compared and to propose a newly index namely Environomic of Fishes Index (EFI) to their respective ecosystems. The purposive random sampling at six stations, each of three stations representing bauxite mining (Kijang) and three stations representing a natural wetland (Toapaya) were used in this research. The numbers of fish species and the abundance were enumerated. The new index derived from the value of diversity index (Shannon), similarity index (Evenness), dominance index (Simpson's), conservation status, and economic value were also evaluated. The natural wetland has higher fish diversity than bauxite post-mining. The total species found were twenty-four. The same seven species were found in both areas. Twelve species were obtained from bauxite post-mining, and nineteen species were obtained from natural wetland. Puntius tetrazona and Rasbora heteromorpha were the common species in area study. The diversity and dominance index was at low category, Evenness index was at high category in all stations, except in tidal swamp station at bauxite post-mining. The EFI in natural wetland was higher than bauxite post-mining. The three community index value, economic value, and conservation status of natural wetland were higher than bauxite post-mining.
Characterization of Sentani gudgeon, Oxyeleotris heterodon (Weber, 1907) at Sentani Lake, Papua, Indonesia based on truss morphometric ABINAWANTO ABINAWANTO; EKA DEWI SRIYANI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190333

Abstract

Abinawanto, Sriyani ED, Bowolaksono A. 2018. Characterization of Sentani gudgeon, Oxyeleotris heterodon (Weber, 1907) at Sentani Lake, Papua, Indonesia based on truss morphometric. Biodiversitas 19: 1013-1020. The study concerning the morphometry of Sentani gudgeon (Oxyeleotris heterodon, Weber 1907) was done from August 2016 until April 2017 in Sentani Lake, Jayapura District, Papua Province, Indonesia. The objectives of the study were to find out the diversity of the fish using truss morphometry approach. A total 56 individual sampled from three sampling sites were characterized for their 26 truss morphometric characters. The result showed that there were differences on morphometric characters of Sentani gudgeon. The highest correlation value found in character B2 and D5, which represented the dorsal portion and the tail fin of the fish body respectively. All variables showed significant different between each location (the p-value <c0.05). The canonical diagram resulted of 26 truss morphometric characters illustrated three separated clusters which discriminated the three populations based on sampling sites. A genetic distance analysis among Sentani gudgeon indicated that the fish originated from Putali Village was morphologically closed to the fish population from Sosiri. The truss morphometry technique can be used to identify the diversity of Sentani gudgeon in Sentani Lake.
Variation in seed morpho-physiological and biochemical traits of Java olive populations originated from Java, Bali, Lombok, and Timor Islands, Indonesia DEDE J. SUDRAJAT; ICHSAN SUWANDHI; ISKANDAR Z. SIREGAR; ULFAH J. SIREGAR
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190332

Abstract

Sudrajat DJ, Suwandhi I, Siregar IZ, Siregar UJ. 2018. Variation in seed morpho-physiological and biochemical traits of Java olive populations originated from Java, Bali, Lombok, and Timor Islands, Indonesia. Biodiversitas 19: 1004-1012. Java olive (Sterculia foetida L.) is one of the promising non-edible feedstocks for biodiesel production. Utilization of this tree species for plantation is limited due to knowledge gaps in many fundamental aspects of seed properties. The aim of the study was to determine the variation that may exist among java olive seed collected from Bogor, Palimanan, Tuban, Gilimanuk, Pemenang and Naioni populations, and to analyze correlations between one or many seed morpho-physiological and biochemical traits. Analysis of variance showed significant differences of seed morphological and biochemical traits, except for the germination capacity. Seed morphological traits were not significantly correlated with agro-climate factors, while some of biochemical traits revealed significant correlation with some agro-climate factors. Genotypic variance and genotypic coefficient of variation were higher for fruit length, fruit width, carbohydrate, fat, protein and oil contents, indicating higher genetic contribution on the variance of these traits. High heritability values combined with high genetic gain was found for protein content, fruit width and oil content, that revealed the characters having highly genetic origin with a good number of heritable components. Population clustering exhibited that most of the geographically distant population are genetically related. Pemenang population was found highly associated with oil content, indicating that the population have high potency to develop as the feedstocks for for biodiesel production.
The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool R. SUSANTI; RETNO SRI ISWARI; FIDIA FIBRIANA; INDRIAWATI INDRIAWATI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190331

Abstract

Susanti R, Iswari RS, Fibriana F, Indriawati. 2018. The duck cytochrome oxidase I (COI) gene: Sequence and patterns analysis for potential barcoding tool. Biodiversitas 19: 997-1003. The local duck DNA barcoding is still rarely conducted in Indonesia while DNA barcoding is extensively used as a tool of species identification and delineation tool. This study aimed to analyze the sequence and patterns of Central Javanese ducks mitochondrial cytochrome c oxidase subunit 1 (COI) gene. Feather samples of seven breeds of native duck were collected from traditional husbandries in Central Java. The samples were employed for DNA extraction and COI gene amplification. Five haplotypes were obtained from 35 samples, i.e., haplotype A, B, C, D, and E. Also, 9 variable sites with synonym substitution was detected in four nucleotides number 55, 61, 100, and 109; whereas five synonym substitutions were identified in the nucleotides number 36, 48, 51, 66, and 756. In conclusion, this study annotates that COI mtDNA gene is essential for local ducks barcoding system.
The best incubation time for primary productivity of phytoplankton in Laguna Lake, North Maluku, Indonesia YULIANA YULIANA; MUHAMMAD IRFAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190334

Abstract

Yuliana, Irfan M. 2018. The best incubation time for primary productivity of phytoplankton in Laguna Lake, North Maluku, Indonesia. Biodiversitas 19: 1021-1028. Primary productivity of phytoplankton is a source of energy and organic matter utilized by organisms at higher food chain levels. The measurement of the high rate of primary productivity can be done through the incubation of sample water at a particular time and time depending on sunlight intensity. This study aimed to estimate the best incubation time to achieve the highest primary productivity of phytoplankton in Laguna Lake, Ternate City, North Maluku Province, Indonesia in February 2017. The study was conducted at one location with four different levels of depth of 0, 5, 10, and 15 meters, and at three incubation times, i.e., 09:00-13:00, 10:00-14:00, and 11:00-15:00 (Eastern Indonesian Time). The chemical and physical parameters of radiance, temperature, pH, nitrate, and orthophosphate content were measured to estimate water quality of the lake. The results of this study showed that were 10 genera of phytoplankton belonging to Bacillariophyceae (6 genera), Chlorophyceae (4 genera), and Cyanophyceae (2 genera). The Laguna Lake has temperature ranged between 29.0-31.1oC, nitrate content of 0.22-0.58 mg l-1, orthophosphate content of 0.14-0.27 mg l-1, and pH 7. The primary productivity value at incubation time 09:00-13:00; 10:00-14:00; and 11:00-15:00 were of 101,851-258,278; 40,59-351,643; and 76,197-305,754 mgC m-3 hours-1, respectively. The best incubation time that provides the highest value in the measurement of primary productivity of phytoplankton at Laguna Lake was at 10:00 am to 14:00 pm.
Short Communication: Abundance of corn planthopper (Stenocranus pacificus Kirkaldy 1907, Hemiptera: Delphacidae) on five new corn varieties MY SYAHRAWATI; NOVRI NELLY; HASMIANDY HAMID; SISKA EFENDI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190335

Abstract

Syahrawati M, Nelly N, Hamid H, Efendi S. 2018. Short Communication: Abundance of corn planthopper (Stenocranus pacificus Kirkaldy 1907, Hemiptera: Delphacidae) on five new corn varieties. Biodiversitas 19: 1029-1034. Both local and hybrid corn varieties have been attacked by Stenocranus pacificus or corn planthopper frequently grown in West Sumatra. So, the basic aim of the study is to know about the abundance of S. pacificus on major five corn varieties that will be intermittently released viz., N35, N37, NT10, NT104, and NT105. The study was conducted around palm plantation in Dharmasraya District using Randomized Block Design in 5 replications. The observations were made at weekly intervals throughout the season after planting up to 8 weeks. Number of S. pacificus were collected from 16 hills by using simple aspirator, selected randomly from each unit. The measurement of leaf length, leaf width, stem diameter and trichome length were also performed to confirm the physical effect of S. pacificus preferences. LSD test at 5% level of significance was done to determine the influence of different varieties on insect population. The S. pacificus preferably effect to NT10 variety as compared to other varieties from the early growth of corn, but the S. pacificus abundance was higher at the generative phase than the vegetative. There was a very rapid increase in its population from week to week. Physical factors of the plant, as like as trichome, affected the insect abundance.
Bird diversity of tea plantations in Darjeeling Hills, Eastern Himalaya, India ABHISHEK CHETTRI; KISHOR SHARMA; SAILENDRA DEWAN; BHOJ KUMAR ACHARYA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190339

Abstract

Chettri A, Sharma K, Dewan S, Acharya BK. 2018. Bird diversity of tea plantations in Darjeeling Hills, Eastern Himalaya, India. Biodiversitas 19: 1066-1073. The biodiversity wealth and conservation potential of agro-ecosystems including cash crop plantations is gaining significance in recent years. Agro-forestry provides ecosystem services similar to forest and, hence, support a high diversity of flora and fauna. This study was undertaken to explore the bird community in different tea gardens of Kurseong Hill, Darjeeling, Eastern Himalaya, India. Darjeeling is globally known for its extent and magnificent tea production. We sampled birds using point count methods along transects during August 2015-January 2016. A total of 581 individual birds comprising 48 species were recorded during the study. Amongst the guild types, insectivorous birds were the most dominant both in terms of species and abundances. Depending on their habitat preferences most of the birds were forest generalists followed by forest specialists. This study highlights that tea plantations have a great potential in harbouring and conserving birds and other associated life forms. Thus, proper management of these landscapes would be an effective strategy to conserve biodiversity of the Himalayas.
Seagrass beds as the buffer zone for fish biodiversity in coastal water of Bontang City, East Kalimantan, Indonesia ADITYA IRAWAN; SUPRIHARYONO SUPRIHARYONO; JOHANNES HUTABARAT; AMBARIYANTO AMBARIYANTO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190337

Abstract

Irawan A, Supriharyono, Hutabarat J, Ambariyanto. 2018. Seagrass beds as the buffer zone for fish biodiversity in coastal water of Bontang City, East Kalimantan, Indonesia. Biodiversitas 19: 1044-1053. The purpose of this study was to demonstrate the importance of seagrass beds as a buffer zone for fish biodiversity in a coastal ecosystem. The sampling of seagrass and fish were done in seagrass beds associated with mangrove (ST1) and coral reef (ST2). Sampling period was executed from May 2011 to May 2017. Sampling was done on the lowest tide with a six-month interval. Seagrass sampling was carried out using line transect, and fish sampling was performed using set net (belat local name) operated by local fisherman. The results showed that seagrass beds at ST1 composed of C. rotundata and E. acoroides and that at ST2 composed of C. rotundata, E. acoroides, H. pinifolia, H. minor and T. hemprichii. The total number of individual was 42574 divided into 112 fish species. There were 17 species (population: 15.18%) associated explicitly with ST1 and 39 species (population: 34.82%) specifically associated with ST2 while 56 fish species (population: 50.0%) were prevalently spread in both stations. This research proved the existence of seagrass beds as a buffer zone for fish biodiversity.
Molecular identification of shark fins in Malaysian Borneo’s local markets BADRUL MUNIR MD-ZAIN; SITI NUR AZMINA ABID-KAMAL; NOR RAHMAN AIFAT; MUHAMMAD ABU BAKAR ABDUL-LATIFF; ABU MOHD- HASHIM; AHMAD AMPENG; SALMAH YAAKOP; ABDULLAH SAMAT
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190336

Abstract

Md-Zain BM, Abid-Kamal SNA, Aifat NR, Abdul-Latiff MAB, Mohd-Hashim A, Ampeng A, Yaakop S, Samat A. 2018. Molecular identification of shark fins in Malaysian Borneo’s local markets. Biodiversitas 19: 1035-1043. A molecular study was carried out to investigate the potential of the cytochrome c oxidase subunit I (COI) gene as a molecular marker for the genetic identification of shark fin samples that have gone through various preservation processes. A total number of 17 shark fin samples were collected from local markets in Sabah and Sarawak (Malaysian Borneo). The DNA sequences of the 17 samples were amplified by using polymerase chain reaction. The results from the analysis showed that, in the 17 sequences, there were 16 haplotypes present, with 244 sites from 688 bp of the sequences. For phylogeny analysis, tree topologies were reconstructed using the neighbor-joining (NJ) and maximum parsimony (MP) methods. DNA barcoding technique successfully identifies shark fins collected in local markets in Malaysian Borneo at species level employed during this study. Phylogenetic analysis showed that there were four clades that distinguish the four different orders present in the sample species. These clades had bootstrap values higher than 80. In addition, results indicated that 88.2% of the individuals are listed as endangered (Lamiopsis tephrodes, Sphyrna mokarran, and Sphyrna lewini), vulnerable (Alopias pelagicus and Rhynchobatus australiae), and near threatened (Carcharhinus limbatus, Chiloscyllium griseum, Carcharhinus sorrah, and Carcharhinus brevipinna), in the International Union for Conservation of Nature (IUCN) Red Data List.
Phylogenetic analysis of Dipterocarpaceae in Ketambe Research Station, Gunung Leuser National Park (Sumatra, Indonesia) based on rbcL and matK genes ESSY HARNELLY; ZAIRIN THOMY; NIR FATHIYA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190340

Abstract

Harnelly E, Thomy Z, Fathiya N. 2018. Phylogenetic analysis of Dipterocarpaceae in Ketambe Research Station, Gunung Leuser National Park (Sumatra, Indonesia) based on rbcL and matK genes. Biodiversitas 19: 1074-1080. Gunung Leuser National Park has several Research Stations. Ketambe is one of the Research Stations which is located in Aceh Tenggara district, Aceh province. One of the timber plants family which is abundant in Leuser Mountain is Dipterocarpaceae. However, the data of species and relationship of Dipterocarpaceae in Ketambe Research Station is lack and not available. The aim of the study is to analyze the phylogenetic of Dipterocarpaceae based on rbcL and matK gene in Ketambe Research Station. This research was carried out from July 2015 to August 2016 in Ketambe Research Station and Forestry and Forest Genetics Laboratory of Molecular, Bogor Agricultural University. The method used quadrat sampling technique with purposive sampling and experimental laboratory consisting of DNA extraction, PCR, electrophoresis, and sequencing. The data analysis was done using BioEdit and MEGA6. The results showed that based on morphological identification, there were five Dipterocarpaceae species found namely; Parashorea lucida, Shorea parvifolia, Shorea lepidota, Shorea johorensis, and Hopea dryobalanoides. The phylogenetic tree based on rbcL gene showed that there were two monophyletic groups, the first group was S. johorensis, S. lepidota, and H. dryobalanoides; and the second group consisted of S. parvifolia and P. lucida. The phylogenetic tree reconstruction based on matK gene showed that Shorea parvifolia and S. johorensis were separated in two different monophyletic groups.

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