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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Diversity and density of crabs in degraded mangrove area at Tanjung Panjang Nature Reserve in Gorontalo, Indonesia NURAIN LAPOLO; RAMLI UTINA; DEWI WAHYUNI K. BADERAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190351

Abstract

Lapolo N, Utina R, Baderan DWK. 2018. Diversity and density of crabs in degraded mangrove area at Tanjung Panjang Nature Reserve in Gorontalo, Indonesia. Biodiversitas 19: 1154-1159. This study was aimed to analyze the diversity and the density of crabs in a degraded mangrove area including in the intact mangrove area and the fishponds (the degraded mangrove area).. The data from this study could be used as supporting data for decision makers to slow down the degradation of mangrove along the area of Tanjung Panjang Natural Reserve. The observed data i.e diversity and density of crabs were collected using the stratified random sampling method (10 m x 10 m plot). Environmental parameters suited to crab habitat were also measured. The samples were taken from 18 spots. The study shows that 20 species of crabs were obtained within the mangrove area, and 11 species were founded within the fishponds area. Interestingly, two species of crabs i.e Varuna yui and Varuna litterata were only founded in fishponds area. The density of crabs in mangrove area ranged between 3.23 ind/300m2 and 4.52 ind/300m2, while the density of crabs in fishponds area ranged between 0.16 ind/300m2 and 0.63 ind/300m2. Further study revealed that characteristics and the age of mangrove trees affected macrozoobenthic biota (Gastropods, Bivalvia, Mud Lobster, Polychaeta, and shrimp) as well as fish diversity within mangrove in Tanjung Panjang Natural Reserve. These may be important for further restoration program of mangrove ecosystem and the sustainable restocking for conservation purposes.
Diversity of bivalves in Tanjung Balai Asahan Waters, North Sumatra, Indonesia IPANNA ENGGAR SUSETYA; DESRITA DESRITA; ERYANA DHALIA DRAJAD GINTING; MASRIAN FAUZAN; ERI YUSNI; SITI AISYAH SARIDU
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190350

Abstract

Susetya IE, Desrita, Ginting EDD, Fauzan M, Yusni E, Saridu SA. 2018. Diversity of bivalves in Tanjung Balai Asahan Waters, North Sumatra, Indonesia. Biodiversitas 19: 1147-1153. Local and regional market demands for bivalves increase outside Tanjung Balai City and Asahan District Waters, North Sumatra, Indonesia. As a result, high exploitation of bivalves occurred. In the other hand, there were less comprehensive information and studies on the diversity of bivalves in this area. This study aimed to determine the diversity of bivalves and water quality of Tanjung Balai Asahan Waters; was conducted between July 2016 and November 2017. Sampling of bivalves was conducted monthly. Several physical and chemical parameters were quantified. Data analysis included community structure analysis and Principal Component Analysis (PCA). The result showed that there were 16 species of bivalves from 7 families in Tanjung Balai Asahan Waters. Station 2 had the highest composition of bivalves, while the lowest was noted at Station 1. The mean abundance of bivalves at stations 1, 2 and 3 were 352±22 ind/m2, 222±14 ind/m2 and 388±30,2 ind/m2, respectively. In general, the index of diversity was categorized as low to moderate. The evenness index was categorized as low to high, while the dominance index indicated the absence of dominant species at almost all stations except station 1. Water quality of the waters was still in capacity to support the life of bivalves. Based on PCA analysis, it was obtained that the abundance of bivalves was positively correlated with nitrite, nitrate, phosphate, salinity, and pH.
Frequency and coexistence of the C677T and A1298C polymorphisms of the MTHFR gene in Aures region of Algeria DJAARA HAYAT; YAHIA MOULOUD; BOUSSIF ABDELALI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190353

Abstract

Hayat D, Mouloud Y, Abdelali B. 2018. Frequency and coexistence of the C677T and A1298C polymorphisms of the MTHFR gene in Aures region of Algeria. Biodiversitas 19: 1169-1175. The aim of this study was to assess the frequency of the two most common polymorphisms C677T and A 1298C of the methylenetetrahydrofolate reductase (MTHFR) gene, as well as the coexistence of both these genetic variants in healthy subjects from part of the Algerian population (Aures Region). A total of 94 apparently healthy subjects were enrolled in the study group. The frequency of the both investigated genotypes of the both MTHFR gene polymorphisms (C677T and A1298C) was determined by using the Real-Time Polymerase Chain Reaction-Fluorescence Resonance Energy Transfer (Real-Time PCR-FRET) technic. The frequencies of C and T alleles of C677T polymorphism were 127 (67.55%), 61 (32.45%), and for CC, CT, and TT genotypes were 44 (46.48%), 39 (41.8%) and 11 (11.70%) respectively. Regarding the frequencies at position 1298, for A and C alleles were 147 (78.19%), 41 (21.81%), and for AA, AC, and CC genotypes were 60 (63.82%), 27 (28.72%) and 7 (7.44%) respectively. Also, our results indicated that no significant differences in the percentage distributions of the C677T (P=0.518) and A1298C (P=0.514) polymorphisms between males and females carriers. As noted in the findings, the most frequent coexistence of genotypes were 677CT/1298AA (29.78%), 677CC/1298AA (22.34%) and 677CC/1298AC (17.02%%). The coexistence of 677TT/1298AA (11.70%), 677CT/1298 AC (11.70%) and 677CC/1298 CC (7.44%) genotypes was observed less frequently and for 677TT/1298AC, 677CT/1298CC, 677TT/1298CC genotypes, it has been no observed in the studied population. The frequency of MTHFR 677 C and T alleles were 0.66 and 0.31, whereas that of MTHFR1298 A and C alleles were 0.77 and 0.21, respectively. The allelic distributions of the C677T polymorphism remain intermediate in the Aures region (Northeast of Algeria); that support the idea of a north-south gradient. For the A1298C SNP, our funding appears to be lower compared across populations. In addition, the frequency and coexistence of genotypes of the C677T and A 1298C MTHFR gene polymorphisms in the region studied are similar to other ethnic group populations.
People’s views towards Gunung Palung National Park, West Kalimantan, Indonesia JAJAT SUDRAJAT; SITI SAWERAH; NIA PERMATASARI; ANITA SUHARYANI; AMELDALIA KARMONI; GUSTI Z. ANSHARI; DADANG WARDHANA; DICKO ROSSANDA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 3 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190349

Abstract

Sudrajat J, Sawerah S, Permatasari N, Suharyani A, Karmoni A, Anshari GZ, Wardhana D, Rossanda D. 2018. People’s views towards Gunung Palung National Park, West Kalimantan, Indonesia. Biodiversitas 19: 1138-1146. It is a common belief that the management of national park prevents local communities from accessing the park and using the park resources. Illegal logging and other unwanted encroachments to the park become a big problem, as national park authority has a limited capacity to monitor the whole park. This research aimed to study how local communities viewed Gunung Palung National Park, which is located in Ketapang and Kayong Utara District, West Kalimantan Province, Indonesia. A total of 91 respondents from seven villages were interviewed. In general, about 70% of respondents viewed the importance of economic benefits, resulting from limited access to traditional gardens in the use zone of the park and the supply of clean water. Approximately 67% of these respondents viewed the protection of natural resources in the park was not important. This view was possibly due to their little knowledge of the park management and the use of zoning system in the park. It was reported that park officers have some activities, but the collaboration and relationship between park officers and local communities need more time to mature. It seems that the poor and the youth tend to exploit more and put higher pressures on the park than the elderly groups.
Fauna of mantids and orthopterans (Insecta: Mantodea, Orthoptera) of the Mordovia State Nature Reserve, Russia ALEXANDER B. RUCHIN; ANDREY P. MIKHAILENKO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190403

Abstract

Ruchin A, Mikhailenko AP. 2018. Fauna of mantids and orthopterans (Insecta: Mantodea, Orthoptera) of the Mordovia State Nature Reserve, Russia. Biodiversitas 19: 1194-1206. The data on the distribution and habitat confinement of one Mantodea species and 44 Orthoptera species in the Mordovia State Nature Reserve are given. Of these, one species of Orthoptera (Calliptamus italicus) is recorded for the first time for the Mordovia State Nature Reserve, four species (Mantis religiosa, Phaneroptera falcata, Conocephalus fuscus, Tettigonia caudata) are recently penetrated, one species (Conocephalus fuscus) is reported in the Republic of Mordovia for the first time. In the fauna of mantids and orthopterans of the Mordovia Reserve, three ecological groups were identified: polytopic, not confined to certain biotopes (14 species), hygrophilous representatives of intrazonal habitats (5 species) and xerophiles. Among the latter, there are species of extrazonal habitats (13 species) and confined to dry pine forests (7 species). The steppe group was not represented. For the three key habitats with the largest number of identified species, brief botanical descriptions are given. Factors influencing the species composition and current state of fauna of mantises and orthopterans of the Mordovia Reserve are discussed, and measures are proposed for the conservation of vulnerable species.
Molecular phylogeny of trees species in Tripa Peat Swamp Forest, Aceh, Indonesia inferred by 5.8S nuclear gen ZAIRIN THOMY; ARDHANA YULISMA; ESSY HARNELLY; ARIDA SUSILOWATI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190402

Abstract

Authors. 2018. Molecular phylogeny of trees species in Tripa Peat Swamp Forest, Aceh, Indonesia inferred by 5.8S nuclear gen. Biodiversitas 19: 1186-1193. Tripa peat swamp forest is protected areas that have high biodiversity. Nevertheless, in some areas, the damage occurred due to conversions of land function to oil palm plantations. The impact of conversions of peat swamp forest to oil palm plantations has led to biodiversity decreased. Hence, it is important to identify the remain tree species in Tripa peat swamp forest. This study aimed to determinetrees species diversity in Tripa peat swamp forest by using of 5.8S rRNA nuclear gene. Research was conducted at Forest Genetics and Molecular Forestry Laboratory, Faculty of Forestry, IPB from September 2015 to August 2016. Molecular identification consisted of DNA extraction, PCR analysis, and sequencing. The data were analyzed using Bioedit, MEGA 6, BLAST, and ITS2 database. Molecular identification using ITS 1 and ITS 4 primer successfully amplified (the ITS region ITS1-5.8S-ITS2) of 16 trees species from 9 families. BLAST analysis results indicate the presence of 16 species has similar bases sequence with the GeneBank DNA database. The plant species are Branckenridgea palustris (Ochnaceae), Gonystylus sp. (Thymelaeaceae), Tristaniopsis whiteana (Myrtaceae), Syzygium sp.1 (Myrtaceae), Macaranga triloba (Euphorbiaceae), Syzygium garciniifolium (Myrtaceae), Knema intermedia (Myristicaceae), Palaquium ridleyi (Sapotaceae), Palaquium sp. (Sapotaceae), Dyera lowii (Apocynaceae), Elaeocarpus petiolatus (Elaeocarpaceae), Ficus sp. (Moraceae), Syzygium leptostemon (Myrtaceae), Chilocarpus suaveolens (Apocynaceae), Alstonia pneumatophora (Apocynaceae), and Alstonia sp. (Apocynaceae). Phylogeny tree reconstruction using the Neighbor-Joining Method (NJ) showed that 5.8S rRNA nuclear gene was successful as marker for 16 trees species from 9 different families. In addition, the 5.8S also successful for resolving phylogenetic relationships at genus level i.e. Alstonia, Palaquium, Syzygium, Tristaniopsis, Macaranga, Elaeocarpus, and Ficus.
The effects of contaminant microorganism towards Chelonia mydas eggs hatchery results in Pangumbahan Green Sea Turtles Conservation, Sukabumi, Indonesia TOUFAN GIFARI; DEWI ELFIDASARI; IRAWAN SUGORO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190404

Abstract

Gifari T, Elfidasari D, Sugoro I. 2018. The effects of contaminant microorganism towards Chelonia mydas eggs hatchery results in Pangumbahan Green Sea Turtles Conservation, Sukabumi, Indonesia. Biodiversitas 19: 1207-1212. Green sea turtles (Chelonia mydas) is an endangered species, in which its population is continuously decreasing caused by a number of factors. Microorganisms are suspected to have important role in declining eggs hatching success. The aim of this study was to investigate the role of microbial contaminant on the egg hatching success at the green sea turtles conservation area in Pangumbahan needs. The microbial contaminants detection was carried out on the eggs at the semi-natural hatching nest. RAL with three times repetitions was selected to figure out the correlation between microbial contaminants and hatching success was. The eggs were incubated at three different depths, i.e., 40, 60, and 80 cm. The results showed that the Gram-negative microorganisms were from the coliform bacteria such as E. coli, Salmonella and Shigella. Meanwhile, the fungi were dominated by mildew and yeast. The hatching success rate was 93.34% in 80 cm depth, 85% in 60 cm depth and 60% in 40 cm depth. HSD Tukey test shows the effects of various nesting depths towards the hatchery percentage (p?0.05) with the correlation test of microorganisms contaminant shows negative value meaning the level of contaminant microorganism is an inverse proportion to the hatchery results.
The impacts of oil palm plantation establishment on the habitat type, species diversity, and feeding guild of mammals and herpetofauna ROZZA TRI KWATRINA; YANTO SANTOSA; M. BISMARK; NYOTO SANTOSO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190405

Abstract

Kwatrina RT, Santosa Y, Bismark M, Santoso N. 2018. The impacts of oil palm plantation establishment on the habitat type, species diversity, and feeding guild of mammals and herpetofauna. Biodiversitas 19: 1213-1219. Indonesia is the world’s largest producer of palm oil. Contributing 2.14% to the country’s gross domestic product, palm oil plays an important role in the national economy from plantation sector. However, the expansion of oil palm plantations has brought negative impacts to forests and wildlife. Little is known to what extent these negative impacts on mammals and reptiles can be reduced through better management. To address this knowledge gap, the current study assessed species diversity as affected by the establishment of the oil palm plantation in Central Kalimantan, a tropical biodiversity hotspot in Asia. We conducted 25 line transect surveys and visual encounter surveys in oil palm areas, shrubs and secondary forests in these landscapes. The results indicated that the establishment of oil palm plantation negatively impacted species abundance and diversity, and changed the mammal and reptile species composition, by favoring ecologically generalist species. For forest specialist species, forested areas like HCV and HCS, play an important role in maintaining habitat heterogeneity in oil palm landscapes. Mammal species found in habitat conditions following oil palm plantations belong to some feeding groups, whereas all species of herpetofauna have terrestrial habitat types. These mammal and herpetofauna species can live and function in the food chain in the oil palm plantation ecosystem.
Short Communication: The diversity of epipelic diatoms as an indicator of shrimp pond environmental quality in Lampung Province, Indonesia SUPONO SUPONO; SITI HUDAIDAH
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190406

Abstract

Supono, Hudaidah S. 2018. Short Communication: The diversity of epipelic diatoms as an indicator of shrimp pond environmental quality in Lampung Province, Indonesia. Biodiversitas 19: 1220-1226. Epipelic diatoms live by attaching to sediment. Their existence is strongly affected by water and sediment quality. The purpose of this research was to analyze the structure of epipelic diatom populations on the bottom of shrimp ponds and to determine the correlation between epipelic diatom diversity and the quality of water and of pond bottom sediment. This exploratory research was conducted on twelve shrimp ponds during the water preparation period (pre-stocking). Data were collected to analyze the correlation between water and sediment qualities. The results showed that Nitzschia and Pleurosigma were the dominant epipelic diatoms in the shrimp ponds. Epipelic diatom diversity in shrimp ponds was affected by water quality parameters (namely total alkalinity, organic matter and nitrate) as well as sediment quality parameters (namely cation exchange capacity, clay content and organic matter content).
Seasonal yield and composition of an inland artisanal fishery in a humic floodplain ecosystem of Central Kalimantan, Indonesia SULMIN GUMIR; ARDIANOR ARDIANOR; SYAHRINUDIN SYAHRINUDIN; GUSTI Z. ANSHARI; YUKIO KOMAI; KAZUO TAKI; HARUKUNI TACHIBANA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190401

Abstract

Gumiri S, Ardianor, Syahrinudin, Anshari GZ, Komai Y, Taki K, Tachibana H. 2018. Seasonal yield and composition of an inland artisanal fishery in a humic floodplain ecosystem of Central Kalimantan, Indonesia. Biodiversitas 19: 1181-1185. Seasonal yield of an inland artisanal fishery was studied in 2015 in the Takapan Floodplain Lake located along the Rungan River of Central Kalimantan Province-Indonesia. Record on daily fish catch consisting weight data and species composition was made in situ along with a one-year rainfall data that was collected from the nearest Meteorological Station located in Palangka Raya City airport. Results showed that throughout the year, total annual yield of captured fishes reached 4.8 tons comprised of 34 commercial freshwater fish species. Seasonal yield varied considerably in which fish capture was higher during the rainy season than on the dry season. The transition period from rainy to dry season was found to be the peak period of fish capture in the floodplain. Of the 34 fish species, the most abundant species was Channa striata that accounted to almost 50% of total annual fish yield. The two most abundant fishes, Channa striata, and Kryptopterus palembangensis were a top predatory blackfish and an omnivorous surface water whitefish, respectively. This result indicated that the studied floodplain habitat was still in good condition, however, conservation is needed to maintain the sustainability of freshwater fish resource in the future.

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