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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
 114   115   116   117   118 
Short Communication: Macrofungal diversity in Mt. Makiling Forest Reserve, Laguna, Philippines: with floristic update on roadside samples in Makiling Botanic Gardens (MBG) ALMA E. NACUA; HAZEL YOY M. PACIS; JEFFREY R. MANALO; CARIZA JANE M. SORIANO; NIKKI ROSE N. TOSOC; ROBERT PADIROGAO; KEN JOSEPH E. CLEMENTE; CUSTER C. DEOCARIS
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190451

Abstract

Nacua AE,  Pacis HJM, Manalo JR, Soriano CJM, Tosoc NRN, Padirogao R, Clemente KJE, Deocaris CC. 2018. Macrofungal diversity in Mt. Makiling Forest Reserve, Laguna, Philippines: with floristic update on roadside samples in Makiling Botanic Gardens (MBG). Biodiversitas 19: 1579-1585. The Mt. Makiling Forest Reserve (MMFR) stands as a highly biodiverse habitat and the only intact natural forest near Metro Manila, the Philippines. It is one of the 18 key centers of plant biodiversity and 32 key ecotourism sites in the Philippines. In monitoring the implementation plans for protecting MMFR, the information pertaining to the mushroom biodiversity across decades is important. Therefore, we aim to study mushroom as an indicator for biodiversity since there has been studies in the past 30 years on the macrofungi of MMFR which we summarized here along with ours. Sampling was done in August 2017 based on the transect line of 1000 m along roadsides of Makiling Botanic Gardens (MBG). The distribution of the sampling units was carried-out using random and stratified sampling. Our study describes 21 macrofungal taxa collected from MMFR. Of these, 20 taxa belong to Basidiomycota and only one belongs to Ascomycota. Polyporaceae was found as the most dominant macrofungi family (24%). There were six (6) species that are medicinal, and no poisonous species noted. There are eleven (11) species in this study which are unique records compared with previous studies done in the macrofungi of MMFR. This is the first study done comparing mushroom across 30 years on a reserved area. Information on these macrofungal flora across time serves as a reference for the currently existing conservation efforts and implementation of biodiversity-related policies in MMFR.
Conservation and selection of plus trees of Pongamia pinnata in Bali, Indonesia NI LUH ARPIWI; I GUSTI AYU SUGI WAHYUNI; I KETUT MUKSIN; SUTOMO SUTOMO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190502

Abstract

Arpiwi  NL, Wahyuni IGAS, Muksin IK, Sutomo. 2018. Conservation and selection of plus trees of Pongamia pinnata in Bali, Indonesia. Biodiversitas 19: 1607-1614. Pongamia pinnata (L.) Pierre or commonly known as pongamia is a tropical legume tree produces oil seeds for biodiesel feedstock. The aims of present study were mapping growth sites of pongamia in Bali,  counting the number of trees and selecting plus trees based on growth parameters such as total height, clear bole height, diameter at breast height, canopy width, and oil content. Method of plus tree selection was comparison tree where one candidate tree was compared with 5 nearby check trees from each village. A total of 126 pongamia trees were found in coastal beach of Bali. The majority of trees were in the north west of the island.  Temperature ranges from 26-28oC, humidity ranges from 74-80% and altitude 5-50 meters above sea level. Eight pongamia plus trees were selected from 4 villages namely Kalibukbuk, Pengulon, Pemogan, and Sanur. In conclusion, pongamia was mostly distributed in the northern-west part of the Bali Island of Buleleng District. Lower number of trees was also found in the southern and western part of the island. Trees either scattered or grown in small groups. The number of pongamia tree in Bali is small and this needs further action for conserving the species.
Interspecies and intraspecies genetic diversity of Ongole Grade cattle and Madura cattle based on microsatellite DNA markers SUTARNO SUTARNO; NINA KURNIANINGRUM; ELISA HERAWATI; AHMAD DWI SETYAWAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190453

Abstract

Sutarno, Kurnianingrum N, Herawati E, Setyawan AD. 2018. Interspecies and intraspecies genetic diversity of Ongole Grade cattle and Madura cattle based on microsatellite DNA markers. Biodiversitas 19: 1593-1600. DNA microsatellite has been extensively employed for estimating the degree of kinship between genotypes and improving the quality of cattle products. Microsatellite markers are short-patterned DNA sequences and repeated tandem (sequentially) with 2-5 nucleotide units scattering the entire genome. The purpose of this study was to investigate the genetic characteristics of inter and intraspecies of Ongole Grade cattle and Madura cattle using microsatellite DNA markers. Blood samples from 20 individuals of each species were extracted by the method referring to Wizard Genomic DNA Purification Kit (Promega, USA) and PCR amplification was performed using 5 microsatellite loci, i.e., BM1824, ETH225, INRA005, MM12, and TGLA227. Results of the genetic characteristics of both species were calculated using the POPGENE program version 1.31. The data suggest that there is a genetic diversity of inter and intraspecies of Ongole Grade cattle and Madura cattle. The average value of Shannon's Information Index (I) at all microsatellite loci for Ongole Grade cattle was 0.76 and for Madura cattle was 1.12. Meanwhile, the average interspecies I value was 1.03. The mean intraspecies Polymorphic Information Content (PIC) of Ongole Grade and Madura cattle was 0.43, and 0.63, respectively, and the mean interspecies PIC value was 0.57. The data altogether suggest that all loci meet the standards as being informative markers in the assessment of genetic population because it has a PIC value> 0.5 especially for intraspecies of Madura cattle.
Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences BADRUL MUNIR MD-ZAIN; AQILAH ABDUL-AZIZ; NUR SYAFIKA MOHD-YUSUF; ROSLI NORSYAMIMI; JEFFRINE JAPNING ROVIE-RYAN; KAYAL VIZI KARUPPANNAN; NADIATUR AKMAR ZULKIFLI; SALMAH YAAKOP
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190501

Abstract

Md-Zain BM, Abdul-Aziz A, Aifat NR, Mohd-Yusof NS, Norsyamimi R, Rovie-Ryan JJ, Karuppannan KV, Zulkifli NA, Yaakop S. 2018. Sequence variation of captive Malayan Gaur (Bos gaurus hubbacki) based on mitochondrial D-loop region DNA sequences. Biodiversitas 19: 1601-1606. Malayan gaur (Bos gaurus hubbacki) can only be found in Peninsular Malaysia and southern Thailand. The International Union for Conservation of Nature (IUCN) has listed Malayan gaur in the Red List as vulnerable. The main objective of this study was to investigate sequence variation in the mitochondrial D-loop region of B. g. hubbacki from two captive centers. We collected 30 DNA samples of Malayan gaur from Jenderak Selatan Wildlife Conservation Center in Pahang and the Sungkai Wildlife Reserve in Perak. Polymerase chain reactions were performed to amplify all the samples. DNA sequences were analyzed using Neighbor-Joining (NJ) and Maximum Parsimony (MP) methods. Based on the 652 base pairs obtained, we found only seven variable characters with a value of 1% and a genetic distance between the two captive centers of 0.001. Haplotype analyses using DnaSP software detected only four haplotypes between these two captive centers. Both NJ and MP trees portrayed all Malayan gaur individuals in Jenderak Selatan and Sungkai captive centers as belonging to the same clade. Genetic variation of Malayan gaur in these centers is considered low due to individuals possibly sharing the same common parent. This sequence variation information is of paramount importance for the proper breeding and conservation management program of Malayan gaur in the future.
Short Communication: Novel Single Nucleotide Polymorphisms (SNPs) in the 5'UTR of Bovine Heat Shock Protein 70 (bHSP70) Gene and its association with Service per Conception (S/C) of Pasundan cattle SYAHRUDDIN SAID; WIDYA PINTAKA BAYU PUTRA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190504

Abstract

Said S, Putra WPB. 2018. Short Communication: Novel Single Nucleotide Polymorphisms (SNPs) in the 5'UTR of Bovine Heat Shock Protein 70 (bHSP70) Gene and its association with Service per Conception (S/C) of Pasundan cattle. Biodiversitas 19: 1622-1625. Heat stress in the livestock reduces reproductive traits, including of service per conception (S/C). The influence of heat stress in livestock can be handled through molecular selection. One of the candidate genes that is affecting heat stress tolerance is Bovine Heat Shock Protein 70 (bHSP70) gene. This research was carried out to detect the single nucleotide polymorphism (SNPs) in the 5'UTR of bHSP70 gene from 44 heads of Pasundan cows at breeding station (BPPIBT-SP Ciamis, West Java). Research showed that 18 SNPs were detected with sequencing method. The insertion mutation was detected in all animal studied and occurred at position between g.1112 and g.1113. The moderate of polymorphic informative content (PIC) were detected in two SNPs of g.1117G/A and g.1125A/C. Preliminary analysis showed that haplotype of two homozygote genotype combination from both SNPs had better of S/C value of than the others (P<0.01). Moreover, the average of S/C value in heterozygote genotype seems higher than homozygote genotype. However, the further research for clarification of this research results through large number of observation is important. It was concluded that two SNPs of g.1117G/A and g.1125A/C are potential as marker-assisted selection (MAS) for reproductive traits in Pasundan cows because of moderate PIC value.
Short Communication: The species diversity and composition of roadside trees in five cities in Sumatra, Indonesia WIRYONO WIRYONO; YANSEN YANSEN; ADITYA ADITYA; DAVID JUARA LAMHOT; JURIAH HUTAHAEAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190503

Abstract

Wiryono, Yansen, Aditya, Lamhot DJ, Hutahaean J. 2018. Short Communication: The species diversity and composition of roadside trees in five cities in Sumatra, Indonesia. Biodiversitas 19: 1615-1621. Roadside trees make living in a city more enjoyable due to their aesthetic values and ecosystem services. The ecological benefits of roadside trees may be enhanced by increasing the species diversity and the proportion of native species. The objective of this study was to know the species diversity and composition of roadside trees in the cities of Palembang, Bengkulu, Curup, Pematang Siantar and Argamakmur, in Sumatra Island, Indonesia, varying in size and altitude. Data of trees were collected from selected streets and analyzed to determine the species richness (S), Shannon-Wiener index of diversity (H?) and Ellenberg index of community similarity (ISE). The results showed that the species richness in a city ranged from 7 to 26, with the diversity index between 1.05 and 2.08. The large and medium cities had higher S and H?. More introduced species were found, both in number of species and number of individuals, than the native ones. The similarity among cities in species composition ranged from 47 to 82%. Overall, Swietenia macrophylla, an introduced species, was the most abundant species. The S and H? values of all cities were considered low and the composition of tree species did not support the conservation of native species. It is, therefore, essential to increase the species diversity of street trees, especially by planting native species.
Short Communication: Habitat characterization of Aristolochia baetica L. in Tessala Mount, Western Algeria HAKEMI ZAHRA; MEHDADI ZOHEIR; CHERIFI KOUIDER; AISSET AMEL
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190506

Abstract

Zahra H, Zoheir M, Ali L, Kouider C, Amel A. 2018. Short Communication: Habitat characterization of Aristolochia baetica L. in Tessala Mount, Western Algeria. Biodiversitas 19: 1632-1641. The aim of the current investigation was to study the characterization of the habitat of Aristolochia baetica L., an Ibero-Mauretanian species, present in Tessala Mount (West of Algeria). Twenty-four phytoecological surveys were realized on eight stations (St1-St8) in which the species is present. The floristic inventory allowed us to identify 68 species which are part of the floristic of A. Baetica, distributed in 31 botanical families; 6 biological and 19 biogeographical types. The assessment of edaphic and plant data using correspondence factor analysis (CFA) and hierarchical ascending classification (HAC) showed that A. baetica is a member of plant training of scrublands and grows especially in stations at low heights with a high rate of limestone.
Carbon storage variability in seagrass meadows of Marine Poton Bako, East Lombok, West Nusa Tenggara, Indonesia FIRMAN ALI RAHMAN; IBNUL QAYIM; YUSLI WARDIATNO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190505

Abstract

Rahman FA, Qayim I, Wardiatno Y. 2018. Carbon storage variability in seagrass meadows of Marine Poton Bako, East Lombok, West Nusa Tenggara, Indonesia. Biodiversitas 19: 1626-1631. The increase of atmospheric CO2 concentration in the last decades leads to global warming, having an adverse effect on the environment condition on the Earth. One of the natural mechanism as an effort to reduce the impact of global warming is carbon absorption and storage through photosynthesis mechanism of seagrass vegetation. Research conducted at Poton Bako, a district in East Lombok was aimed to reveal the composition of seagrass species, density, seagrass coverage, the biomass of seagrass tissue, content of carbon storage in seagrass tissue (above and below substrates), carbon content in seagrass sediments, and estimation of carbon stock in the area. The research included observation of species composition, and the sample was collected from 0.5 m × 0.5 m plot area. The total plot area was 36 on six lanes with the space between plots 25 m and between lanes 100 m. Six species from two families were found in the seagrass meadows, i.e., Cymodocea rotundata, Enhalus acoroides, Halophila minor, Holodule uninervis, Thalassia hemprichii and Thalassodendron ciliatum. The three highest total densities were C. rotundata 214.67±110.469 stands m-2, T. hemprichii 85.11±41.471 stands m-2, and H. minor 42.22±44.204 stands m-2. Species with the highest coverage value at all observation plots was C. rotundata (33.47±26.748 %), and T. ciliatum had the lowest value (2.12±5.071 %). The total biomass was 676.32 g DW m-2 with biomass above substrate 329.94±57.725 g DW m-2 and below substrate 654.88±81.199 g DW m-2. The carbon content of substrate ranged from 0.11% to 0.51% with the average of 0.35±0.081%, which was categorized low. The total average of carbon storage in seagrass was 447.92 g C m-2 comprising 142.77 g C m-2 of their tissue above substrate and 305.15 g C m-2 below substrate. Regarding the area, the total carbon stored in seagrass meadows with 56.65 ha area was 249.27 t C ha-1.
Diversity and abundance of termites along altitudinal gradient and slopes in Mount Slamet, Central Java, Indonesia HERY RATIKNYO; INTAN AHMAD; BAMBANG HERU BUDIYANTO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190508

Abstract

Pratiknyo H, Ahmad I, Bambang Heru Budianto BH. 2018. Diversity and abundance of termites along altitudinal gradient and slopes in Mount Slamet, Central Java, Indonesia. Biodiversitas 19: 1649-1658. A study on diversity and abundance of termites along an altitudinal gradient and the different slope was done in plantation forest of Mount Slamet. This research aimed to define the species composition along the altitudinal gradient and slope and to define the environmental factors affecting it. The sampling of termites was carried out following standardized belt transects (100 m x 2 m) laid vertically on the altitude of 700 up to 1300 m asl on four slopes. Each 100 m length of the belt transects was divided into 20 sections (5 m x 2 m), and termites were taken in each section from the trees, branches, barks and the ground. Data of termites composition were analyzed for diversity index (Shanon-Wiener, H') and domination index (Simson, D); the correlation among environmental factors with the family were analyzed by multivariate correlation, and then a Canonical Correspondence Analysis (CCA) was used to define the most associated environmental factor to the diversity and abundance of termites. A total of 7349 individuals belonging to 11 species in nine genera, five subfamilies, and two families were recorded. Four wood feeder species were Schedorinotermes javanicus, Macrotermes gilvus, Odontotermes javanicus and Microtermes insperatus, while humus feeder was Capritermes samarangi, Procapritermes stiger, Nasutitermes matangensis, N. matangensiformis, Bulbitermes spp., and the soil feeders were PeriCapritermes javanicus and P. dolichocephalus. Based on the Shanon-Wiener index, the Western Slope was the highest in diversity with five main environmental factors (altitudes, maximal rainfall, N content, manure application and light intensity) the most influencing while the CCA ordination showed that the canopy closure and light intensity were the most associated factor to the diversity and abundance of termites. In conclusion, the slopes caused the species richness differently with the most associated environmental factors was the canopy closure and light intensity.
Dracorhodin: A potential marker compound for detecting the presence of dragon’s blood resin from Daemonorops originated from Indonesia TOTOK KARTONO WALUYO; SANTIYO WIBOWO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190510

Abstract

Waluyo TK, Wibowo S. 2018. Dracorhodin: A potential marker compound for detecting the presence of dragon’s blood resin from Daemonorops originated from Indonesia. Biodiversitas 19: 1665-1671. Dragon's blood typifies as red-colored resin, which is presented by several plant genus, i.e., Dracaena, Daemonorops, Croton, and Pterocarpus. In Indonesia, dragon's blood is originated from Daemonorops which grows scattered in Sumatera and Kalimantan islands. Relevantly, this study was conducted to identify the specific compounds of dragon's blood originated from Indonesia's Daemonorops. Dragon's blood test samples were originated from 16 different towns in Indonesia, which are known as the center of dragon's blood-production. The samples were in powder and solid formation. The compounds of samples were analyzed using GC-MS instrument. Results revealed that dragon's blood in powder and solid formation were inherently similar. Dragon's blood powder was obtained from wet extraction, while dragon's blood solid from dry extraction. Results of chemical analysis on 16 dragon's blood samples disclosed that three compounds were frequently detected associated with dragon's blood presence. Dracorhodin compound was detected in 16 dragon's blood samples i.e 3,4-dihydro-5-methoxy-6-methyl-2-phenyl-2H-1-benzopyran-7-ol in 13 samples; and trendione in 9 samples. Accordingly, dracorhodin could serve as the most compound containing in dragon's blood originated from Indonesia's Daemonorops, which could be observed from 16 tested Daemonorops dragon's blood samples from several regions (towns) in Indonesia.

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