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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Genetic diversity of mastitis cow’s milk bacteria based on RAPD-PCR APON ZAENAL MUSTOPA; INES FERDIANA PUSPITASARI; FATIMAH FATIMAH; LITA TRIRATNA; GINA KARTINA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190517

Abstract

Mustopa AZ, Puspitasari IF, Fatimah, Triratna L, Kartina G. 2018. Genetic diversity of mastitis cow’s milk bacteria based on RAPD-PCR. Biodiversitas 19: 1714-1721. Mastitis in cow is caused by several pathogenic bacteria, including antibiotic-resistant bacteria. Identification of the pathogenic bacteria’s diversity that is contaminating cow’s milk needs to be done. The aim of this research was to conduct molecular identification in mastitis cow’s milk bacteria through RAPD-PCR (Random Amplified Polymorphism DNA-Polymerase Chain Reaction) analysis. Bacteria from mastitis cow’s milk were enumerated using selective media. Based on the result of media selection, there were 72 isolates of bacteria from mastitis cows in Ciguha, Guranteng, Cikarenceng Village (Pagerageung, Tasikmalaya), and Warnasari Village (Pangalengan, Bandung), West Java, Indonesia. The genomes from these isolates were extracted and then subjected to RAPD-PCR analysis. The results of RAPD-PCR analysis showed 8 clusters of dendrogram which 4 dominant clusters were selected. Identification of 4 dominant clusters, which contained representative strains, using 16s rRNA showed the isolates BPA-12, MHA-6, L-4, and XLDA-8 were identified as Staphylococcus aureus, Escherichia coli, Listeria monocytogenes, and Enterobacter bugandensis.
TRFLP analysis for revealing the diversity of rice phyllosphere bacteria SRI MARTINA WIRASWATI; ARIS TRI WAHYUDI; IMAN RUSMANA; ABDJAD ASIH NAWANGSIH
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190521

Abstract

Wiraswati SM, Wahyudi AT, Rusmana I, Nawangsih AA. 2018. TRFLP analysis for revealing the diversity of rice phyllosphere bacteria. Biodiversitas 19: 1743-1749. Phyllosphere environment of rice plant is usually inhabited by diverse bacteria which mostly contribute beneficial effects to the plant fitness. TRFLP method is a rapid and straightforward method to determine the bacterial diversity of many environments, including rice phyllosphere environment. This study aimed to analyze rice phyllosphere bacterial diversity of healthy rice plant cultivar Ciherang obtained from Sukabumi, Jasinga, and Situgede. The bacterial genomes were amplified and digested with two restriction enzymes, i.e., MspI and BstUI. The bacterial diversity (H’ index) and evenness (E index) were calculated from the peak value. From TRFs analysis, Betaproteobacteria and Pseudomonadales were dominantly found in nearly all samples with different relative abundance. In addition, Alphaproteobacteria and Gammaproteobacteria were also dominant in the several samples. The unique bacteria groups were inhabited in the sample from specific regions with certain growth phase. This finding informs us that the geographical factors might be more influent than the growth phase factor. Furthermore, the bacterial diversity and evenness of the metagenomic approach are higher than cultivation-dependent approach.
Protein and fatty acid profile of marine fishes from Java Sea, Indonesia SRI PRIATNI; DIAH RATNANINGRUM; WAWAN KOSASIH; EEN SRIENDAH; YOICE SRIKANDACE; TINA ROSMALINA; SRI PUDJIRAHARTI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190520

Abstract

Priatni S, Ratnaningrum D, Kosasih W, Sriendah E, Srikandace Y, Rosmalina T, Pudjiraharti S. 2018. Protein and fatty acid profile of marine fishes from Java Sea, Indonesia. Biodiversitas 19: 1737-1742. Indonesia is the second largest producer of capture fisheries products in the world and the most capture fisheries production comes from marine fisheries. Marine fish is a source of protein, amino acid, saturated and unsaturated fatty acids, which are important components of diet. The objective of the study was to investigate the protein and fatty acids profile of nine marine fish samples from Java Sea of Indramayu West Java, Indonesia. The analysis data showed that the total protein content of fish samples ranged from 61.07% (Pampus argenteus) to 86.56% (Tetraodontidae). Meanwhile, total lipid content of fish samples ranged from 1.73% (Tetraodontidae) to 9.82% (Leiognathus equulus). The concentration of ?-Amino Nitrogen (AN) of fish protein hydrolysate was ranging from 31 mM (Nemipterus hexodon) to 69 mM (Mystacoleucus padangensis) and% Degree of Hydrolysis (DH) was ranging from 9.33% to 20.39%. The molecular weight of protein fish samples had similar profiles primarily for almost all samples, which could be observed from a typical band with the weight around 49 kDa. The saturated fatty acid (? SFA) compositions of fish species ranged from 1094.03-4233.03 µg/g. Oleic acid (MUFA) content of all fish species ranged from 257.91-1216.06 µg/g. However, only three fish species contain of Poly Unsaturated Fatty Acid (PUFA) linoleic acid as the following; Selaroides leptolepis (171.36 µg/g), Oxyeleotris marmorata (249.40µg/g) and Tetraodontidae (140.35 µg/g). The highest SFA content was found in S. leptolepis with palmitic acid (C16:0) as the dominant saturated fatty acid (2320.88 µg/g). S. leptolepis also contained high oleic acid (1216.06 µg/g) and linoleic acid (171.36 µg/g).
Short Communication: Biological aspects of Charybdis anisodon (De Haan, 1850) in Lasongko Bay, Central Buton, Southeast Sulawesi, Indonesia ABDUL HAMID; YUSLI WARDIATNO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190523

Abstract

Hamid A, Wardiatno Y. 2018. Short Communication: Biological aspects of Charybdis anisodon (De Haan, 1850) in Lasongko Bay, Central Buton, Southeast Sulawesi, Indonesia. Biodiversitas 19: 1755-1762. Data on the biological aspects of Charybdis anisodon (De Haan, 1850) were still very limited. This study was aimed to determine the distribution of size, growth type, sex ratio and spawning season of C. anisodon in Lasongko Bay, Central Buton, Southeast Sulawesi. Crab collection was conducted from May 2013 to March 2014 using a crab gillnet. The carapace width of males and females C. anisodon ranged between 3.05-7.61 cm and 3.45-7.98 cm, respectively. Mann-Whitney test showed that width and length of carapace of males and females were significantly different (p<0.05). Type of growth of carapace width-body weight male and female were both allometric negative. Carapace length-body weight relationships of the males was isometric, but it was allometric negative for females. Spatially and temporally, the sex ratio of C. anisodon showed a variation, and the total sex ratio was 1: 0.38. The spawning season of C. anisodon tend to occur throughout the year.
Effect of the CDC light trap on control of nocturnal mosquitoes in coastal Samut Songkhram Province, Thailand TANAWAT CHAIPHONGPACHARA; SEDTHAPONG LAOJUN; CHAEKKI KUNPHICHAYADECHA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190522

Abstract

Chaiphongpachara T, Laojun S, Kunphichayadecha C. 2018. Effect of the CDC light trap on control of nocturnal mosquitoes in coastal Samut Songkhram Province, Thailand. Biodiversitas 19: 1750-1754. This study aimed to investigate the effect of CDC light trap on mosquito control and to study the relationship between this effect and weather factors in coastal areas (2 and 4 km from the sea) of Samut Songkhram Province, Thailand. We conducted a field test by trapping for 30 consecutive days from September to October 2017. The trap was hung at a height of 1.5 m and was 50 m away from a house. A total of 2963 adult female mosquitoes of 4 species belonging to 2 genera were trapped, including Anopheles epiroticus Linton & Harbach, Culex quinquefasciatus Say, Cx. sitiens Wiedmann and Cx. gelidus Theobald. The trapping rate of the CDC light trap set up 2 km from the sea was 85.70±73.81 adult mosquitoes per night. Meanwhile, at the location 4 km from the sea, the trap collected 13.07±11.40 adult mosquitoes per night. Comparing the numbers of mosquitoes captured by the CDC light trap between these two sites, there was a significant difference at p < 0.05. This study shows that the CDC light trap can be used for effective control of mosquitoes in coastal areas of Samut Songkhram Province, Thailand, especially Cx. sitiens, a filariasis vector.
Short Communication: Categorization models as a powerful tool in paleontological data analyses – the Phanerozoic bivalves AHMED AWAD ABDELHADY; MOHAMMED MASOUD ABDALLA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190525

Abstract

Abdelhady AA, Abdalla MM. 2018. Short Communication: Categorization models as a powerful tool in paleontological data analyses – the Phanerozoic bivalves. Biodiversitas 19: 1769-1776. Predicting biotic responses to current and future global change can be acquired through understanding how biological and environmental traits shaped the past origination, dispersion and extinction patterns. A global dataset encompasses 161,357 taxon occurrences belonging to 2,378 bivalve genera from past and recent environments were analyzed based on the categorization model, a widely-used machine-learning analysis, using MS-SQL and Excel PowerView. The occurrence data was standardized using square-root transformation to downplay the effect of sampling effort. Thus, the examined traits are resulting from reliable ecological interactions. The results indicate that the biotic traits of the bivalve can be determined by the abiotic ones. Moreover, ecological traits such as life habit (i.e., infaunal vs. epifaunal), diet (suspension vs. deposit feeders, herbivores vs. carnivores), composition (aragonite vs. calcite), and locomotion (stationary vs. mobile) all exhibit significant relation to a specific environment. The results demonstrated that decision tree and association rules are primary powerful tools in analyzing huge biological data and in testing many useful bio-ecological hypotheses.
Management of coastal biodiversity based on social-cultural values in constructing conservation character education ABUBAKAR SIDIK KATILI; RAMLI UTINA; YOWAN TAMU; ELYA NUSANTARI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190524

Abstract

Katili AS, Utina R, Tamu Y, Nusantari E. 2018. Management of coastal biodiversity based on social-cultural values in constructing conservation character education. Biodiversitas 19: 1763-1768. Coastal biodiversity is quite high including coral reef, mangrove, seagrass, and fishery resources. Management of coastal biodiversity can be conducted interdisciplinary covering various aspects. Four main aspects can be integrated, i.e., physical-biodiversity, social-cultural, character education, and conservation. This present study aimed to describe: coastal biodiversity in Gorontalo Province, Indonesia community’s social-cultural value and local wisdom embodying conservation character of the coastal ecosystem, and character education of coastal ecosystem biodiversity in primary school by learning with a prototype of conservation character-based materials. Specifically, the present study aimed to construct the conservation character education based on social-cultural values. Data were analyzed with descriptive qualitative method by comparing and referring to findings from the previous studies. The procedure used in this research was four-D, i.e., (i) Define stage; by doing the identification and exploration of the coastal biodiversity potential. The methods used in this stage was exploration survey method. Focused group discussions were conducted with coastal communities to identify social-cultural values and local wisdom and to analyze the core and basic competence of learners by examining the tools of the lesson and determining the competence. (ii) Design stage; by designing a prototype of learning material to construct the conservation character for learners. (iii) Development stage; by validating the prototype of learning material for constructing the conservation character for the learner. (iv) Dissemination stage, by doing seminars and information dissemination on a prototype of learning material to construct the conservation character. The results showed that in Gorontalo, there were three components of the coastal ecosystem which included mangrove, seagrass, and coral reef. The communities in the coastal area of Gorontalo were prominent in their strengthened social-cultural roots taking the form of ecological awareness. The community in coastal area possessed local knowledge of the natural resources, e.g., plants and animals, and local attribution of such resources in the local language. The conservation character-education based on social-cultural values, specifically local wisdom, is the most appropriate education model to encourage the pattern of biodiversity coastal ecosystem management. Conservation character education was highly relevant to life-enhancing skills, based on the empowerment of skills and coastal biodiversity potential in each region.
Short Communication: Genetic diversity of Salacca edulis from West Seram District, Maluku, Indonesia based on morphological characters and RAPD profiles SOVIAN SESCA ELLY; THEOPILUS W. WATUGULY; DOMINGGUS RUMAHLATU
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190526

Abstract

Elly SS, Watuguly TW, Rumahlatu D. 2018. Short Communication: Genetic diversity of Salacca edulis from West Seram District, Maluku, Indonesia based on morphological characters and RAPD profiles. Biodiversitas 19: 1777-1782. Morphological and RAPD-based genetic diversity analyses of Salacca edulis Reinw populations from West Seram District were performed. A survey was conducted in four locations in the village of Riring, Rumahsoal, Taniwel, Neniari, and Soya. Forty-two morphological characters and three RAPD primer were used. Data were analyzed on the NTSys program version 2.0 to perform UPGMA clustering analysis. An UPGMA dendrogram based on morphological characters resulted in two main groups with similarity value varied from 0.46-0.75 for morphology and 0.35-0.89 for RAPD. The result gives us important about cultivar of Salacca edulis in West Seram District Maluku which has high genetic diversity and germplasm. These results and can be used for further research for conservation as native cultivar.
Diversity of ambrosia beetles (Coleoptera: Scolytidae) on teak forest in Malang District, East Java, Indonesia YOGO SETIAWAN; RINA RACHMAWATI; HAGUS TARNO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190528

Abstract

Setiawan Y, Rachmawati R, Tarno H. 2018. Diversity of ambrosia beetles (Coleoptera: Scolytidae) on teak forest in Malang District, East Java, Indonesia. Biodiversitas 19: 1791-1797. Ambrosia beetle plays an important role in the temperate forest. Ambrosia beetle lives symbiotically with microorganism such as fungi, bacterium, and yeast that can cause plant wilt and death. In Java, ambrosia beetle has been reported to attack teak plantations in some regions. This research aimed to investigate the diversity of ambrosia beetles in the teak plant on monoculture and polyculture system in Malang District. This research was conducted in the teak forest in Dampit and Sumbermanjing Wetan, Malang District from March to May 2017. Ambrosia beetles were trapped by using baited bottle trap with 95% ethanol. The diversity of ambrosia beetles trapped was analyzed using Vegan package in R program to calculate the Shannon-Wiener diversity index (H), Species Evenness index (E), and Simpson's dominance index (D). The results showed that ambrosia beetles trapped in monoculture and polyculture teak plants system consist of nine species, i.e., Xylosandrus crassiusculus, X. morigerus, X. compactus, Xyleborus perforans, Euwallacea simillis, Xyleborinus andrewesi, Premnobius cavipennis, Coccotrypes distinctus, and Hypothenemus hampei. The Shannon Wiener index of Ambrosia beetles in polyculture (H=1.40) was higher than in monoculture (H=1.30), and both locations were categorized in the medium diversity category. The Species Evenness index of ambrosia beetles in polyculture (E=0.67) and monoculture (E=0.66) were also categorized in medium category. The Simpson’s dominance index in both locations was categorized in the middle dominance species. X. crassiusculus was the dominant species in polyculture and monoculture teak plant system.
Short Communication: The impact of Gamma radiation on Tdc and Str gene expressions in Catharanthus roseus regenerated plantlets ZAHRA NOORMOHAMMADI; MARYAM TABAN; FARAH FARAHANI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 5 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190530

Abstract

Noormohammadi Z, Taban M, Farahani F. 2018. Short Communication: The impact of Gamma radiation on Tdc and Str gene expressions in Catharanthus roseus regenerated plantlets. Biodiversitas 19: 1805-1810. Catharanthus roseus L.G. Don, is the essential medicinal plant with considerable attention. This plant is a rich source of terpenoid indole alkaloids (TIAs). The main alkaloids in C. roseus are vinblastine, vincristine, and ajmalicine. The tryptophan decarboxylase (Tdc) and Strictosidine synthase (Str) are key enzymes in TIA biosynthesis. In the present study, Tdc and Str gene expressions, as well as vinblastine production were evaluated in tissue culture regenerated plantlets in 4 groups; control, 60 Gy irradiation, 50 mg/L putrescine and 60 Gy irradiation + 50mg/L putrescine treatments. The results revealed significant increase in Tdc and Str gene expressions in 60 Gy irradiation + 50mg/L putrescine treated plantlets in comparison with control samples by using qPCR methods. HPLC analysis showed a higher amount of vinblastine in 60 Gy + 59 mg/L putrescine treated plantlets. Gamma radiation and putrescine as elicitor and polyamine, respectively, are able to improve vinblastine production in C. roseus.

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