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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
 112   113   114   115   116 
Genetic variability in wild and hatchery populations of commercially important fish: The common carp (Cyprinus carpio) MARYAM AHMADI; HADISEH KASHIRI; ALI SHABANI; ABASALI AGHAEI MOGHADAM
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190437

Abstract

Ahmadi M, Kashiri H, Shabani A, Moghadam AA. 2018. Genetic variability in wild and hatchery populations of commercially important fish: The common carp (Cyprinus carpio). Biodiversitas 19: 1468-1474. Common carp, Cyprinus carpio, is considered as one of the most important bony fish with high economic value in the Caspian sea. Since the population size of common carp has decreased during recent decades, restocking of the populations is done through releasing the hatchery-produced larvae into the Caspian Sea. In the present study, the genetic diversity of hatchery and wild populations of C. carpio was investigated using eight microsatellite loci (MFW7, MFW9, MFW13, MFW16, MFW17, MFW20, MFW26 and MFW28). A total of 145 different alleles were observed across all loci, with some of them being unique to each population. Although the allelic and gene diversity of hatchery populations tended to be lower compared to the wild populations, no significant differences (P>0.05) in genetic diversity parameters were observed among the wild and hatchery populations. In most cases, significant departure from Hardy-Weinberg equilibrium was observed, mainly because of the heterozygosity deficiency. Results from FST, RST and UPGMA analysis showed that the hatchery-reared population was the most differentiated and distant group. The results from this study are anticipated to provide important information for setting up more efficient strategies in conservation and restocking of C. carpio.
Morphological variation among fifteen superior robusta coffee clones in Lampung Province, Indonesia SRI RAMADIANA; DWI HAPSORO; YUSNITA YUSNITA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190438

Abstract

Ramadiana S, Hapsoro D, Yusnita Y. 2018. Morphological variation among fifteen superior robusta coffee clones inLampung Province, Indonesia. Biodiversitas 19: 1475-1481. This study aimed to characterize morphological variation among fifteensuperior robusta coffee clones in Lampung Province. The fifteen clones consisted of four clones released by the Indonesian Coffee andCocoa Research Institute (ICCRI), i.e. ‘BP 409’,‘BP936’, ‘BP939’, ‘SA 237’, together with eleven superior coffee clones selected byfarmers from Tanggamus District (‘Tugino’, ‘Wanto’, ‘Biyadi’, ‘Komari’, ‘Wardi’, ‘Wariso’) and from West Lampung District (‘TuguKuning’, ‘Tugu Hijau', ‘Tugu Biru', ‘Tugu Sari', ‘Lengkong'). Fifteen qualitative and seven quantitative morphological characters wereevaluated in a randomized complete block design with three replicates for each clone,each replication consisted of two plants. Fromeach plant, four samples were taken from four sides of the plant (north, south, west, and east). It was found that while somemorphological characters exhibited negligible variation among clones, there were significant differences between clones for othercharacters. The characters that did not differ significantly between clones were: shapes of leaf base and leaf tip; petiole color; leafvenation pattern; fruit disk shape; ripe-fruit color; and stipule shape. The characters that varied between clones were shape of leaf lamina(elliptical vs. lanceolate); fruit shape (round vs. oval); and shape of leaf margins. Morphological variation was also observed in somequantitative characters: canopy diameter; tree height; stem diameter; leaf length; leaf width; petiole length; stipule length; and number ofprimary branches.
Coral reefs recruitment in stone substrate on Gosong Pramuka, Seribu Islands, Indonesia MUHAMMAD ZAINUDDIN LUBIS; SRI PUJIYATI; DANIEL S PAMUNGKAS; MUHAMMAD TAUHID; WENANG ANUROGO; HUSNUL KAUSARIAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190435

Abstract

Lubis MZ, Pujiyati S, Tauhid M, Anurogo W, Kausarian H. 2018. Coral reefs recruitment in stone substrate on Gosong Pramuka, Seribu Islands, Indonesia. Biodiversitas 19: 1451-1458. Gosong Pramuka is a reef distribution area located in the center of the Seribu Islands of Jakarta, Indonesia. This research was conducted from April to June 2015, located within the Gosong Pramuka area, Kepulauan Seribu, Indonesia. This location has 4 observation stations: Exposed I and II and Shielded I and II. Coral reefs identified at the study sites consisted of 95 colonies, with colonies most abundant in Exposure Station I (35 colonies), and in the genus Acropora and Porites. Acropora coral growth is tabulated, branching, digitate and encrusting, and Porites are only sub-massive and massive. The average area obtained from recruiting coral colonies had a range of 25-50 cm2, and the average diameter of coral recruits was 9-12 cm. The results of this research determined the coral health index of the area is 2-3. Based on the CoralWatch method, the coral at the station where the research was conducted is classified as under stress conditions. The value of recalculated coral density obtained in this study was 0.22 colony/m2 at Exposure Station I, 0.11 colony/m2 at Shielded Station I, 0.13 colony/m2 at Exposure Station II, and in 0.11 colony/m2 at Shielded Station II. Temperatures in all four stations range from 30-32°C; this temperature range is within the optimum temperature range for coral growth. The depth at all four stations was in the ranged from 70-98 cm; this indicates the stations where the research was conducted is still within an optimum depth.
Post-release adaptation of Javan gibbon (Hylobates moloch) in Mount Malabar Protected Forest, West Java, Indonesia ANTON ARIO; AGUS PRIYONO KARTONO; LILIK BUDI PRASETYO; JATNA SUPRIATNA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190439

Abstract

Ario A, Kartono AP, Prasetyo LB, Supriatna J. 2018. Post-release adaptation of Javan gibbon (Hylobates moloch) in Mount Malabar Protected Forest, West Java, Indonesia. Biodiversitas 19: 1482-1491. Post-release adaptation study of Javan gibbon (Hylobates moloch) was conducted in twelve months from April 2016 to March 2017 in the Mount Malabar Protected Forest, West Java. We studied eleven Javan gibbons released between March 2014 to August 2016. The purpose of this study was to assess the adaptive ability of the released Javan gibbons. Data collection was conducted by focal animal sampling method with 5-minute interval recording time and ad libitum method. The average time allocation of Javan gibbon activities was the following: feeding 23.02±1,62%; moving 26.95±3.07%; resting 40.88±3.81%; socializing 7.56±3.55%; sexual 0.26±0.24%; and vocalizing 0.95±0.21%. We compared activity allocation data from this study and those from wild Javan gibbons and found similarities as follows: 47.60% at a family of Jowo-Bombom-Yani-Yudi, 62.45% at a pair of Moly-Nancy, 51.70% at a pair of Robin-Moni and 52.58% at a family of Mel-Pooh-Asri. Post-release adaptation of Javan gibbon is influenced by internal and external factors. Internal factor includes the ability of each individual to develop wild behavior according to its gender and age group, in terms of natural fruit consumption, brachiation movement, morning calls and alarm calls, as well as affiliative bonds among individuals. External factors include the ability of Javan gibbon to adapt to the environment, namely weather conditions and human presence.
Short Communication: First report of Thalamoporella rozieri (Bryozoa: Thalamoporellidae) from Andaman waters with reference to its epibiotic colonization on marine sponges MOHAMMED NAUFAL; K.A. JAYARAJ
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190444

Abstract

Naufal M, Jayaraj KA. 2018. Short Communication: First report of Thalamoporella rozieri (Bryozoa: Thalamoporellidae) from Andaman waters with reference to its epibiotic colonization on marine sponges. Biodiversitas 19: 1521-1526. Bryozoans are aquatic, sessile, colonial, fouling invertebrates, which are found in most marine habitats. Considering the ecological and economic consequence due to the biofouling behavior of bryozoans, a far-reaching study has been carried out on it throughout the world. However, Andaman waters are lacking the bryozoan research for last nine decades. A study on the bryozoan distribution in the littoral region in the eastern coasts of the Andaman Islands was carried out during August 2016. This is the first study on the intertidal bryozoans of Andaman Islands and identified a new report of bryozoan Thalamoporella rozieri from Andaman and Nicobar Waters. Tuberosities in the present T. rozieri colonies are large. The minute calcareous spicules are also examined. Our study has also come across an interesting association in which the epibiont bryozoan T. rozieri adhere to the basibiont sponge Placospongia sp on a big rock. The colony of epizoic T. rozieri on the sponge was lengthier and continuous than on other inert host substrata. This may be because of active substrate selection by settling larvae. As both are filter feeders, no deleterious effect was noticed either in the basibiont side of Placospongia or in the epibiont side of T. rozieri.
Comparative study on the diversity of endophytic actinobacteria communities from Ficus deltoidea using metagenomic and culture-dependent approaches ISRA JANATININGRUM; DEDY DURYADI SOLIHIN; ANJA MERYANDINI; YULIN LESTARI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190443

Abstract

Janatiningrum I, Solihin DD, Meryandini A, Lestari Y. 2018. Comparative study on the diversity of endophytic actinobacteria communities from Ficus deltoidea using metagenomic and culture-dependent approaches. Biodiversitas 19: 1514-1520. Actinobacteria endophytes of medicinal plants may play an essential role in producing a variety of critical bioactive compounds. However, the possible contribution of such actinobacteria to the pharmacological properties of traditional herbal remedies remains mostly unknown. For example, the diversity and attributes of actinobacteria endophytes in Ficus deltoidea, a small tree species that has long been used to treat diseases such as cancer, diabetes, and cardiovascular illnesses, have not been explored. Here, the actinobacteria endophyte community structure in F. deltoidea was investigated using both culture-dependent and metagenomics approaches. Based on morphological characteristics and 16S rRNA gene analysis, the dominant culturable actinobacteria isolates exhibited a close relationship with Streptomyces. The metagenomic technique using PCR-DGGE analysis of the 16S rRNA gene showed the presence of 11 OTUs in F. deltoidea tissue. Whereas the dominant culturable actinobacteria endophytes in F. deltoidea was Streptomyces, the metagenomic approach showed non-Streptomyces, particularly Rhodococccus and Verrucosispora, to be also important. Thus, results from both culture-dependent and metagenomic approaches provided useful indicators on the diversity and community structure of actinobacteria endophytes in F. deltoidea.
Cluster analysis of polyisoprenoid in oil palm (Elaeis guineensis) leaves in different land-uses to find the possible cause of yield gap from planting materials MOHAMMAD BASYUNI; RIDHA WATI; IRMA DENI; ANANDA RATU TIA; ETTI SARTINA SIREGAR; INDRA SYAHPUTRA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190440

Abstract

Basyuni M, Wati R, Deni I, Tia AR, Slamet B, Siregar ES, Syahputra I. 2018. Cluster analysis of polyisoprenoid in oil palm (Elaeis guineensis) leaves in different land-uses to find the possible cause of yield gap from planting materials. Biodiversitas 19: 1492-1501. The distribution and occurrence of polyprenols and dolichols in the leaves of oil palm (Elaeis guineensis Jacq.) plantations in different land-uses in North Sumatra, Indonesia were analyzed using two-dimensional thin layer chromatography (2D-TLC). Eighty-one of oil palm leaves were sampled to represent twenty-seven sites of land-uses, namely paddy field (four locations), mangrove (three locations) in Lubuk Kertang, Langkat, North Sumatra. In addition, samples from four groups of smallholders in Stabat, Langkat, six sites in Bangun Bandar, Serdang Bedagai, and ten sites on the campus of Universitas Sumatera Utara (USU), North Sumatra were collected. In the leaves, only one type (type II) with respect to the distribution of polyisoprenoids was detected: having the presence of both polyprenols and dolichols. Either type I, having predominance of dolichols over polyprenols or type III, displaying dominating polyprenols over dolichols were not observed. Results also showed that chain-length distribution of ficaprenols (C50-C60) without longer polyprenols (C85-C100) and dolichols of C85-C100 was detected in the paddy field, mangroves, and one site in USU campus. This polyisoprenoid profile was close to dura type of Elaeis guineensis. By contrast, the remaining land-uses had ficaprenols and longer polyprenols, and dolichols (C85-C100), which belong to tenera or pisifera type. To confirm this finding, a dendrogram was constructed. Cluster analysis demonstrated that twenty-seven sites of E. guineensis were grouped into appropriate types of dura, pifiera, and tenera accordingly, indicating that the existence of polyisoprenoids in E. guineensis was a chemotaxonomic marker. The finding of polyisoprenoid pattern of E. guineensis as dura type in mangrove and paddy field sites may reveal significant causes of yield gap in oil palm plantation from planting materials.
Ethnoveterinary medicine and health management of Pelung Chicken in West Java, Indonesia INDRAWATI Y. ASMARA; DANI GARNIDA; MARINA SULISYTATI; SAFITRI TEJANINGSIH; RUHYAT PARTASASMITA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190441

Abstract

Asmara IY, Garnida D, Sulisytati M, Tejaningsih S, Partasasmita R. 2018. Ethnoveterinary medicine and health management of Pelung Chicken in West Java, Indonesia. Biodiversitas 19: 1502-1508. Pelung chicken is a race group of chickens. The spread of Pelung chicken is in the district of Cianjur, and now become widespread to several districts in West Java. The spread of Pelung chicken does occur because as a poultry, it is attractive  to people who like to keep the chicken. The chickens are mainly raised as singing chickens. Some studies showed that health-management practices and disease control measures present challenges in maintaining the existence of the chickens. A survey was carried out to determine health management and the use of ethnoveterinary in raising Pelung chickens. Structured questionnaires were used to collect data involving 131 Pelung keepers in four districts in West Java Province including Cianjur, Sukabumi, Bandung and Garut Districts. The data was analyzed using descriptive analysis. The result showed that respiratory diseases such as Snot (Infectious Coryza) and Tetelo (Newcastle Disease) were main diseases for Pelung chickens. Vaccination combined with ethnoveterinary medicines was a common practice for Pelung keepers to prevent and cure chicken diseases. More than five major medicinal plants were found to be used to cure various chicken diseases in which leaves of papaya and turmeric were the most mentioned by respondents. Documentation and investigations regarding plant properties and their applications for Pelung chickens disease cure should be carried in the future. A combination of vaccination, ethnoveterinary medicine and good hygiene are required to control deadly diseases such as Newcastle Disease. Government intervention would be required to improve keepers' skills and awareness in chicken health management.
Short Communication: Mollusks biodiversity of Lake Sevan, Armenia IRINA V. MASHKOVA; TATYANA G. KRUPNOVA; ANASTASIYA M. KOSTRYUKOVA; LAURA J. HARUTYUNOVA; HOVHANNISYAN S. VARUZHAN; NIKITA E. VLASOV
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190442

Abstract

Mashkova IV, Krupnova TG, Kostryukova AM, Harutyunova LJ, Varuzhan HS, Egorov NO. 2018. Short Communication: Mollusks biodiversity of Lake Sevan, Armenia. Biodiversitas 19: 1509-1513. The paper considers mollusks biodiversity in the freshwater lakes of Lake Sevan, Armenia. Lake Sevan is the largest water body in Armenia and one of the largest freshwater lakes in Eurasia. Since 1930 it has been actively used for irrigating Ararat plain and in hydropower. So, its water level fell by 20 m, and its volume became 40% less. Since mid-2000 when two tunnels had been built water level started to grow. For the last 6 years, water level was reported to grow. As a result of our study, 11 aquatic mollusks species (10 gastropod and 1 bivalve taxa) were currently found living in the Sevan lake. We found Lymnaea stagnalis (Linnaeus, 1758), Radix auricularia (Linnaeus, 1758), R. tumida (Held, 1836), R. balthica (Linnaeus, 1758), R. lagotis (Schrank, 1803), Galba truncatula (O. F. Müller, 1774), Planorbis planorbis (Linnaeus, 1758), Bathyomphalus contortus (Linnaeus,1758), Gyraulus acronicus (Férussac, 1807), Valvata piscinalis (O. F. Müller, 1774), Euglesa casertana (Poli, 1791). Lymnaeidae represented the largest number of species. The most abundant species was Lymnaea stagnalis (Linnaeus, 1758).
Indigenous endophyte bacteria ability to control Ralstonia and Fusarium wilt disease on chili pepper YULMIRA YANTI; WARNITA WARNITA; REFLIN REFLIN; MUNZIR BUSNIAH
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190446

Abstract

Yanti Y, Warnita, Reflin, Busniah M. 2018. Indigenous endophyte bacteria ability to control Ralstonia and Fusarium wilt disease on chili pepper. Biodiversitas 19: 1532-1538. Bacterial wilt and Fusarium wilt caused by Ralstonia syzigii subsp. indonesiensis and Fusarium oxysporum f.sp. capsici (Foc), respectively are the most damaging vascular pathogens in chili pepper (Capsicum annuum L.) and many other crops limiting their production, worldwide. Various strategies have been developed to control wilt pathogens including the application of chemical pesticides, which generally considered as the most effective and fastest strategy for plant disease management. However, effective chemicals for wilt pathogens of chili pepper plants are not available, yet. Endophytic bacteria considered as one of options to control vascular wilt disease because of its ability to live and colonize in internal roots of plants. Previous research has been done to select endophytic indigenous bacteria isolates which can promote growth rate of chili pepper. The purpose of the research was to identify the selected indigenous endophyte bacteria isolates acquired from our previous study using 16S rRNA identifications and to screen the selected endophytic indigenous bacteria to control both R. syzigii subsp. indonesiensis and Foc. Results from 16S r RNA analysis showed that all of 9 isolates were identified as Bacillus spp., such as Bacillus cereus ATCC 14579, Bacillus pseudomycoides strain NBRC 101232, Bacillus toyonensis strain BCT-7112, Bacillus thuringiensis strain ATCC 10792, Bacillus weihenstephanensis strain DSM 11821, Bacillus mycoides strain 273, Bacillus cereus strain NBRC 15305, Bacillus bingmayongensis strain FJAT-13831 and Bacillus manliponensis strain BL4-6. Our results showed that most of endophytic bacteria isolates application could control both bacterial and Fusarium wilt diseases. Six out of nine isolates can suppress R. syzigii subsp. indonesiensis without developing any symptoms and five isolates could suppress symptoms of Foc. Isolates Bacillus pseudomycoides strain NBRC 101232 Bacillus thuringiensis strain ATCC 10792 and Bacillus mycoides strain 273 were potential for control Foc and R. syzigii subsp. indonesiensis in chili pepper.

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