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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,259 Documents
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Status and diversity of arbuscular mycorrhizal fungi and its role in natural regeneration on limestone mined spoils ANUJ KUMAR SINGH; JAMALUDDIN JAMALUDDIN
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120208

Abstract

Singh AK, Jamaluddin (2011) Status and diversity of arbuscular mycorrhizal fungi and its role in natural regeneration on limestone mined spoils. Biodiversitas 12: 107-111. Limestone mined spoils are devoid of adequate population of beneficial microbial flora. Arbuscular mycorrhizal fungi (AMF) are very important constituent of plant- soil-microbe system. In mined spoils the population of AMF is greatly reduced and hence the spoils become very inhospitable for establishment of vegetation. In the present investigation, status of AMF population and its effect on natural regeneration process is studied. It is well known fact that the arbuscular mycorrhizalfungi play very important role in establishment of vegetation in degraded lands. Plantation of seedlings inoculated with arbuscular mycorrhizal fungi provide favorable soil conditions for naturally growing vegetation in the mined overburden spoils. Physico-chemical properties of soil are converted suitable for planted species and thus it allows other species to grow and also provide shade to protect the herbaceous vegetation. Introduction of plant species attracts immigration of other species and if they established, may result into a very distinctive floral cover on disturbed lands. Thus, invasion of native plant species along with planted species may play a significant role in increasing the plant diversity on mined spoils.
Review: Recent status of Selaginella (Selaginellaceae) research in Nusantara AHMAD DWI SETYAWAN
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120209

Abstract

Setyawan AD. 2011. Recent status of Selaginella (Selaginellaceae) research in Nusantara. Biodiversitas 12: 112-124. Selaginella Pal. Beauv. (Selaginellaceae Reichb.) is a cosmopolitan genus that grows in tropical and temperate regions. Some species of Selaginella have widely distribution and tend to be invasive, but the others are endemics or even, according to IUCN criteria, endangered. Nusantara or Malesia (Malay Archipelago) is the most complex biogeographic region and rich in biodiversity. It is one of the biodiversity hotspotof Selaginella, whereas about 200 species of 700-750 species are exist. Selaginella has been survived for 440 mya without any significant morphological modification, but extinction of tree-shaped species. Selaginella have similar morphological characteristics, particularly having heterospore form and loose strobili; and is classified as one genus and one family. However, individual species has high morphological variation caused by different edaphic and climatic factors. Genetic studies indicate high polymorphism among Selaginella species. Selaginella had been used as complementary and alternative medicines treated to postpartum, menstrual disorder, wound, etc. Biflavonoid – the main secondary metabolites – gives this benefit and is especially used as anti oxidant, anti-inflammatory, and anti cancer in modern pharmaceutical industry. The other metabolites, trehalose, potentially act as molecular stabilizer in biological based industry. Metabolite profiles can also be used to identify Selaginella by its species, time and harvest age, and locations. Since most of Selaginella grows on moist, organically rich, and well drained soils, which is vulnerable to forest degradation and global warming, it needs more conservation priority. Biosystematics and ethnobotanical researches of Nusantara Selaginella is needed to expand taxonomic status and bioprospecting of this bioresources.
Inventory and habitat study of orchids species in Lamedai Nature Reserve, Kolaka, Southeast Sulawesi DEWI AYU LESTARI; WIDJI SANTOSO
Biodiversitas Journal of Biological Diversity Vol. 12 No. 1 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120106

Abstract

Lestari DA, Santoso W (2011) Inventory and habitat study of orchids species in Lamedai Nature Reserve, Kolaka, Southeast Sulawesi. Biodiversitas 12: 28-33. Orchid is one of the ornamental plants which have been high commercial value. Therefore, orchid often has been over exploitation. Finally, some of orchid species are becoming threatened or even endangered. Purwodadi Botanical Garden as an institute of ex-situ conservation play role with it. The aim of this research is to inventory orchid’s species in Lamedai Nature Reserve, Kolaka, Southeast Sulawesi by explorative method. Observation for habitat study was focused on some ecological factors supported to orchids growth like host tree, zone growth on host tree, abundance of sunlight, thickness of substrate (moss), orchid species and number of individual species. The result showed that there were 27 orchids species, consist of, 25 species (16 genera) epiphytic orchid and 2 species terrestrial orchid such as Eulophia keithii var. celebica and Goodyera rubicunda (Blume) Lindl. The host preference for theepiphytic orchid is the group of Myrtaceae family like Syzygium sp., Metrosideros vera Niederen and Metrosideros sp. They mostly grow on the main stem of the tree zone 1 on thick substrate (moss) and get a little abundance of sunlight (calm).
Population analysis of the javan green peafowl (Pavo muticus muticus Linnaeus 1758) in Baluran and Alas Purwo National Parks, East Java JARWADI BUDI HERNOWO; HADI SUKADI ALIKODRA; ANI MARDIASTUTI; CECEP KUSMANA
Biodiversitas Journal of Biological Diversity Vol. 12 No. 2 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120207

Abstract

Hernowo JB, Alikodra HS, Mardiastuti A, Kusmana C (2011) Population analysis of the javan green peafowl (Pavo muticus muticus Linnaeus 1758) in Baluran and Alas Purwo National Parks, East Java. Biodiversitas 12: 99-106. The javan green peafowl (Pavo muticus muticus) have high pressure to the population and the habitat. The distribution of the bird at Java Island is clumped randomly at several types in condition of fragmented and isolated habitat and it has small individual number every unit population. Baluran and Alas Purwo National Parks are one of distribution javan green peafowl; it was chosen for study on the population analysis. The research was aimed to gain data and information on demographic population of javan green peafowl. The individual number of the bird was countedby call count transect method and councentration count. The population demographic parameter (individual number, age structure and sex ratio) of javan green peafowl was analyzed. The result shown that individual number of the javan green peafowl at Baluran National Park (BNP) was 69.1 birds (in 2006) and 70.5 birds (in 2007) not much differ, but it compared with the observation in1995 approximately was 117.7 birds had significant different. The green peafowl population at BNP declined around 47.50% during 12 years. Meanwhile the population at Alas Purwo National Park (APNP) was 80.7 birds (in 2006) and 73.5 birds (in 2007), if compared to observation in 1998 only 43 birds and in 2006 was 80.0 birds, the population grow up 86.05% during 8 years. The age structure of population indicated that both population (BNP and APNP) tend to unbalance pyramidal, where adult birds more abundance than sub adult or juvenile. The birds sex ratio at both (APNP and BNP) indicated that the peafowl life in polygyny system 1 male: 4 female > 1 male: 2.5 female.
Herpetofaunal community structure and habitat associations in Gunung Ciremai National Park, West Java, Indonesia AWAL RIYANTO
Biodiversitas Journal of Biological Diversity Vol. 12 No. 1 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120108

Abstract

Riyanto A (2011) Herpetofaunal community structure and habitat associations in Gunung Ciremai National Park, West Java, Indonesia. Biodiversitas 12: 38-44. Community structure and habitat associations of amphibians and reptiles on both rainy and dry seasons of six habitat types of three sites in Gunung Ciremai National Park, West Java were investigated in March and October 2008. The data of herpetofauna was obtained by opportunistic searches. Herpetofaunal diversity for each habitat was determined by using Shannon Wienerindex, the species abundance per unit area was calculated by using Margalef’s index, and the homogeneity of distribution of species in relation to other species in a sampled per unit area was evaluated using Evenness index. The similarity in herpetofauna communities among habitat types was determined using Sorensen’s coefficient, meanwhile the Jaccard’s index was used to estimate similarities in habitat utilization. Thus, both community similarities and habitat utilization displayed in cluster dendrogram. A total of 46 amphibian and reptile taxa were recorded, comprising 16 anurans, 22 lizards and 8 snakes. Of the total taxa, four anurans are endemic and unusual specimens probably new in sciences referred to the genus Cyrtodactylus and Eutropis. There were differed in sequential of biological indices among habitat types but not much different in their values. The result of cluster analysis showed different patterns on the community similarity among habitat type and habitat utilization during rainy and dry seasons.Key words: community, habitat utilization, amphibians, reptiles, Gunung Ciremai, Indonesia
Infection of Anisakis sp. larvae in some marine fishes from the southern coast of Kulon Progo, Yogyakarta EKO SETYOBUDI; SOEPARNO SOEPARNO; SENNY HELMIATI
Biodiversitas Journal of Biological Diversity Vol. 12 No. 1 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120107

Abstract

Setyobudi E, Soeparno, Helmiati S (2011) Infection of Anisakis sp. larvae in some marine fishes from the southern coast of Kulon Progo, Yogyakarta. Biodiversitas 12: 34-37. The prevalence, intensity and distribution of Anisakis sp. larvae which infected some fishes at the southern coast of Kulon Progo District were investigated. Totally 95 fish specimens were collected during December 2007. Results of the present study indicated that the Anisakis sp. larvae infected various fish species i.e: Trichiurus lepturus, Parupeneus sp., Lutjanusmalabaricus, Terapon jarbua and Caesio sp. Prevalence and mean intensity of infection showed the differences between fish species. The highest mean intensity of infection was found in L. malabaricus (7.71 larvae/infected host) and T. Lepturus (3.18 larvae/infected host), while the lowest intensity of infection was found in Parupeneus sp., T. jarbua and Caesio sp. (1 larvae/infected host). Infected host organs were body cavities (peritoneum), digestive tract, gonads, and liver. Presence of this parasite may be harmful for consumer; however it can be used for several ecological studies as biological tags.Key words: Anisakis sp., infection, southern coast of Kulon Progo District.
Species identification and selection to develop agroforestry at Lake Toba Catchment Area (LTCA) NURHENI WIJAYANTO
Biodiversitas Journal of Biological Diversity Vol. 12 No. 1 (2011)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d120110

Abstract

Wijayanto N (2011) Species identification and selection to develop agroforestry at Lake Toba Catchment Area (LTCA). Biodiversitas 12: 52-58. In order to improve land productivity surrounding the LTCA, the existing ITTO project tries to establish agroforestry system. The system will be designed to meet consideration of both sides. on one side is to generate the people awareness of the forest and land rehabilitation, and on the other side is to support the poverty reduction. The aims of this research are: species identification and selection to develop agroforestry at LTCA. Data collecting was carried out with: interview, group discussion, field observation, divining manual study, and PRA. The diversity of the available crop kind shows the number of choices to be developed by the farmer. The farmers generally have the economic objective to develop agroforestry, including increase in net income, risk reduction, increase in environmental service, and the wealth and savings accumulation. Various types of agricultural crops, plantations and forest trees were found in LTCA. They can be the basis for building a wide variety of agroforestry systems.Key words: catchment area, agroforestry system, sequential, integrated.
Marine Actinomycetes screening of Banten West Coast and their antibiotics purification ROFIQ SUNARYANTO; BAMBANG MARWOTO
Biodiversitas Journal of Biological Diversity Vol. 11 No. 4 (2010)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d110402

Abstract

Sunaryanto R, Marwoto B (2010) Marine Actinomycetes screening of Banten West Coast and their antibiotics purification. Biodiversitas 11: 176-181. Isolation and purification of active compounds produced by marine Actinomycetes has been carried out. Marine sediment samples were obtained from six different places at Anyer, Banten West Coast in October 20, 2007. Isolation was carried out using two methods pretreatments, acid treatment and heat shock treatment. A total of 29 Actinomycetes isolates were obtained from the various sediment samples collected, then tested for antimicrobial test against Escherichia coli ATCC 25922, Staphylococcus aureus ATCC25923, Pseudomonas aeruginosa ATCC27853, Bacillus subtilis ATCC 66923, Candida albicans BIOMCC00122 and Aspergillus niger BIOMCC00134. Identification of potential isolate was carried out using 16S rRNA. Purification of active compound was carriedout using silica gel column chromatography and preparative HPLC. Result of this research showed that isolate A11 produced the most active compound against Gram-positive and Gram-negative bacteria. Morphology and identification test using 16S rRNA gen showed that isolate A11 is Streptomyces sp. Production of active compound from isolate A11 used yeast peptone medium. The single peak of active compound was detected by HPLC and showed retention time on 8.35 min and maximum absorbance UV visible of antibiotic was 210 nm and 274.5 nm. Active purified compound showed inhibition activity to Gram-positive and Gram-negative bacteria. Minimum inhibitory concentration (MIC) to E. coli ATCC 25922 was 27 μg/mL, P. aeruginosa ATCC 27853 68.7 μg/mL, S. aureus ATCC 2592380.2 μg/mL, and B. subtilis ATCC 66923 73.7 μg/mL.Key words: marine Actinomycetes, isolation, screening, antimicrobial activity, minimum inhibitory concentration
Anatomy and morphology character of five Indonesian banana cultivars (Musa spp.) of different ploidy level ISSIREP SUMARDI; MERA WULANDARI
Biodiversitas Journal of Biological Diversity Vol. 11 No. 4 (2010)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d110401

Abstract

Sumardi I, Wulandari M (2011) Anatomy and morphology character of five Indonesian banana cultivars (Musa spp.) of different ploidy level. Biodiversitas 12: 167-175. In Indonesia there are many cultivars of banana, and some of them produce edible fruits. Beside their morphology, the character which necessary as a tool for classification is anatomical character. The aim of this research were to describe the anatomical character and morphology of fives Indonesian banana cultivars based on their level of ploidy. The cultivars were collected from Banana Germplasm Plantation, Yogyakarta District, Indonesia. The samples of roots, rhizome, and leaf were collected from five banana cultivars i.e.: Musa acuminata cv Penjalin, M. balbisiana cv Kluthuk warangan, M. acuminata cv Ambon warangan, M. paradisiaca cv Raja nangka, and M. paradisiaca cv Kluthuk susu. For anatomy observation samples were prepared using paraffin method, stained with 1% safranin in 70% ethanol. To observe the structure of stomata and epidermis surface, slide were prepared using modification of whole mount method. Slides were observed using Olympus BHB microscope completed with Olympus camera BM-10A. Stem and leaf morphology character of diploid level (AA and BB genome) is different with triploid level (AAA, AAB, and ABB genome). Anatomy and morphology character of root and rhizome of banana in diploid level (AA and BB genome) and triploid level (AAA, AAB, and ABB genome) is quite similar. Distribution of stomata is found in leaf and pseudostem. Stomata is found in adaxial and abaxial epidermis layer. The size of guard cells in triploid cultivars was longer than that diploid cultivars. The root composed of epidermis layer, cortex and cylinder vascular of five cultivar’s root show anomalous structure. Rhizome consist of peripheric and centre zone. Anatomically, this was no differences in the rhizome structure among five banana cultivars. The row of vascular bundles acts as demarcation area between peripheric and central zone. In the cultivar with BB genome (diploid) and ABB genome (triploid) the row of vascular bundle was not found. The differences of leaf anatomy were base on: size and number of stomata distribution, number of subsidiary cells, number of hypodermal layers, structure and number of parenchyma palisade, size of airspace in petiole and mesophyll and the vascular bundle structure.Key words: anatomical character, morphology, banana cultivar, ploidy level
Plant diversity in natural forest of Guilan Rural Heritage Museum in Iran ROYA ABEDI; HASSAN POURBABAEI
Biodiversitas Journal of Biological Diversity Vol. 11 No. 4 (2010)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d110403

Abstract

Abedi R, Pourbabaei H (2010) Plant diversity in natural forest of Guilan Rural Heritage Museum in Iran. Biodiversitas 11: 182-186. The aim of this study was to determine plant species diversity in Guilan Rural Heritage Museum in Iran. Eighty nine sampling plots were sampled based on systematic random method. Data analysis was carried out using diversity indices of richness, diversity (Shannon-Wiener, Simpson, Mc Arthur’s (N1) and Hill’s (N2) and Smith and Wilson’s evenness index (Evar). Results indicated that Rosaceae and Labiatae families have the highest number of species. Quercus castaneifolia and Ruscus hyrcanus were the most dominant woody plants for class of tree and shrub, respectively. Carex divolsa and Viola odorata were dominant herbaceous species. Herbaceous layer had the highest richness, evenness and diversity. Mc Arthur’s N1 index had the highest value among diversity indices.Key words: diversity, richness, evenness, Rural Heritage Museum, Guilan.

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