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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Short Communication: Variations of morphology, anatomy, and metabolite profiles of Citrus reticulata Blanco cv. Tawangmangu grafts produced by shoot tip grafting using several rootstocks Einstivina Nuryandani; Ratna Susandarini; Ari Indrianto; Tri Rini Nuringtyas; Artnice Mega Fathima; Siti Subandiyah
Biodiversitas Journal of Biological Diversity Vol. 21 No. 10 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211028

Abstract

Abstract. Nuryandani E, Susandarini R, Indrianto A, Nuringtyas RT, Fathima AM, Subandiyah S. 2020. Short Communication: Variations of morphology, anatomy, and metabolite profiles of Citrus reticulata Blanco cv. Tawangmangu grafts produced by shoot tip grafting using several rootstocks. Biodiversitas 21: 4671-4676.  Cultivation of Citrus reticulata Blanco cv. Tawangmangu, one of leading mandarin cultivars in Indonesia, remains challenging due to the limitations of suitable rootstocks. The use of suitable rootstocks will greatly determine the success of grafting and affect the performance of the scion. This study aimed to evaluate the morphological, anatomical, and metabolic profiles of grafts between Tawangmangu and rootstocks from various species using shoot tip grafting. Observations of morphological, anatomical, and metabolite variation were carried out eight weeks after the beginning of the growth of the scions. The morphological characters were observed on leaves and stems of the scions. Anatomical data were obtained from the examination of longitudinal sections of grafts prepared using paraffin-embedded method. Analysis of metabolite profiles was performed using LC-MS. The results showed that for two of the three rootstocks used, C. ichangensis × C. reticulata cv. Austera (Japansche Citroen (JC)) and Citrus (Fortunella) japonica (Fortunella) scion growth was vigorous and resulted in a large number of leaves and long stems. Morphological variation was found in the leaf shape, as indicated by wider and wavy leaves of grafts with Fortunella, while narrower and straighter leaves were found in grafts with JC. The grafting onto the third rootstock, C. hystrix, induced dwarfing of the scions. Variation in the anatomical profiles was found in vascular vessels, and in exodermic and endodermic cell sizes. Differences in metabolic profiles of the grafts were found compared to scion and rootstocks. Results of this study provide an important contribution to the successful improvement of Tawangmangu.
The diversity of wild orchids in the southern slope of Mount Merapi, Yogyakarta, Indonesia eight years after the 2010 eruption Febri Yuda Kurniawan; Fauzana Putri; Ahmad Suyoko; Himawan Masyhuri; Maya Purqi Sulistianingrum; Endang Semiarti
Biodiversitas Journal of Biological Diversity Vol. 21 No. 9 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210964

Abstract

Abstract. Kurniawan FY, Putri F, Suyoko A, Masyhuri H, Sulistianingrum MP, Semiarti E. 2020. The diversity of wild orchids in the southern slope of Mount Merapi, Yogyakarta, Indonesia eight years after the 2010 eruption. Biodiversitas 21: 4457-4465. The ecosystem of the slopes of Mount Merapi is mountain tropical forest which is frequently affected by volcanic activities. The dynamics of the volcano affect the diversity and abundance of orchids in the ecosystem. Tritis is an area included in the Turgo Hill of the southern slope of Mount Merapi and is under the management of Mount Merapi National Park. The ecosystem in Tritis area classified as lower mountain forest and it has been affected by Mount Merapi eruption. This study aimed to do an inventory of orchid species in Tritis to know the diversity and abundance of orchids that exist in this area. In particular, we were interested to investigate the diversity after the 2010 eruption. The sampling was done using plot method by establishing four observation plots with size of each plot was 500 m x 20 m. The orchids found were identified using literature and we calculated the density, frequency, relative density, relative frequency and important value index. This study found 24 species of orchids, consisting of 15 species of epiphytic orchids, 6 terrestrial species, 2 holomycotropic species and 1 semiterrestrial species. There were 6 species of orchids with the highest density and 2 species with the highest frequency value. Thrixspermum sp. and Mycaranthes oblitterata were the most dominant species in Tritis based on important value index. Overall, the diversity of orchids in Tritis can be categorized as high, likely because Tritis environment supports the growth of epiphytic orchids, but it is less favorable for the growth of terrestrial, holomycotropic and semiterrestrial orchids. The results of this study can serve as baseline information to monitor the dynamics of orchid diversity and abundance in relation to the highly volcanic activities of Mount Merapi.
Mangrove associated macrobenthos community structure from an estuarine island MD. HABIBUR RAHMAN; M. BELAL HOSSAIN; Ahasan Habib; MD. ABU NOMAN; SHUVAGATO MONDAL
Biodiversitas Journal of Biological Diversity Vol. 22 No. 1 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220130

Abstract

Abstract. Rahman MDH, Hossain MB, Habib A, Noman MDA, Mondal S. 2021. Mangrove associated macrobenthos community structure from an estuarine island. Biodiversitas 22: 247-252. Macroinvertebrate living on or around the mangroves has not been or less investigated in Bangladesh. This study was carried out to describe the density, distribution, and community structure of mangrove associated macrobenthos in Nijhum Dwip, central coast of Bangladesh. A total of 17 taxa were identified belonging to mainly Polychaetes (67.37%), Mysids (23.53%), Isopods (3.83%), Amphipods (0.58%), and Gastropods (0.29%). Polychaetes were dominant by contributing 67.37% of total macrobenthos. The number of benthic fauna ranged from 359 to 1617 inds./m2 with a mean value of 1003.93± 400.3 inds./m 2 There was no significant difference observed (p > 0.05) in the abundance of macrofauna among the stations. The maximum Shannon-Wiener Index (H’) of species diversity was found at St2 (1.323) and the lowest at St4 (0.8) in the monsoon period possibly due to high rainfall and disturbance of benthic habitat. The Shannon-Wiener diversity values suggest the area was less polluted. The information from the present study can be used to measure the impacts of pollution to conserve biodiversity in sustainable manner.
Community structure of arboreal and soil-dwelling arthropods in three different rice planting indexes in freshwater swamps of South Sumatra, Indonesia Tili Karenina; Siti Herlinda; Chandra Irsan; Yulia Pujiastuti; Hasbi Hasbi; Suparman Suparman; Benyamin Lakitan; Harman Hamidson; Abu Umayah
Biodiversitas Journal of Biological Diversity Vol. 21 No. 10 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211050

Abstract

Abstract. Karenina T, Herlinda S,  Irsan C, Pujiastuti Y, Hasbi, Suparman, Lakitan B, Hamidson H, Umayah A. 2020. Community structure of arboreal and soil-dwelling arthropods in three different rice planting indexes in freshwater swamps of South Sumatra, Indonesia. Biodiversitas 21: 4839-4849.  Differences in the index of rice planting can cause differences in the structure of the arthropod community. This study aimed to characterize the community structure of the arboreal and soil-dwelling arthropods in the three different rice planting indexes (PI) in the freshwater swamps of South Sumatra.  Sampling of the arthropods using D-vac and pitfall traps was conducted in the three different rice planting, namely one (PI-100), two (PI-200), and three (PI-300) planting indexes of the rice. The results of the study showed that the dominant predatory arthropod species in the rice fields were Pardosa pseudoannulata, Tetragnatha javana, Tetragnatha virescens, Pheropsophus occipitalis, Paederus fuscipes, and the dominant herbivorous insects were Leptocorisa acuta, Nilavarpata lugens, and Sogatella furcifera. The abundance of arboreal predatory arthropods was the highest in the PI-300 rice and the lowest in the PI-100 rice.    The abundance of soil-dwelling arthropods was the highest in the rice PI-100, and low in the rice PI-200 and PI-300, but the rice PI-100 had the highest abundance of the herbivorous insects. The rice PI-300 was the most ideal habitats to maintain the abundance and the species diversity of the arboreal predatory arthropods. Thus, the rice cultivation throughout the year was profitable in conserving and maintaining the abundance and species diversity of the predatory arthropods.
Screening of plant collection of Cibodas Botanic Gardens, Indonesia with anticancer properties Risha Pratiwi; Yati Nurlaeni
Biodiversitas Journal of Biological Diversity Vol. 21 No. 11 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211125

Abstract

Abstract. Pratiwi RA, Nurlaeni Y. 2020. Screening of plant collection of Cibodas Botanic Gardens, Indonesia with anticancer properties. Biodiversitas 21: 5186-5229. Cancer is a life-threatening disease worldwide. One approach to developing effective treatment in fighting cancerous cells is to obtain anticancer drug candidates from natural resources, such as plants. This study aimed to inventory and categorize plant collections in Cibodas Botanic Gardens (CBG), West Java, Indonesia that has anticancer properties in a detailed and comprehensive manner. Literature research was conducted in international scientific databases using several keywords expressing anticancer properties to produce list of plant species potential for anticancer. The results of this research were then cross-checked with the plant collection database of CBG. List of plants exhibits anticancer activities were then categorized based on the IC50 values (an indicator of cytotoxicity). Our result showed 291 species from 90 families of CBG plant collection harbor anticancer properties. Among them, 93, 100, 36, and 62 species have IC50 values under Class I (strong), Class II (moderate), Class III (inactive), and Class IV (insufficient IC50 data), respectively. The families with the highest number of potential anticancer plants are Lauraceae, Leguminosae, Meliaceae, Myrtaceae, Moraceae, Cupressaceae, Asparagaceae, Euphorbiaceae, Compositae, Clusiaceae, Lamiaceae, Apocynaceae, Adoxaceae, Amaryllidaceae, and Elaeocarpaceae. Species that have strong anticancer activities include Acacia farnesiana, Aglaia edulis, A. elliptica, A. silvestris, Artocarpus elasticus, Bauhinia strychnifolia, Buxus microphylla, Calophyllum soulattri, Cerbera manghas, Cocculus orbiculatus, Cryptocarya chinensis, C. konishii, C. laevigata, Dalbergia parviflora, Diospyros discolor, Erythrina abyssinica, Etlingera elatior, Ficus fistulosa, Garcinia x mangostana, Hemerocallis fulva, Jatropha gossypiifolia, Panax ginseng, Podocarpus macrophyllus, Psidium cattleianum, Sansevieria ehrenbergii, Tacca chantrieri, Toona sinensis, Viburnum odoratissimum, and V. Sambucinum. Even Serenoa repens and Taxus sumatrana contain active compounds that have been commercialized as anticancer drugs. The data resulted from this study can serve as baseline information for further research in drug discovery and development for anticancer treatments using living plant specimens collected in CBG. CBG has a great prospect of medicinal plants that require further studies for formulating anticancer drug as an alternative natural resource.
The effect of slope level and hydroseeding formula on the growth of Cyperus brevifolius and Pueraria javanica seedlings Zairina Anisa; Yani Quarta Mondiana
Biodiversitas Journal of Biological Diversity Vol. 21 No. 11 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211104

Abstract

Abstract. Zairina A, Mondiana YQ. 2020. The effect of slope level and hydroseeding formula on the growth of Cyperus brevifolius and Pueraria javanica seedlings. Biodiversitas 21: 5008-5012. The aim of this study was to analyze the effect of the slope level on the growth of green kyllinga (Cyperus brevifolius) and puero (Pueraria javanica) seedling in a hydroseeding formula. The hydroseeding mixture consists of plant seeds, compost, soil conditioner, manure, and water. In addition, to all hydroseeding compositions, guar gum and a local microorganism mix were mixed until colloidal mulch was obtained. This study applied factorial design with slope level dan hydroseeding treatment as independent variables, while seed height, number of shoots, and number of leaves were the dependent variables. Data were replicated four times. The hydroseeding formula had a significant effect on all variables, except for the height of C. brevifolius seedlings. There was a significant interaction effect between the slope level and hydroseeding treatment on the germination rate of both species but the effect of this interaction was not significant on plant height and leaf number. The best germination rates were found in boxes with a slope of 100%. This situation was consistent for both species. This indicated that both species had the potential to be used as pioneer plants in post-landslide reclamation with a slope of 100%.
Evaluation of yield and pest and disease resistance of cocoa clones in Kolaka District, Southeast Sulawesi, Indonesia rubiyo rubiyo; yovita anggita dewi; CHANDRA INDRAWANTO; IMRAN IMRAN; AGUS SALIM; BAHARUDIN BAHARUDIN; M.T. RATULE
Biodiversitas Journal of Biological Diversity Vol. 21 No. 12 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211215

Abstract

Abstract. Rubiyo, Dewi YA, Imran, Salim A, Baharudin, Indrawanto C, Ratule MT. 2020. Evaluation of yield and pest and disease resistance of cocoa clones in Kolaka District, Southeast Sulawesi, Indonesia. Biodiversitas 21: 5698-5607. Cocoa is one of the main plantation commodities in Indonesia. It is an important source of foreign exchange and employment. Currently, Indonesian cocoa production and productivity, including in Southeast Sulawesi, are declining due to pests and diseases. In addition, there is a lack of high-quality and high-yielding clones. This study aimed to evaluate the quality of cocoa clones and resistance to cocoa pod borer (CPB) and cocoa pod rot (CPR) disease caused by the fungus Phytophthora palmivora. The study tested 12 cocoa clones, which included four high-yielding clones. The research location was in Lambandia Subdistrict, Kolaka District, Southeast Sulawesi Province, Indonesia. Clonal planting material was propagated by grafting in 2010. The study used a randomized block design and the treatments consisted of 20 plants of each cocoa clone with three replications. The clones were evaluated from 2018 to 2019. The observed variables included resistance to CPB and CPR. The results of the study based on the quality component showed that the clones MT, M04, and M01 had the highest average weight per one dry bean of 1.55 g, 1.64 g, and 1.24 g, respectively. Beans produced by clones MT, M01, and M04 had an average fat content of 53.36%, 52.72%, and 50.76%, respectively. Observations of the average number of pods with CPR showed that the lowest rate of attack (about 6%) was in BAL 209 and PT. Ladongi clones, with attack intensities of 20% and 18%, respectively; therefore, these clones were classified as resistant to CPR. Evaluation of the level of resistance to attack by CPB pests found two resistant clones, PT. Ladongi and Sulawesi 2, with light levels of attack on beans.
Vegetation structure of Sumatran Orangutan (Pongo abelii) habitat in North Sumatra, Indonesia Anita Zaitunah; SAMSURI; Satia Ras
Biodiversitas Journal of Biological Diversity Vol. 22 No. 2 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220215

Abstract

Abstract. Zaitunah A, Samsuri, Ras S. 2021. Vegetation structure of Sumatran Orangutan (Pongo abelii) habitat in North Sumatra, Indonesia. Biodiversitas 22: 635-641. Gunung Leuser National Park forest in the Bukit Lawang section is the habitat of Sumatran Orangutan (Pongo abelii). There have been reports of the orangutans visiting the village. As some tree species are required for their sustenance to provide nests and food, there is a need to study species diversity availability in their habitat. Thus, the aim of the research was to analyze the composition and structure of the area's vegetation-this was done for the forestand mixed plantation. The sampling for the measurement of tree parameters was conducted using the line strip method. The strips (width 50 m, length 250 m) were constituted by a sub-plot measuring for seedling, pole, sapling, and trees. Within the sampling area, 181 species were found. Species within Dipterocarpaceae showed higher important value index (IVI) compared to other species in all layers. Shorea parviflora and Shorea ovalis were among the species with higher IVI in all the layers. The presence of species of Dipterocarpaceae and other species preferred by orangutans will support their quality of life. Therefore, orangutans prefer staying in the forest to entering the garden. Thus, it is concluded that their entry into the mixed gardens is related to the garden's proximity to the forest. Conservation efforts are needed to minimize the conflict between man and orangutan in the surrounding area.
Short Communication: A new cyprinid fish Barilius cyanochlorus from Kerala, India Dr. Mathews Plamoottil; K. VINEETH
Biodiversitas Journal of Biological Diversity Vol. 21 No. 11 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211145

Abstract

Abstract. Plamoottil M, Vineeth K. 2020. Short Communication: A new cyprinid fish Barilius cyanochlorus from Kerala, India. Biodiversitas 21: 5389-5393. A new Barilius species is described from a small freshwater stream at Kasargod district of Kerala, India. It can be distinguished from its congeners in having a body with blackish-brown dorsal and upper laterals, greenish-yellow middle part and silvery lower lateral part, 8 vertical bands on mid-lateral region, each of these bands with 2 segments-lower blue part and upper green part, a large round blotch on the caudal base with similar color pattern, dorsal fin with basal 2/3 portion brown and distal 1/3 part orange-red, anal fin orange-red, pectoral fin pale reddish, 14-16 pre-dorsal scales and 37-39 lateral line scales. The new species is taxonomically analyzed, compared with its congeners, scientifically named and described. urn:lsid:zoobank.org:pub:F3B30158-CE71-496B-B8F4-B7645C2AD8B4  urn:lsid:zoobank.org:act:7763B3FE-6A97-447E-B718-2FB34807DFF9
Seed germination characteristics in different storage time of Gmelina arborea treated with ultrafine bubbles priming ISKANDAR Z. SIREGAR; KARIMA FAUZIAH MUHARAM; Y. ARIS PURWANTO; DEDE J. SUDRAJAT
Biodiversitas Journal of Biological Diversity Vol. 21 No. 10 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211013

Abstract

Abstract. Siregar IZ, Muharam KF, Purwanto YA, Sudrajat DJ. 2020. Seed germination characteristics in different storage time of Gmelina arborea treated with ultrafine bubbles priming. Biodiversitas 21: 4558-4564.  Gmelina (Gmelina arborea) seed collected from tropical Indonesian forest experience seed deterioration during storage which is relatively faster than the gmelina seeds originating from temperate regions, such as India and Myanmar. Various treatments have been made to improve the seed viability and vigor after storage through various invigoration techniques. However, the utilization of promising novel technology such as ultrafine bubbles (UFB) has not been evaluated yet. The objective of this study was to determine the effect of seed priming using UFB, polyethylene glycol (PEG), and gibberellic acid (GA3) on the viability and vigor of gmelina seeds that have been stored for one and two years. This study was conducted by employing Completely Randomized Design (CRD) using three replicates. The study showed priming treatment had significant effect and formed average germination capacity of 80% for the seed stored for 1 year.  On the other hand, the priming treatment using PEG-0.8 MPa was the best treatment for germination capacity of 74.67% on 2 years stored seeds. UFB had significant effect on germination capacity, germination rate, growth uniformity, and germination value. This result was expected due to reactive oxygen species (ROS) produced by micro-nano bubbles that could increase physiological activity of the seed cells.

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