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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Agro-morphological traits and harvest period assessment of winged bean (Psophocarpus tetragonolobus) genotypes for pods production Sayyidah Afridatul; MUHAMAD SYUKUR; TRIKOESOEMANINGTYAS TRIKOESOEMANINGTYAS; AWANG MAHARIJAYA
Biodiversitas Journal of Biological Diversity Vol. 22 No. 2 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220264

Abstract

Abstract. Ishthifaiyyah SA, Syukur M, Trikoesoemaningtyas, Maharijaya A. 2021. Agro-morphological traits and harvest period assessment of winged bean (Psophocarpus tetragonolobus) genotypes for pods production. Biodiversitas 22: 1069-1075. Winged bean (Psophocarpus tetragonolobus) is an underutilized crop in Indonesia. Winged bean varieties for pods productions not only must have high productivity and nutrient contents, but also have a long harvest period. This research aimed to evaluate agro-morphological traits and harvest period of eighth-generation winged bean genotypes. Twenty genotypes of winged beans were evaluated using randomized complete block design (RCB) with three replications in Bogor, Indonesia. Several qualitative and quantitative traits were evaluated from each genotype. The results showed that there were variations among winged bean genotypes which were based on qualitative traits as well as the color of stem, calyx, corolla, pod, and pod wings. Purple coloration in the calyx of P1 and H3U genotypes was known to correspond with the purple color in stem, corolla, pod, and pod wings. The highest yield among F8 genotypes was found in H2 (6.69 to ha-1), similar to P2. However, the longest harvest period among F8 genotypes was found in H1U-2 (78 days). This study revealed that harvest period had positive correlation with the leaflet size. Based on nutrient content, H3U and L2 were considered as the genotypes with the highest protein and fiber content respectively among F8 genotypes.
Molecular characterization of a farmer-preferred maize landrace population from a multiple-stress-prone subtropical lowland environment Fortunate Makore; Edmore Gasura; Caleb Souta; Upenyu Mazarura; John Derera; Meluleki Zikhali; Casper Kamutando; Cosmos Magorokosho; Shorai Dari
Biodiversitas Journal of Biological Diversity Vol. 22 No. 2 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220230

Abstract

Abstract. Makore F, Gasura E, Souta C, Mazamura U, Derera J, Zikhali M, Kamutando CN, Magorokosho C, Dari S. 2021. Molecular characterization of a farmer-preferred maize landrace population from a multiple-stress-prone subtropical lowland environment. Biodiversitas 22: 769-777.  The study was conducted to assess genetic diversity of 372 maize lines using 116 single nucleotide polymorphism (SNP) markers. Three hundred and forty-seven lines were S1 lines (coded J lines) from a local maize landrace population and twenty-five were the widely used standard lines. The number of alleles per marker ranged from two to four and the average was three alleles.  The average polymorphic information content (PIC) value of 0.405 indicates high genetic diversity for maize lines evaluated in this study. Population structure revealed three distinct sub-populations. Sub-population 1 contained two J lines; sub-population 2 contained five J lines and sub-population 3 contained the rest of the J lines and all the standard lines. Analysis of molecular variance (AMOVA) identified 22% variance among and 78% variance within the three subpopulations, indicating high gene exchange and low genetic differentiation. Hierarchical cluster analysis further divided the lines into nine subgroups placing some of the J lines into known heterotic groups', i.e.,  J30_3, J393_4, J393_3, and J393_1 in CIMMYT heterotic group B. Allelic variation observed can be a source of allele combination for breeding programs interested in widening their genetic base. The private alleles that were present in the J lines suggest availability of stress-tolerant genes that breeders can incorporate in new hybrids.
Morphometric analysis of Gorontalo (Indonesia) native chickens from six different regions ALFI SOPHIAN; ABINAWANTO ABINAWANTO; UPI CHAIRUN NISA; FADHILLAH FADHILLAH
Biodiversitas Journal of Biological Diversity Vol. 22 No. 4 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220420

Abstract

Abstract. Sophian A, Abinawanto, Nisa UC, Fadhillah. 2021. Morphometric analysis of Gorontalo (Indonesia) native chickens from six different regions. Biodiversitas 22: 1757-1763. Research on the diversity of Gorontalo native chickens based on morphometric analysis of body weight, leg length, head length, head length to beak and head width was conducted. This study was conducted to identify the diversity of native chickens in six regions spread across Gorontalo Province, Indonesia. The method used in conducting statistical analysis is the principal component analysis (PCA) method. This method was performed to identify which morphometric factors play a role in relationship analysis of Gorontalo native chickens. Based on statistical analysis, it was found that of the 5 variables used in this study, 3 variables had Measure of Sampling Adequacy (MSA) values > 0.5 ranged from 0.537 to 0.648, namely body weight, leg length, and head length. Meanwhile, the other 2 variables, namely Head to Beak Length and Head Width, have MSA values <0.5 with values of 0.313 and 0.316. This causes the other 2 variables to be used as a differentiating variable in analyzing the relationship between native chickens from six different regions scattered in the Gorontalo Province. The morphometric analysis of body weight means that the chickens sampled from Boalemo were morphometrically the largest in size, while the chickens sampled from Pohuwato were morphometrically the smallest. Chickens sampled from North Gorontalo, Bone Bolango, and Gorontalo City tended to be more uniform when compared to the chickens sampled from Pohuwato and Boalemo areas, while for Gorontalo District it was larger in size than Pohuwato, North Gorontalo, Bone Bolango, and Gorontalo City, but smaller than Boalemo.
Diversity and genetic parameter of chili pepper (Capsicum annuum) based on yield component in three location Tri Wahono Dyah Ayu Sayekti; MUHAMAD SYUKUR; SRI HENDRASTUTI HIDAYAT; AWANG MAHARIJAYA
Biodiversitas Journal of Biological Diversity Vol. 22 No. 2 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220236

Abstract

Abstract. Sayekti TWDA, Syukur M, Hidayat SH, Maharijaya A. 2021. Diversity and genetic parameter of chili pepper (Capsicum annuum) based on yield component in three locations. Biodiversitas 22: 823-829. With the increase in the use of chili, it is necessary to develop these commodities through plant breeding activities. Phenotypes are not only determined by genetics, but also by environmental factors and the GxE interactions, so all the factors need to be considered. The aims of this study were to evaluate the variability of ten elite breeding lines and three commercial varieties of chili pepper (Capsicum annuum L.) across three different environments. This experiment was conducted in three environments namely Bogor, Kolaka, and Palembang, from January until July 2019. Thirteen genotypes consisting of ten elite lines and three commercial chili pepper were used. This experiment was arranged in a randomized complete block design (RCBD) with three replications for each environment. To determine the effect of environment, Combined Analysis of Variance was carried out for all environments using PBSTAT-GE. The environment used in this experiment was lowland that varies between each other. The genotype with the fastest harvesting age relative in three environments was F7-145293-19-8-3-113-1. The highest number of fruits per plant was observed in genotype F9-160291-9-4-3-2-1-1-1 with 261 fruits per plant. The highest yield was observed in genotype F7-145174-9-7-1-5-3. From the clustering analysis, this population was grouped into five clusters. The heritability values for the 12 observed traits ranged between 22.68-69.97%, classified into high and moderate criteria.
The occurrence of Anisakis larvae on hairtail, Trichiurus lepturus caught from the Pangandaran Waters, West Java, Indonesia NISA QUROTA AYUN; LUTFI SEPTIANA DEWI; MURWANTOKO MURWANTOKO; Eko Setyobudi
Biodiversitas Journal of Biological Diversity Vol. 22 No. 3 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220339

Abstract

Abstract. Ayun NQ, Dewi LS, Murwantoko, Setyobudi E. 2021. The occurrence of Anisakis larvae on hairtail, Trichiurus lepturus caught from the Pangandaran Waters, West Java, Indonesia. Biodiversitas 22: 1378-1384. This study aimed to investigate the prevalence, mean intensity, and type of Anisakis larvae infecting hairtail (Trichiurus lepturus) caught at Pangandaran Waters, West Java, Indonesia. It was conducted using 869 samples sourced from local fishermen. The parameters measured were the total length and weight of each T. lepturus. Furthermore, parasitological examination was carried out to investigate the occurrence of Anisakis larvae in the fishes. The selected samples of Anisakis were identified through morphological and molecular analysis. The results showed that the larvae were found either free in the abdominal cavity of the fishes or coiled and attached to the serosal layer of the gastrointestinal tract, gonad, liver, and muscle. The results showed that the larvae were found either free in the abdominal cavity of the fishes or coiled and attached to the serosal layer of the gastrointestinal tract, gonad, liver, and muscle. It also showed that their prevalence in the T. lepturus was at a moderate level (45.5%), with the mean intensity at 4.4 larvae/fish. Moreover, the larvae were mostly in the abdominal cavity (89%), as only a few were found in another part of the fishes. Morphological identification showed that the type of Anisakis present was type I, as they were characterized by the presence of mucron and ventriculus without caecum. Molecular analysis was carried out by sequencing the ITS region, and it confirmed that the nematode was Anisakis typica, a non-zoonotic parasite. These parasites were not present in the edible portion/muscle of the fishes, and had a relatively moderate prevalence and low intensity. Therefore, their presence posed a relatively low risk to human health. However, due to consumption patterns and the increasing popularity of seafood, being served raw or undercooked, the incidence of anisakiasis may increase in the future. In the other hand, the presence of these larvae might be used as a biological indicator for several ecological studies.
Genetic diversity of indigenous catfish from Indonesia based on mitochondrial Cytochrome Oxidase Subunit II gene Vista Budiariati; Trini Susmiati; Siti Munawaroh; Rachmawati Cahyaningtyas Arie Putri; Rini Widayanti Widayanti
Biodiversitas Journal of Biological Diversity Vol. 22 No. 2 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220210

Abstract

Abstract. Budiariati V, Susmiati T, Waroh S, Putri RCA, Widayanti R. 2021. Genetic diversity of indigenous catfish from Indonesia based on mitochondrial Cytochrome Oxidase Subunit II gene. Biodiversitas 22: 593-600. Catfish is one of the most demanding fish in Indonesia and served in a variety of traditional culinary. Due to their identical morphology and close relation between species in the order of Siluriformes, it is quite tricky to distinguish the species. This can be a threat to develop catfish production in Indonesia since there is a wide variety of catfish species in this mega biodiversity country. The study aimed to analyze the genetic diversity of Indonesian indigenous catfish especially those known as Baung fish by local people based on COII gene. The study also aimed to determine the phylogenetic relationship between the samples and compare them with the GenBank data. A total of 24 samples used in this study from 8 different rivers from 3 different islands and two samples were collected from coastal areas. The study results showed that there is genetic diversity of the Indonesian indigenous catfish based on COII gene. The sequences among 24 samples showed that from 691 nucleotides of COII gene, there were very subtle nucleotides differences of samples that originated from Bojonegoro, Magelang, and samples collected from Baru Beach, Yogyakarta. Based on COII amino acid sequences, 6 polymorphic amino acid sites were on-site number 64, 115, 123, 129, 144, and 165. The samples encoded LLB1 and LPB1 from Baru Beach, Yogyakarta, showed highest different amino acids in the six sites. Samples from the river of Central Java, Sumatra, and Kalimantan belonged to Bagridae family and consist of two different species Hemibagrus sp. and Mystus sp while samples from East Java belonged to Pangasiidae family. The Samples from coastal belonged to Ariidae family.
Semi-natural regeneration and conservation in agroforestry system models on small-scale farmers Priyono Suryanto; Ronggo Sadono; AISYA YOHANIFA; MUHAMMAD HABIB WIDYAWAN; Taufan Alam
Biodiversitas Journal of Biological Diversity Vol. 22 No. 2 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220240

Abstract

Abstract. Suryanto P, Sadono R, Yohanifa A, Widyawan MH, Alam T. 2021. Semi-natural regeneration and conservation in agroforestry system models on small-scale farmers. Biodiversitas 22: 858-865. The regeneration capacity can provide an overview of the abundance of species so that it can be used to determine the potential and opportunities for the sustainability of agroforestry systems. The purpose of this study was to determine the capacity of semi-natural regeneration in agroforestry system models for small-scale farmers. The study was carried out in Banaran Sub-district, Playen District, Gunungkidul Regency, Special Province of Yogyakarta, Indonesia. The observation was conducted on plant diversity, floristic composition, and agroforestry contribution. The results showed that the mixed cropping (MC) model had a higher total of individuals and diversity compared to the trees along with border (TAB) model in the sapling and seedling level. The MC model was relatively shorter to the waiting time of harvesting compared to the TAB model. The MC models weakness was the relatively high competition and the lack of opportunities to growing annual crops. The TAB model had an advantage in developing annual crops in an agroforestry system, while longer in waiting time for harvesting perennial crops. This study recommends annual pruning in the MC model for optimal stand growth, while in the TAB model, it is the enrichment planting in sapling and seedling levels.
Assessing the sustainability status of mangrove forest ecosystem management by coastal community in Jaring Halus Village, North Sumatra, Indonesia EDY SAHPUTRA; R. HAMDANI HARAHAP; HESTI WAHYUNINGSIH; BUDI UTOMO
Biodiversitas Journal of Biological Diversity Vol. 23 No. 1 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230101

Abstract

Abstract. Sahputra E, Harahap RH, Wahyuningsih H, Utomo B. 2021. Assessing the sustainability status of mangrove forest ecosystem management by coastal community in Jaring Halus Village, North Sumatra, Indonesia. Biodiversitas 22: 1-9. Mangrove forest ecosystems provide various important ecological (physical and protection) and economic services. Mangrove forest needs to be sustainably managed to ensure their functions and benefits are available in perpetuity. Still, issues regarding sustainable management of mangrove forests are rarely discussed, especially in Indonesia. This research aims: (i) to gain the fundamental understanding of the level of sustainable mangrove management by determining indicator attributes that can be categorized as leverage factors; ii) obtain the perceptions of coastal communities in mangrove forest management; and iii) investigate the compliance of coastal communities in mangrove forest management. Data were obtained through a series of interviews, field observation and focused group discussion (FGD) and questionnaires conducted from January 2018 to March 2019 in Jaring Halus Village, Secanggang Subdistrict, Langkat District, North Sumatra, Indonesia. Data were analyzed using multidimensional scaling (MDS). The results showed that the status of mangrove forest management in Jaring Halus Village was categorized as moderately sustainable with a score of 65.83%. The majority of the coastal community (96% of respondents) perceived and understood the value of protecting the mangrove ecosystem, which provided physical (ecological), economic, and social functions. The community's understanding and knowledge of the importance of mangrove forests is due to the high level of dependency on their main livelihood as fishermen. Around 97% of the respondents held strong obedience to the mangrove forest management in Jaring Halus Village, which could be attributed to local wisdom related to natural resource management.
Normalized Difference Vegetation Index (NDVI) analysis for vegetation cover in Leuser Ecosystem area, Sumatra, Indonesia Adisti Permatasari Putri Hartoyo; ARZYANA SUNKAR; RAHMATULLOH RAMADANI; SYAHLAN FALUTHI; SYAFITRI HIDAYATI
Biodiversitas Journal of Biological Diversity Vol. 22 No. 3 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220311

Abstract

Abstract. Hartoyo APP, Sunkar A, Ramadani R, Faluthi S, Hidayati S. 2021. Normalized Difference Vegetation Index (NDVI) analysis for vegetation cover in Leuser Ecosystem area, Sumatra, Indonesia. Biodiversitas 22: 1160-1171. About 2 Mha of 24.3 Mha degraded area in Indonesia is inside conservation area. The Leuser Ecosystem Area (LEA) is the largest conservation area in Malesian forest that plays essential role in biodiversity and ecosystem services conservation efforts. It is the last habitat on earth where Sumatran tigers, elephants, orangutans, and rhinoceros are found together. However, LEA faces many threats, such as infrastructure development, and industrial palm oil plantation. Additionally, vegetation cover data as an approach to monitor forest cover changes in LEA is still lacking and baseline data regarding composition, structure as well as vegetation diversity in LEA is very limited. The objectives of this study were to analyze vegetation cover using Normalized Difference Vegetation Index (NDVI) in LEA and its relation to agroforestry structure, composition and diversity in Agusen Village, Gayo Lues District and Alur Durin Village, East Aceh District, Aceh Province belonging to LEA. Based on the NDVI analysis, the largest area in LEA belonged to class 5, meaning that the most area in LEA was dominated by high dense vegetation (1,870,116.40 ha). The average accuracy and standard error of NDVI analysis were 83.33% and 2.62. LEA is an effective buffer for maintaining forest ecosystems and increasing the local communities' welfare through agroforestry system. Agroforestry structures in agroforestry practices, both in Agusen Village and Alur Durin Village did not reflect reverse-J curve, meaning that enrichment planting for increasing numbers of individual and species was necessary. Management of agroforestry system depends on the landowners or managers and their selection of shade tree species with high economic value with market demand such as C. arabica, T. cacao with A. moluccanus, L. leucocephala, H. brasiliensis, D. zibethinus, etc. Trees that produce non-timber products are also an alternative way for conservation strategy and sustainable utilization.
Comparison of growth pattern, condition factor, gonadosomatic index of Manggabai (Glosogobius giuris) and Payangka (Ophieleotris aporos) in Limboto Lake, Gorontalo, Indonesia Hasim Hasim; Jali Tuheteru; Dewi Nuryanti Fazrin
Biodiversitas Journal of Biological Diversity Vol. 22 No. 6 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220646

Abstract

Abstract. Hasim, Tuheteru J, Fazrin DN. 2021. Comparison of growth pattern, condition factor, gonadosomatic index of Manggabai (Glosogobius giuris) and Payangka (Ophieleotris aporos) in Limboto Lake, Gorontalo, Indonesia. Biodiversitas 22: 3388-3393. Manggabai and Payangka are endangered native fishes in Limboto Lake due to continuous degradation in the lake. In addition, silting lake along with its area that continues to narrow can threaten the life of both fishes although the government has stipulated restoration of Limboto Lake as the ecosystem of the fishes. However, the current information on the fishes remains considerably limited in terms of making it as a conservation strategy. This study aims to analyze the relationship between the total length and weight of Payangka and Manggabai. Furthermore, it analyzes the condition factors and the gonadosomatic index of the two fishes. The research method integrates survey and laboratory techniques. The fishes are collected by using trap made of bamboo and motorcycle tires that are installed for three days and the catches are 60 fishes including 30 Manggabai and 30 Payangka. Then the total length and weight of the fish and their gonad weight were measured. Data analysis used mathematical formulation of the relationship between total weight and length, condition factor, and gonadosomatic index. The result of the analysis shows that the growth pattern of the Manggabai was negative allometric whereas the Payangka was positive allometric. The condition factor for both types is generally less than 1.7. The gonadosomatic index of Manggabai ranges from 4.10-20.00% and Payangka ranges from 0.05-1.98%. These conditions indicate that differences in growth pattern, condition factor, and gonadosomatic index are different forms of response to environmental conditions and in the spawning season of both types of fish.

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