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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
 87   88   89   90   91 
Yield-related traits characterization of local upland rice cultivars originated from East and North Kalimantan, Indonesia NUR HASANAH; SADARUDDIN SADARUDDIN; WIDI SUNARYO
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180339

Abstract

Nurhasanah, Sadaruddin, Sunaryo W. 2017. Yield-related traits characterization of local upland rice cultivars originated from East and North Kalimantan. Biodiversitas 18: 1165-1172. In East and North Kalimantan, rice genetic diversities were very high. Most of the local rice cultivars existed in East and North Kalimantan, are upland rice cultivars. Unfortunately, most of those cultivars have not been optimally studied and characterized for rice breeding purposes. In this study, 146 upland rice cultivars originated from East and North Kalimantan were grown in the field which was further characterized their yield parameters. Tillering capacity, productive tiller, the size and structure of panicle as well as grain characteristics were characterized in the population to select potential superior cultivars. The results showed that the phenotypic variation of tillering capacity in those local upland rice was very high. Tiller number was varied from 2 to 66 tillers, with an average of 20.92 tillers and 25 cultivars had more than 30 tillers. Large range of productive tiller was also observed in the population, ranging from 14.8 to 100% of their tillering capacity, but most of the cultivars (80%) had more than 70% productive tiller. In addition, 9 cultivars had 100% productive tillers, in which all of the tillers generated panicles. Highly significant positive correlation (0.802**) was observed between productive tiller and tillering capacity. The panicle length of the local upland rice cultivars was in range from 14.5 cm to 43.5 cm, with most of the panicle size population clustered in length of 20-30 cm. In addition, 8.2% cultivars had a dense/heavy category, while 22.6% were sparse, and the rest of 70.2% had no panicle secondary branch. Variation of grain characteristics of local upland rice in the East and North Kalimantan including grain weight, grain length and width, as well as length-to-width ratio was also discussed in this study.
Morphology and assessment of genetic structure and diversity of Dionysia revoluta (Primulaceae) in Iran SIMIN YOUNESI; MOSTAFA ASSADI; TAHER NEJADSATTARI; IRAJ MEHREGAN
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180340

Abstract

Younesi S, Assadi M, Nejadsattari T, Mehregan I. 2017. Morphology and assessment of genetic structure and diversity of Dionysia revoluta (Primulaceae) in Iran. Biodiversitas 18: 1173-1178. Dionysia revoluta Boiss. (Primulaceae), the most widespread species of the genus in Zagros Mountains of western Iran, is studied morphologically and genetically. Clustering analysis of morphological characters did not match the biogeography of the populations. Cluster analysis separated two subspieces of D. revoluta i.e. subsp. revoluta and subsp. canescens (Boiss.) Wendelbo. Factor analysis (FA) showed that petal size and length of the corolla tube were the only two factors with the slightest variation. Amplified Fragment Length Polymorphism (AFLP) fingerprint technique was used to evaluate the genetic structure and diversity among 14 populations of D. revoluta. The results of AFLP analysis of D. revoluta individuals showed that 67% of the total diversity was that of within-population diversity, 17% was among-population diversity and 16% was among-region diversity. AFLP data suggest that amount of genetic variation of populations growing in localities with other Dionysia species in sympatry is higher than those populations growing allopatric. This implies the hybridization as a possible important factor in the evolution of the group. It was also concluded that hybridization would result in higher genetic diversity within those populations of D. revulota occur with other species in sympatry.
Species diversity and population distribution of arboreal mammals in Kemuning Forest, Temanggung, Central Java, Indonesia AGNES AUDINA KRISANTI; TETRI WIDIYANI; MUHAMMAD ALI IMRON
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180342

Abstract

Krisanti AA, Widiyani T, Imron MA. 2017. Species diversity and population distribution of arboreal mammals in Kemuning Forest, Temanggung, Central Java, Indonesia. Biodiversitas 18: 1190-1195. Arboreal mammals which spent their life on the trees have significant roles for ecosystem balance and sustainability of forest ecosystem. This research aimed to reveal the diversity, population distribution, and the habitat used by arboreal mammals in Kemuning Forest of Bejen, Temanggung, Central Java, Indonesia. We conducted observation on the presence of arboreal mammals during four weeks started from April to July 2016. The observation was done within various times a day depends on the weather. 30 strips transect (ST) with 200m in length were established following the existing walking path for species identification. Point-quarter samplings (PQS) were used at every 50m of the track length for measuring diversity, density, and determining the dominant vegetation. There were 137 individuals of arboreal mammals detected and classified in 6 species, i.e., Callosciurus notatus, Ratufa bicolor, Galeopterus variegatus, Macaca fascicularis, Trachypithecus auratus, and Nycteris javanica. The largest population was M. fascicularis while the smallest was G. variegatus. There were 28 species of identified trees. Animals were observed in 22 tracks while the other six tracks were out of detected animals, so the relative frequency of animal was 80%. Diversity indices (H’) of the animal were 1.342, whereas the vegetation diversity indices were 2.795. Dominant vegetation species were Ficus macrophylla (36%). The arboreal mammals were distributed in a clumped pattern. We concluded that Kemuning Forest had the potential to be the suitable habitat for arboreal mammals with better managements.
Bycatch of sharks, marine mammals and seabirds in Indonesian Tuna Longline Fishery IMAM MUSTHOFA ZAINUDIN; MUFTI PETALA PATRIA; PRIYANTO RAHARDJO; YASMAN YASMAN; DWI ARIYOGA GAUTAMA; WAHYU TEGUH PRAWIRA
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180341

Abstract

Zainudin IM, Patria MP, Rahardjo P, Yasman, Gautama DA, Prawira WT. 2017. Bycatch of sharks, marine mammals and seabirds in Indonesian Tuna Longline Fishery. Biodiversitas 18: 1179-1189. Bycatch in longline fishery is recorded to be one of the major factors defining the declined populations of endangered marine species worldwide. This research aimed to identify bycatch level of sharks, marine mammals and seabirds as well as to pinpoint the mitigation options in Indonesian tuna longline fishery. In this study, a total of 8,564,858 hooks were observed from 5,622 gear settings in Indonesian tuna longline fishery based in two major fishing ports, namely Bitung Fishing Port-North Sulawesi and Benoa Port-Bali from May 2006 to June 2014. The results suggest that the best hook rate per thousand hooks in Indonesian tuna longline fisheries for shark bycatch was 0.2446, followed by 0.0030 for seabird bycatch, 0.0021 for dolphin bycatch and 0.0009 for whale bycatch. Seabirds largely acquired in the dead condition while the other species were found still alive (sharks and marine mammals). Bycatch of seabirds only occured in the vessels based in Benoa Bali, and the correlation value (R2) of sharks and seabirds caught at night time was low while for marine mammals was very strong. Deep setting system of fishing gears and night setting also proved to be more effective to reduce bycatch of those critical marine species.
How trust influence social capital to support collective action in agroforestry development? ROMMY QURNIATI; INDRA GUMAY FEBRYANO; DINI ZULFIANI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180344

Abstract

Qurniati R, Febryano IG, Zulfiani D. 2017. How trust influence social capital to support collective action in agroforestry development?. Biodiversitas 18: 1201-1206. Trust is an important factor for strengthening social capital. Trust in forest community is achieved through collective action in small scale agroforestry. It was challenging process regards the low on social capital in communities. This study intended to analyse and explain how trust influences social capital in encouraging collective action in agroforestry development. The study conducted in Sidodadi and Sumur Kumbang Lampung Province, from October-December 2016. The area was selected based on disparities of sea level of villages. The data collected through in-depth interviews with several members of farmer group who responsible for agroforestry. The research found that trust between farmer group member remains high. However, trust as a source of social capital was not supported collective action since farmer group institution is weak. Therefore, to support agroforestry development, social capital should be increased through the development of good networks (bridging) to reach collective goal i.e. community welfare and sustainable forest management
Post fire succession in Tegal Panjang Grassland, Mount Papandayan, West Java, Indonesia ENDAH SULISTYAWATI; SYLVANITA FITRIANA
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180347

Abstract

Sulistyawati E, Fitriana S. 2017. Post fire succession in Tegal Panjang Grassland, Mount Papandayan, West Java, Indonesia. Biodiversitas 18: 1226-1233. Tegal Panjang is a grassland area surrounded by rainforest consisting of vegetation patches formed by fires occurring at different times. This condition presents a unique environmental setting allowing the study of vegetation succession after fire disturbance. The objectives of this research were (i) to determine the pattern of vegetative development and changes in environment conditions in post-fire grassland on five sites having different ages (6 months, 1 year, 2 years, 5 years and more than 10 year) and (ii) to examine whether post-fire succession in grassland allows the establishment of tree seedling. Measurements were conducted for vegetation composition, aboveground biomass and edaphic factors (soil pH, water content, bulk density and organic content) in each site. The pattern of vegetation development in the course of succession in Tegal Panjang grassland is marked by increasing biomass and height of the vegetation as the stand ages but with a slow rate of species diversification. No tree saplings were found in all sites despite its close distance to the forest. Recruitment limitation associated with repeated fire disturbance may explain the absence of tree saplings in the grassland.
Diversity of plant species in paddy ecosystem in West Sumatra, Indonesia ENIE TAURUSLINA AMARULLAH; TRIZELIA TRIZELIA; YAHERWANDI YAHERWANDI; HASMIANDY HAMID
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180346

Abstract

Tauruslina EA, Trizelia, Yaherwandi, Hamid H. 2017. Diversity of plant species in paddy ecosystem in West Sumatra. Biodiversitas 18: 1218-1225. Community is a group of living things which have adjusted and inhabited a natural habitat. Characteristics of the community in an environment are its diversity. The diversity of the plants is a plant species that occupy an ecosystem. The research was aimed at determining species diversity, the dominance of plant species and summed dominance ratio (SDR) in paddy ecosystem. The plant samples were taken from the location of endemic areas of brown plant hopper in Tanjung Mutiara Subdistrict, Agam District West Sumatra. Sampling was done by using two methods, (i) survey methods with direct data collection; (ii) squares method, observation of sample plots in the field. The level of diversity of plant species was analyzed using diversity index of Shannon-Wiener (H’). Plant species dominance was analyzed using dominance index (C). The results showed that index value of Shannon-Wienner ranged 1.00 – 1.73, which indicated that the category of diversity level of plants was medium. Dominance index ranged 0.03 - 0.08 which meant there were a dominant species among the plants in the study areas. The highest SDR in the ecosystem type III were Cyperus rotundus (40.87%) and Borreria laevis (37.43%), in the type I was C. rotundus (34.90%) and in type II was Portulaca oleracea (20.08%). The dominant plant species found in the type I were C. rotundus, Eleusine indica, Borreria laevis, in type II were P. oleracea, C. rotundus, Amaranthus spinosus and in type III were C. rotundus, B. laevis, and A. spinosus.
Short Communication: Traditional medicinal formulation: Obat pahit from Lingga Malay Ethnic in Riau Archipelago, Indonesia FITMAWATI FITMAWATI; NERY SOFIYANTI; RODESIA MUSTIKA ROZA; ISNAINI ISNAINI; HIDAYATUL HAZIMI; YULISA RESTI IRAWAN; DHANIEL RIDHO WINATA; AWAL PRICHATIN KUSUMO DEWI
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180343

Abstract

Fitmawati, Sofiyanti N, Roza RM, Isnaini, Hazimi H, Irawan YS, Winata DR, Dewi APK. 2017. Traditional medicinal formulation: Obat pahit from Lingga Malay Ethnic in Riau Archipelago, Indonesia. Biodiversitas 18: 1196-1200. Lingga Malay Ethnic is the native ethnicity in the Lingga District, Riau Archipelago, Indonesia. This ethnic still holds strong beliefs of their ancestors, such as the use of medicinal plants. One ingredient that is still used today is obat pahit as a body fitness keeper. The aim of this research was to inventory the kinds of medicinal plants used by Lingga Malay ethnicity in obat pahit potions. This research was conducted using survey and observation methods on the packaging of obat pahit. Interviews were held on Traditional Medicine Practitioners (TMP) of 5 (five) people TMPs using a questionnaire form. The research results during the interview and observation of TMPs in the packaging of obat pahit showed the differences in number and kinds of plants of each TMP. The interview results which were obtained 2 plant species were listed from Kalan TMP; SP4 TMP is about 12 species of plants; Linau TMP is 14 species of plants; Resun TMP is 7 species of plants; and Musai TMP is 14 species of plants. The dominant medicinal plants that are used on this study were Bauhinia semibifida, Cnestis sp. and Cnestis palala.
Traditional plants in forest gardens of West Kutai, Indonesia: Production and financial sustainability MARTEN APUY; ABUBAKAR M. LAHJIE; B.D.A.S. SIMARANGKIR; YOSEP RUSLIM; ROCHADI KRISTININGRUM
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180345

Abstract

Apuy M, Lahjie AM, Simarangkir B.D.A.S, Ruslim Y, Kristiningrum R. 2017. Traditional plants in forest gardens of West Kutai, Indonesia: Production and financial sustainability. Biodiversitas 18: 1207-1217. Our research on the first generation forest gardens (munaan) in West Kutai District, Indonesia, aimed (i) investigating the cultivation and the financial profit of various plants grown by the residents in the first generation forest gardens (munaan); (ii) finding out the financial feasibility level of the first generation forest gardens (munaan) cultivation by the residents. The subject of this research included farmers or people who cultivated the old/ first generation forest gardens as well as several plant commodities namely durian (Durio zibethinus), rambutan (Nephelium lappaceum), cempedak (Artocarpus champeden), langsat (Lansium domesticum), ihau (Dimocarpus didyma) (i.e. native Borneo longan), meranti (Shorea sp.) and kapur (Dryobalanops aromatica) trees. Five villages/kampongs were sampled, with each plot sized 20 m x 20 m. Biomass analysis stocks growth of meranti and kapur trees are using volume formula. While the fruit production was calculated by weighing the weight of the fruit. In order to find out the relationships among variables, a polynomial regression equation was employed to obtain the regression coefficient of determination (R2). The bioeconomic analysis feasibility was done by using Pay Back Period (PP), Net Present Value (NPV), Net B/C ratio and IRR. The amount of revenue level for each variant of fruit (i.e. durian, rambutan, langsat, ihau, and cempedak was different depending on the volume of fruit production and the selling price. The total amount of revenue from the cultivation of kapur and meranti trees depended on the total volume of timber, which was based on their diameter and basal area multiplied by the price of the timber itself. These findings imply that the cultivation of first generation forest gardens (munaan) was feasible for the community. The calculated values of Pay Back Period, Net Present Value (NPV), Net B/C and IRR at the discount level factor of 5% were 19.3 years; IDR 30.004.000, 1.58 and 8.8% respectively.
Short Communication: Rapid and accurate genetic authentication of Penthorum chinense by improved RAPD-derived species-specific SCAR markers ZHIQIANG MEI; MD. ASADUZZAMAN KHAN; XIANQIN ZHANG; JUNJIANG FU
Biodiversitas Journal of Biological Diversity Vol. 18 No. 3 (2017)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d180349

Abstract

Mei Z, Khan MA, Zhang X, Fu J. 2017. Short Communication: Rapid and accurate genetic authentication of Penthorum chinense by improved RAPD-derived species-specific SCAR markers. Biodiversitas 18: 1243-1249. For the genetic identification and authentication of living organisms, development of Sequence-Characterized Amplified Region (SCAR) markers from Random Amplified Polymorphic DNA (RAPD) fragments is a valuable molecular approach. By using SCAR markers, molecular analysis is simplified to a Polymerase Chain Reaction (PCR) analysis using PCR primers designed from specific sequences of the RAPD amplicons. In this study, RAPD fragments from improved RAPD amplification of a perennial herb Penthorum chinense Pursh from China were cloned into a T-vector, and positive clones were identified by PCR amplification, and sequenced with the Sanger sequencing method for the SCAR marker development. Five SCAR markers were developed that were very specific to P. chinense, and deposited in GenBank (accession numbers: KX671029, KX671030, KX671031, KX671032 and KX671033). BLAST searches of these five nucleotide sequences in the GenBank database showed no identity with markers from other species. This study was developing five specific SCAR markers, has enabled reliable genetic identification of the herbal plant species Penthorum chinense Pursh, useful for authenticating future samples of this important medicinal herb.

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