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INDONESIA
HAYATI Journal of Biosciences
Published by Institut Pertanian Bogor
ISSN : 19783019     EISSN : 20864094     DOI : -
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences
HAYATI Journal of Biosciences (HAYATI J Biosci) publishes articles and short communication in tropical bioscience fields such as development, biotechnology, biodiversity and environmental issues. HAYATI J Biosci covers wide range of all life forms topics including virus, microbes, fungi, plants, animal and human. HAYATI J Biosci has been also indexed/registered in Crossref, DOAJ, CABI, EBSCO, Agricola and ProQuest.
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Articles 15 Documents
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Search results for , issue "Vol. 29 No. 5 (2022): September 2022" : 15 Documents clear
Diversity and Potential Carbon Services of In-Situ Conservation Reserve in Gunung Sepuluh Timur Forest at Balikpapan, East Kalimantan Adonis Muzanni; Tri Edhi Budhi Soesilo; Dwi Nowo Martono; Udi Syahnoedi Hamzah; Andri Wibowo; David Febraldo; Fatma Lestari
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.632-642

Abstract

Establishing an in-situ conservation reserve is one of the strategic approaches to conserving an ecosystem and protecting it from immediate threats, including deforestation and land-use conversion. Kalimantan is one of the islands in Indonesia that is currently threatened by deforestation. To protect East Kalimantan diversity, mainly in Balikpapan, an in-situ conservation reserve has been established in Gunung Sepuluh Timur (GST) forest. In contrast, the information on tree diversity and how the presence of tree community within the forest can benefit the ecosystem are still limited. This research aims to assess the potential benefits and carbon storage of the GST conservation forest. The assessment method applied tree, pole, and sapling surveys combined with forest cover analysis using GIS and NDVI (Normalized Difference Vegetation Index) approaches. The GST contained 56 tree species, 25 pole species, and 16 sapling species. Diversity (H’) at tree stages was the highest (H’ = 0.759; 95%CI: 0.64-0.88) and H’ at sapling stages was the lowest (H’ = 0.719; 95%CI: 0.51-0.92). The carbon service potential of GST forest was 87.04 t C/ha on average. It was estimated that the economic benefits of GST in sequestering carbon based on the compliance market rate were equal to US$ 189,758/year.
Molecular Characterization and Pathogenesis of Newcastle Disease Virus Isolated from Brontok Eagle in West Java, Indonesia Liza Angeliya; Yuli Purwandari Kristianingrum; Widya Asmara; Michael Haryadi Wibowo
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.648-657

Abstract

Newcastle disease (ND) is a contagious disease in poultry and numerous birds of various ages. Eagle is considered a potential reservoir for ND transmission as a wild bird. This research was conducted to molecularly characterize Newcastle disease virus (NDV) isolated from ND cases in Brontok Eagle and analyze the pathogenesis in chicken embryos. qRT-PCR was conducted as confirmation of NDV without mixing Avian Influenza (AI). Sequencing the fusion (F) and haemagglutinin-neuraminidase (HN) genes from the three NDVs was performed with a specific primer. Amino acid sequence compared with other NDV from Genbank. Pathogenicity, genetic variation, distance, and phylogenetic studies were analyzed using bioinformatics software (MEGA-X). This study analyzed pathogenesis based on lesions and distribution of viral antigens in chicken embryos infected with NDV. Observations were based on tissue lesions with HE and IHC staining. NDV isolated from three Brontok Eagles is classified as velogenic strain, virulent NDV (KRQKRF), and belonging to Genotype VII subgenotype VII.2. The NDV was detected in various organ lesions, more severe in the pulmo, trachea, proventriculus, and intestine of chicken embryos. That is still similar to the previous case reports in the field. These results show that NDV, which infected Brontok Eagle, has similar molecular characteristics and pathogenesis in chickens. These cases could be a threat to the poultry industry. Further research, surveillance, and monitoring of wild birds are needed to obtain more NDV epidemiological information in wild birds.
Performance of Transgenic Chrysanthemum Harbouring Wasabi Defensin Gene for White Rust Disease Resistance
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.621-631

Abstract

This study was intended to obtain white rust (Puccinia horiana) disease resistance Chrysanthemum transformed with wasabi defensin gene through mediation of Agrobacterium tumefaciens from three explant sources, i.e., leaf, lateral shoot bud, and internode. Observations were made on transformation efficiency, PCR analysis, in vitro and ex vitro disease resistance tests. Results showed that efficiency of transgenic callus and shoot regeneration was found both highest from lateral shoot buds (57.5% and 50.0%, respectively). PCR analysis showed that three putative transgenic plantlets from lateral shoot buds and one from leaf explant were putative transgenic carrying the wasabi, hpt, and nptII genes. Rooting test showed that the highest number of rooted plants was found in treatment of hygromycin (Hg) 25 mg L-1 (81%) and lowest was in treatment combination of kanamycin (Km) 50 mg L-1 + Hg 25 mg L-1 (25%). In vitro disease resistance test with sorus inoculation of P. horiana, directly on the leaves, resulted in 20 resistant plants out of 30 putative transgenic plants (66.67%). Ex vitro testing on adult plants of the same samples in a confined closed greenhouse (CGH) resulted in average of 80% transgenic Chrysanthemum plants were resistant, whereas in control plants caused white rust disease symptom.
Effect of Chronic Toxicity Studies of Sappan Wood Extract on The Kupffer Cells Number in Rats (Rattus novergicus) Erick Khristian; Ratu Safitri; Mohammad Ghozali; Muhammad Hasan Bashari
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.695-700

Abstract

Sappan wood (Caesalpinia sappan L.) is a plant used by the community to mix drinking. The antioxidant index of Sappan wood extract has a higher value than commercial antioxidants to counteract oxidative free radicals and improve the body's defense system. The use of Sappan wood drinking in society is often used in daily so it is necessary to do a chronic toxicity test to observe the response to prolonged use of the system in the body. Kupffer cells are an important part of the innate immune system, acting as “scavengers” and phagocytes. A study that aims to see the chronic toxicity studies of the ethanolic extract of Sappan wood on the number of Kuffer cells in the liver has been carried out on 60 Wistar rats divided into 12 groups. The group was the negative control group, doses 100 mg/kgBW, 200 mg/kgBW, 300 mg/kgBW, 400 mg/kgBW and 500 mg/kgBW of extract Sappan wood which were divided into male and female groups. Each group was given ethanol extract of Sappan wood for one year orally. The results showed a significant increase in Kupffer cells in the female group at a dose of 100 mg/kgBW and the male group at 200 mg/kgBW with significant values, respectively, p<0.001 p = 0.004.
Genetic Diversity of the Endangered Endemic Anoa (Bubalus spp): Implication for Conservation Dwi Sendi Priyono; Dedy Duryadi Solihin; Achmad Farajallah; Bambang Purwantara
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.586-596

Abstract

Anoa is an endemic ungulate in Sulawesi and its status now is endangered because the population continues to decline. Conservation genetics is one of the crucial issues in the anoa conservation strategy and action plan 2013-2022 document, but this genetic data is not yet available. To investigate and provide valuable information for conservation genetics measures, thirteen polymorphic microsatellites were used to analyze 20 adult anoa. Anoa has relatively low genetic diversity within populations (HO = 0.58), and high genetic differentiation among populations (FST = 0157). Although the anoa population has a bottleneck signal (T.P.M: 0.019; P0.05), the bottleneck simulation results show that the loss of genetic diversity is being slow over the next 100 years (9.5%). We provide some recommendations for conservation genetics based on the findings in this paper, including monitoring and genetically mapping for other anoa populations due to bottleneck signals, establishing the founder of the ex-situ population by examining their genetic diversity status, maintaining and increasing the number of individuals in the ex-situ population to genetically safe population size, and managing anoa populations by avoiding inbreeding. In-situ and ex-situ conservation programs should be combined to maintain the genetic diversity of anoa.
Endophytic Fungi Isolated from the Mangrove Species Rhizophora apiculata and Their Efficacy as Herbicides Za’aziza Ridha Julia; Nampiah Sukarno; Sintho Wahyuning Ardie; Irmanida Batubara; Soekisman Tjitrosoedirdjo; Mashuri Waite
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.605-620

Abstract

Endophytic fungi play an important role on mangrove growth and development, however research on the endophytic fungi of the mangrove Rhizophora apiculata is limited. The endophytic fungi produce diverse bioactive compounds involved in the mangrove’s adaptation to varied biotic and abiotic stresses and could have applied uses in agriculture or medicine. The purpose of this research was to isolate endophytic fungi of Rhizophora apiculata mangrove and to study their activity as herbicides on the weed Gomphrena globosa. The fungi were isolated using the surface sterilization method and identified based on morphological characteristics and molecular characteristics using ITS regions of rDNA. Herbicidal activity of the fungal filtrates extracted by ethyl acetate were tested on seed germination and seedling growth of G. globosa. Five fungal isolates were obtained, namely Penicillium citrinum, Diaporthe eucalyptorum, Diaporthe musigena, Colletotrichum queenslandicum, and Diaporthe tectonae. All isolates were able to grow on PDA medium containing 0, 25, 50, 75, and 100 (% v/v) seawater concentrations, but the growth rate varied by species and seawater concentration. In general, all five isolates showed herbicidal activity by delaying seed germination and reducing shoot and root growth. P. citrinum showed the highest herbicidal activity compared to the other isolates. Analysis using Gas Chromatography-Mass Spectrometry of the crude extract of P. citrinum filtrate identified 7 main compounds: 3-Methoxy-2-methyl-cyclohex-2-enone, Cyclohexane-carbohexaldehyde, 6-methyl-3-(1-methylethyl)-2-oxo, Cyclopropane carboxylic acid, 1-(2-propenyl)-1,1-dimethylethyl ester, 2-Hydroxy-4-isopropyl-7-methoxytropone, Beta-Asarone, Oxane, 4-(2-amino-1-hydroxyethyl)-4-(3,4-dimethoxyphenyl)-, and Diisooctyl-phthalate. These compounds should be studied further to determine which ones are responsible for the herbicidal activity.
Volatile Bioactive Compounds from Lasiodiplodia pseudotheobromae IBRL OS-64, an Endophytic Fungus Residing in the Leaf of Ocimum sanctum Mohd Taufiq Mat Jalil; Darah Ibrahim
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.570-585

Abstract

Endophytic fungi are known as potential novel compound producers with promising antimicrobial activities. Hence, the present study aimed to investigate the possible bioactive compounds present in the ethyl acetate extract of Lasiodiplodia pseudotheobromae IBRL OS-64. The ethyl acetate extract exhibited significant antibacterial activity against both Gram-positive and Gram-negative bacteria in disc diffusion assay. Thin-layer chromatography (TLC) was performed with chloroform, acetone and ethyl acetate (1:2:1, respectively) used as a solvent system and nine spots with diverse polarities were obtained. The TLC chromatogram with the active spot was localized with bioautography assay and the finding revealed that the dark spot with an Rf value of 0.5882 showed good antibacterial activity against all test bacteria. The fraction F5 exhibited promising antibacterial activity upon partial purification of dark spot via column chromatography and the GC-MS analysis of fraction F5 resulted in the detection of a major compound, 2-Benzenedicarboxylic acid, mono (2-ethylhexyl) ester with 90% matching factor. Thus, this compound may greatly contribute to the antibacterial activity of the fraction and has the potential to be developed as an antibiotic. The findings indirectly indicate that fungal endophytes from the medicinal plant could be a potential candidate for bioactive compounds with pharmaceutical properties.
Ectoine and Hydroxyectoine from Halophilic Bacteria Isolated from Traditional Solar Saltern at Pejarakan Village, Buleleng Regency, Bali I Putu Parwata; Siti Maryam; I Nyoman Tika
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.669-680

Abstract

The increased use of ectoine and hydroxyectoine in cosmetics and pharmaceuticals has led to the increasing demand for these bioactive compounds. This study aims to investigate the production of ectoine and hydroxyectoine by halophilic bacteria isolated from traditional solar saltern at Pejarakan Village, Buleleng Regency, Province of Bali, Indonesia. The halophilic bacteria were grown from the brine and the sediment samples using Luria Bertani media. The production of ectoine and hydroxyectoine was determined by inoculating the bacteria in MM63 media containing 12% w/v NaCl. Ectoine and hydroxyectoine were then extracted from the bacterial cells using a mixture of methanol/chloroform/water (10/5/4). Finally, the ability of the bacteria to excrete ectoine and hydroxyectoine was investigated using the osmotic downshock technique. The results showed that a total of 88 halophilic bacteria have been isolated which showed varied salt tolerances from 0 to 27.5% w/v. Most of the bacteria (86 isolates) were able to grow in MM63 media, suggesting the potential of the bacteria producing ectoine and hydroxyectoine. Further investigation showed that 33 selected halophilic bacteria were able to produce ectoine and hydroxyectoine with levels of 9.1 to 301.8 mg/L and 3.9 to 122.1 mg/L, respectively. All the bacteria were also able to excrete ectoine and hydroxyectoine after the osmotic downshock process with levels of 9.8 to 277.5 mg/L and 14.3 to 122.7 mg/L, respectively. The best ectoine and hydroxyectoine-producing bacteria showed the closest homology relationship with Salinivibrio costicola and Salinivibrio kushneri. Our study has found several promising candidates for ectoine and hydroxyectoine producers.
Crude Oil Biodegradation Potential using Acinetobacter baumannii CYA20 and Bacillus subtilis CYA27 from the Bekasi Coast, Indonesia Christy Nur Cahyani; Andes Ismayana; Mohamad Yani
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.701-711

Abstract

The pollution of coastal areas caused by oil spills is an environmental issue that needs further attention. Crude oil contains persistent organic pollutants (POPs) that are difficult to degrade. This study aimed to isolate bacterial strains capable of degrading crude oil from the Bekasi coast through bacterial isolate characterization and crude oil biodegradation tests using a crude oil-enriched microcosm model. Two strains with higher TPH degradation values were selected among the isolated bacteria, namely CYA20 and CYA27, which specifically showed values of 46% and 66%, respectively. These strains were tolerant to NaCl concentrations of up to 4% and 12%, respectively, and they were also tolerant to pH values ranging from 5 to 9 and temperatures between 10°C and 50°C. Both strains were shown to utilize POPs, such as phenanthrene and fluorene, produce biosurfactants, and exhibited an emulsification activity in paraffin ranging from 0.373 to 0.533. Phylogenetic analyses identified these bacterial strains as Acinetobacter baumannii CYA20 and Bacillus subtilis CYA27, respectively. The results of this study indicate that these isolates could be developed as biodegradation agents for the bioremediation of crude oil-contaminated environments.
Pollination by Three Species of Stingless Bees (Hymenoptera: Meliponini) Increase Seed Set of Mustard (Brassica rapa L.: Brassicaceae) Asmini Asmini; Tri Atmowidi; Sih Kahono
HAYATI Journal of Biosciences Vol. 29 No. 5 (2022): September 2022
Publisher : Bogor Agricultural University, Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.4308/hjb.29.5.712-719

Abstract

Pollination and fertilization are critical factors in horticultural cultivation to increase seed production. In this study, we measured the visiting activity and pollination of three species of stingless bees, i.e., Tetragonula laeviceps, Lepidotrigona terminata, and Heterotrigona itama in mustard (Brassica rapa). Visiting activity of stingless bees were observed in mustard plants caged by an insect screen. The observations were done visually per hour, starting from 07:00 until 16:00, using the focal sampling method. The visiting activities observed were flower handling time, foraging rate, and total visit per plant. We also measured the pollen load of each stingless bee species. Results showed the highest foraging rate occurred in H. itama (28.38 flowers/5 minutes), followed by T. laeviceps (27.88 flowers/5 minutes), and L. terminata (27.85 flowers/5 minutes), respectively. The longest flower handling time was found in H. itama (40.15 seconds), followed by T. laeviceps (35.25 seconds), and H. terminata (34.84 seconds). Whereas, the highest total visiting time occurred in H. itama (40.10 minutes), followed by T. laeviceps (37.47 minutes), and L. terminata (36.76 minutes). Heterotrigona itama has a highest pollen load (36,650 pollen grains), followed by L. terminata (26,940 pollen grains), and T. laeviceps (9,700 pollen grains), respectively. Pollination by the stingless bees increase 27-40% the number of pods per plant, 32-72% the number of seeds per pod, 32-54% of seed weight per pod, and 18-36% of seed germination of mustard.

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