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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Growth, histochemical and physiological responses of non-edible oil producing plant (Reutealis trisperma) to gold mine tailings MUHAMMAD HILMI; HAMIM HAMIM; YOHANA C. SULISTYANINGSIH; TAUFIKURAHMAN TAUFIKURAHMAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190416

Abstract

Hilmi M, Hamim H, Sulistyaningsih YC, Taufikurahman. 2018. Growth, histochemical and physiological responses of non-edible oil producing plant (Reutealis trisperma) to gold mine tailings. Biodiversitas 19: 1294-1302. Reutealis trisperma (Blanco) Airy Shaw is a non-edible biodiesel producing plant that is able to grow well in various unfavorable environmental conditions. The study aimed to analyze the growth, physiological, and anatomical responses of R. trisperma to gold mine tailings. Three-month-old of R. trisperma were grown in 8 kg of polybags contained with mixed soil-compost medium treated with 0, 25, 50 and 100% of gold mine tailings for 3 months. Root and shoot growth, physiological and anatomical characters, and histochemical analysis of Pb inside the roots and leaves were examined. The root and shoot growth as well as chlorophyll a and b contents of R. trisperma grown in sole gold mine tailing at 100% significantly decreased, while at the lower concentration of gold mine tailings, the decrease of the growth performances was not significant, or even increased shown in that of 25% of tailing treatment. The treatment of gold mine tailing at 100% also induced lipid peroxidation, indicated by the significant increase in malondialdehyde (MDA) contents in the root as well as the leaves. Histochemical analysis showed that accumulation of Pb occurred both in roots as well as in leaves of R. trisperma treated with 100% of tailings. High-level tailing treatment also induced anatomical alteration in roots as well as leaves of the species. These results indicated that gold mine tailings induced oxidative stress in roots and leaves of R. trisperma resulted in growth inhibition.
Plant diversity in traditional fruit gardens (munaans) of Benuaq and Tunjung Dayaks tribes of West Kutai, East Kalimantan, Indonesia PAULUS MATIUS; SANTOSO JAYA MUDITA TJWA; MIRA RAHARJA; SAPRUDDIN SAPRUDDIN; SILVIANA NOOR; YOSEP RUSLIM
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190414

Abstract

Matius P, Tjwa SJM, Raharja M, Sapruddin, Noor S, Ruslim Y. 2018. Plant diversity in traditional fruit gardens (munaans) of Benuaq and Tunjung Dayaks tribes of West Kutai, East Kalimantan, Indonesia. Biodiversitas 19: 1280-1288. Munaans are traditional fruit gardens of the Benuaq and Tunjung Dayaks tribes of West Kutai, East Kalimantan, Indonesia. This research was conducted in Mencimai, a Benuaq Dayak’s village and Sekolaq Darat, a Tunjung Dayak’ village. A 1.0 ha plot of old munaan lou (lembo lamin) in Mencimai Village was used as representative study site for Benuaq ethnic traditional fruit garden and 1.0 ha plot of old munaan luuq (lembo lamin) in Sekolaq Darat Village as the study site representing Tunjung ethnic fruit gardens. Index of diversity was calculated by using Shannon-Wiener (H') formulae and evenness by using Pielou. Species richness in munaan lou of Mencimai was 174 and munaan luuq of Sekolaq Darat was 165, which consisted of trees and understorey plants such as tree saplings, seedlings, shrubs, herbs, bamboos, lianas, and rattans. Diversity indices (H’) for all stage of plants within both munaan lou of Mencimai and munaan luuq of Sekolaq Darat were 4.45 and 4.21 with the evenness (E) were 0.86 and 0.82 respectively. The common species of fruit trees found in munaan lou of Mencimai were Lansium domesticum, Durio zibethinus, Nephelium sp., Artocarpus integer, Nephelium lappaceum, Baccaurea macrocarpa, and Baccaurea edulis. Meanwhile, D. zibethinus, L. domesticum, Artocarpus anisophyllus, A. integer, Nephelium uncinatum, and B. macrocarpa were the common fruit species in munaan luuq of Sekolaq Darat. The munaans serve many functions in the local context, and the local communities mainly use them as sources of fruits, wood, medicinal plants, tools, and legality of land tenure.
Identification of active compounds and antifungal activity of Toona sinensis leaves fractions against wood rot fungi RIZKI RABECA ELFIRTA; SYAMSUL FALAH; DIMAS ANDRIANTO; TIEN LASTINI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190418

Abstract

Elfirta RR, Falah S, Andrianto D, Lastini T. 2018. Identification of active compounds and antifungal activity of Toona sinensis leaves fractions against wood rot fungi. Biodiversitas 19: 1313-1318. Inhibitory activities of surian or toon (Toona sinensis) leaves fraction origin Sumedang, West Java, Indonesia against wood rot fungi (Ganoderma boninense IPBCC 10.658, Trametes versicolor InaCC F200, and Phanerochaete chrysosporium IPBCC 93.259) were studied. The samples were macerated using methanol and acetone. The results of brine shrimp lethality test (BSLT) showed that the methanol extract had the highest cytotoxicity of LC50 at 29.76 ?g/mL and inhibit the growth of G. boninense (27.78%), T. versicolor (79.26%) and P. chrysosporium (81.11%). The methanol extract was then subsequently fractionated using n-hexane, diethyl ether, and ethyl acetate respectively. The diethyl ether fraction was found to have the highest inhibitory activity against T. versicolor (46.30%) and P. chrysosporium (81.11%). This fraction was further separated using column chromatography and analyzed using thin layer chromatography (TLC), which gave six fractions. Antifungal test exhibited that fraction 5 had the highest antifungal properties against T. versicolor (74.07%) and P. chrysosporium (80.37%). Inhibition of P. chrysosporium resulted in abnormal growth of hyphae morphology as indicated by changes in its growth direction and excessive hyphae branching. Additionally, the results of LC-MS/MS experiment indicated toon leaves fraction 5 which contains N-[2- (D-Glucopyranosyloxy)ethyl]-2-hydroxy-N-[2hydroxy3 (octadecyloxy) propyl] butanamide dan Brucine compounds that were regarded as the antifungal compounds.
Abundance and spatial distribution of blue swimming crab (Portunus pelagicus) larvae during east monsoon in the East Lampung waters, Indonesia DURANTA D. KEMBAREN; ZAIRION ZAIRION; MOHAMMAD M. KAMAL; YUSLI WARDIATNO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190420

Abstract

Kembaren DD, Zairion, Kamal MM, Wardiatno Y. 2018. Abundance and spatial distribution of blue swimming crab (Portunus pelagicus) larvae during east monsoon in the East Lampung waters, Indonesia. Biodiversitas 19: 1326-1333. The blue swimming crab/BSC, Portunus pelagicus, is an economically important species in fishery industry and continuously being exploited, particularly in the East Lampung waters. BSC research in Indonesia during the last decade was only restricted to the adult phase, while research on their larval dynamics in nature has not been done yet. This study aimed to assess the abundance and the distribution of BSC larvae, and to describe their correlation to its environmental conditions. This study was conducted in June 2017 (during east monsoon) in the East Lampung waters. Sampling was done in surface water during the daylight hours on nine sites with three replicates on each site. Plankton abundance and oceanographic profile were also recorded from the same sampling site. The result from this study showed that the water quality from the environment was suitable for the development of BSC larvae. The abundance of the early-stage larvae (Z1-Z3) was relatively higher than the late-stage larvae (Z4 and M). The larval stages of BSC were dispersed and completed their development in the mid-shore and offshore waters. There was a tendency that the early-stage was more abundant in the northern part, while the late-stage was more abundant in the southern part of the study area. The highest larval abundance was found in the mid-shore, particularly in site number five, which was influenced by the water mass density and current direction during the east monsoon. Moreover, oxygen concentration and salinity of the water environment influenced the early-stage larvae abundance more than the late-stages abundance.
Fauna of click beetles (Coleoptera: Elateridae) in the interfluve of Rivers Moksha and Sura, Republic of Mordovia, Russia ALEXANDER B. RUCHIN; LEONID V. EGOROV; GENNADY B. SEMISHIN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190423

Abstract

Ruchin AB, Egorov LV, Semishin GB. 2018. Fauna of click beetles (Coleoptera: Elateridae) in the interfluve of Rivers Moksha and Sura, Republic of Mordovia, Russia. Biodiversitas 19: 1352-1365. The results of the study of fauna of click beetles in the Republic of Mordovia are presented. By now, 58 species of click beetles have been recorded here. Adrastus pallens is a new record for the republic. As per the literature information, 6 species of click beetles (Agriotes pilosellus, Melanotus crassicollis, Melanotus fusciceps, Liotrichus affinis, Pseudanostirus globicollis, Stenagostus rufus) are known and these indications require confirmation. Two species (Agriotes acuminatus, Limoniscus suturalis) are excluded from the fauna. Taking into account the literary information in the fauna of Mordovia, 64 species of Elateridae are known. Agrypnus murinus, Agriotes lineatus, Agriotes obscurus, Agriotes sputator, Dalopius marginatus, Ampedus balteatus, Ampedus pomorum, Hemicrepidius niger, Athous subfuscus, Prosternon tessellatum, Selatosomus aeneus are among the mass species. A list of the species is presented, which with a high degree of probability can still be found in the republic.
Site selection and soil fertility management by the Outer Baduy People (Banten, Indonesia) in maintaining swidden cultivation productivity JOHAN ISKANDAR; BUDIAWATI S. ISKANDAR; RUHYAT PARTASASMITA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190421

Abstract

Iskandar J, Iskandar BS, Partasasmita R. 2018. Site selection and soil fertility management by the Outer Baduy People (Banten, Indonesia) in maintaining swidden cultivation productivity. Biodiversitas 19: 1334-1346. The Outer Baduy people heavily depend on swidden cultivation for subsistence. They grow rice in the uplands every year based on their calendar. The cropping calendar and calendar of social events are often closely interlinked. There is also traditional wisdom for conservation of land and forest such as the zonation for land use system. The Outer Baduy swidden land productivity is mainly determined by the time period of forest fallow relative to that of the crops. The long-term success of the Outer Baduy swidden cultivation depends on how well the fallow period restores or maintain soil fertility. The aim of this research was to study the local knowledge of Outer Baduy of soil categories and soil fertility and the management of soil fertility in their traditional practice of swidden cultivation. The method used in this study was the qualitative one, applying observation and in-depth interviews to collect the primary data. In addition, soil analysis was conducted by the Laboratory of Soil, Faculty of Agriculture, Padjadjaran University, Sumedang, Indonesia. The results of this study showed that the soils are classified by the Outer Baduy based on color, water content, stoniness or rock parent material, and humus content. To maintain soil fertility in the swidden cultivation, the Outer Baduy people have developed some strategies, such as determining appropriate fallow time period, applying zero tillage, and planting legume crops in both the swidden fields and the fallow land. Traditionally, because the Outer Baduy are forbidden to use inorganic fertilizers, the length of fallow period and kind of vegetation succession have an important role in maintaining soil fertility.
The impact of oil palm plantation on ecology of rambutan (Nephelium lappaceum) insect pollinators SYARIFUDDIN SYARIFUDDIN; ELIDA HAFNISIREGAR; JASMI JAMBAK; CICIK SURYANI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190422

Abstract

Syarifuddin, Hafnisiregar E, Jambak J, Suryani C. 2018. The impact of oil palm plantation on ecology of rambutan (Nephelium lappaceum) insect pollinators. Biodiversitas 19: 1347-1351. The establishment of oil palm plantation in Sumatra was the result of massive conversion of its rainforest. Many studies have shown that oil palm plantation is a main threat to biodiversity including insect pollinators. However, its effect on the ecology of insect pollinators is still poorly studied. In this study, we investigated the impact of oil palm plantation on the species richness and composition, abundance as well as pattern of time period and duration of insect visit on rambutan, Nephelium lappaceum, flowers. Insect visitors of flowers were compared between rambutan grown in the Oil Palm Plantation (OPP) ecotone and the one in the mixed Oil Palm Garden Forest (OPGF) ecotone. Number of visiting insects on each pannicle in ten minutes period and number of flowers and pannicles visited within 2 minutes were enumerated. The length of time of a randomly selected individual of the most abundant insects visited a flower and a pannicle was also recorded. The results showed that species composition of insect visitors was different between the two ecotones and total insect abundance was significantly higher on rambutan flowers located in the OPGF ecotone compared to rambutan trees grown close to oil palm plantation. The insect visitors on rambutan flowers in the OPGF ecotone were dominated by bees while in the OPP was dominated by Calliphorid fly. Among the main pollinators, the bee Apis cerana visited far more flowers and pannicles compared to Trigona sp and Chrysomya sp. Thus, more evidence showing that oil palm plantation probably has caused the disappearance of main species of bee pollinators, reduced abundance of flower-visiting insects, change of pollinator species composition, change of the pattern of time and change the duration of insect visit of rambutan flowers.
Possibility of co-protection for populations of steppe and forest plants in alone location: A case study in Republic of Mordovia, Russia MARIA A. SENCHUGOVA; ANATOLIY A. KHAPUGIN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190427

Abstract

Senchugova MA, Khapugin AA. 2018. Possibility of co-protection for populations of steppe and forest plants in alone location: a case study in Republic of Mordovia, Russia. Biodiversitas 19: 1387-1395. In conditions of vegetation mosaicity of forest-steppe zone, many threatened plant species from different coenologic groups could growth in spatially close habitats. In this study, we tested whether steppe-related (Iris aphylla) and forest-related (Lilium martagon) plants could inhabit an alone location in conditions of the Republic of Mordovia, Russia. It would allow a probability to establish a Protected Area for preservation of two target plant species. For this purpose, we studied populations of I. aphylla and L. martagon in different locations, including habitats typical and atypical for these species. Using Jacquard similarity index and Tsyganov ecological scales, we compared floristic compositions and environmental variables of all studied locations. As a result, we revealed 25.3%-probability of co-habitation of I. aphylla and L. martagon in conditions of the Republic of Mordovia. Moreover, a proposed habitat was typical for L. martagon. This species has not been found in grassland habitats, while I. aphylla was registered within forest habitats. Obtained results allow to improve the Protected Areas management in the region by organization of a smaller Protected Area by conserving higher number of threatened plant species.
Source, harvesting, conservation status, threats and management of indigenous plant used for respiratory infections and related symptoms in the Limpopo Province, South Africa SEBUA SILAS SEMENYA; ALFRED MAROYI
Biodiversitas Journal of Biological Diversity Vol. 20 No. 3 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200325

Abstract

Abstract. Semenya SS, Maroyi A. 2019. Source, harvesting, conservation status, threats and management of indigenous plant used for respiratory infections and related symptoms in the Limpopo Province, South Africa. Biodiversitas 20: 789-810. This survey explored Bapedi traditional healer’s (THs) practices pertinent to native plants used to treat respiratory infections (RIs) and related symptoms (RSs). Semi-structured questionnaires and participatory observations were used to gather information from 240 THs in the Limpopo Province, South Africa. 186 plants from 75 families were harvested by these THs, mainly from the communal lands (81.2%), throughout the year. Plant parts used for RIs and RSs remedies was destructively harvested in wilderness compared to homegardens. Most (n=174) species from which these parts are obtained appears on the South African National Red Data List of plants, with 88.5% having a list concern status. This included Adansonia digitata, Boscia albitrunca, Catha edulis, Securidaca longepedunculata and Sclerocarya birrea which are also protected under the National Forest Act of 1998 (Act no. 84 of 1998). A further, 8.6% (n=15) of Red Data Listed plants are of conservation concern, with various status namely near threatened (38.3%), declining (20%), data deficient (13.3%), critically endangered and vulnerable (3.3%, for each), as well as endangered (6.6%). There were both consensus and disjunction amongst THs and Red Data List regarding the status of plants in the wild. This study provides valuable data for the conservation of medicinal plants in Limpopo Province.
Diversity of urinary tract infection bacteria in children in Indonesia based on metagenomic approach GRACE CHRISTINE; SRI BUDIARTI; INDRI ASTUTI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 4 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190425

Abstract

Christine G, Budiarti S, Astuti RI. 2018. Diversity of urinary tract infection bacteria in children in Indonesia based on metagenomic approach. Biodiversitas 19: 1375-1381. Urinary tract infection (UTI) is a common bacterial infection in childhood in both males and females. The infection is usually caused by bacterial invasion of the urinary tract including the lower and the upper urinary tract. In Indonesia, to the best our knowledge, the diversity of urinary tract infection bacteria has not been reported yet. Therefore, the aims of this study were to identify the diversity of both culturable and unculturable bacteria in children diagnosed with UTI. In this study, urine samples were obtained from different age groups ranging 6-17 years. Analysis of 16S rRNA gene sequence showed eight culturable isolates (SBU1, SBU2, SBU3, SBU4, SBU5, SBU6, SBU7, SBU8) are closely related to Escherichia coli, Klebsiella pneumoniae, Enterobacter aerogenes, Citrobacter sp. and Acinetobacter sp. with maximum identity up to 98-99%. Diversity of unculturable bacteria community based on 16S rRNA gene was represented by 9 DGGE (Denaturing Gradient Gel Electrophoresis) bands. The nine respective bands showed the similarity ranging from 84 up to 96% with Klebsiella sp, Escherichia sp., Lactococcus lactic, Shigella flexneri and uncultured bacterium. Based on phylogenetic analysis, all culturable isolates belong to phylum Proteobacteria, which is dominated by family of Enterobacteriaceae. Interestingly, by using metagenomic approach, it is observed that bacteria belong to phylum Firmicutes were found in the UTI-diagnosed patients, in addition to those bacterial isolates from phylum Proteobacteria. To our knowledge, this is the first study to report the occurrence of Firmicutes and Proteobacteria in UTI-diagnosed patients in Indonesia.

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