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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Ideal planting space for merbau (Intsia bijuga) forest plantations in Papua based on distance-dependent competition ELIESER VIKTOR SIRAMI; DJOKO MARSONO; RONGGO SADONO; MUHAMMAD ALI IMRON
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190630

Abstract

Sirami EV, Marsono D, Sadono R, Imron MA. 2018. Ideal planting space for merbau (Intsia bijuga) forest plantations in Papua based on distance-dependent competition. Biodiversitas 19: 2219-2231. Distance-based competition between merbau (Intsia bijuga (Colebr.) Kuntze) and neighboring trees could be applied to determine the planting space between merbau trees and shade trees in plantations. This research was conducted to identify the characteristics of merbau competition with neighboring trees and determine the ideal spacing of merbau trees. The sampling design using was the systematic line technique with hypothetical plot and sample tree as the quadrant center. The competitors were determined using a virtual high approach and header contact. Distance-based competitions were identified using the Hegyi index. Sixteen species had the highest competition index because of their dominance in the tree structure, namely Pometia coriacea, Intsia bijuga, Pimelodendron amboinicum, Horsfieldia laevigata, Palaquium amboinense, Pometia pinnata, Garcinia sp., Spathiostemon javensis, Prunus costata, Sterculia macrophylla, Terminalia complanata, Lepiniopsis ternatensis, Horsfieldia irya, Dysoxylum octandrum, Buchanania arborescens, and Ficus similis. Merbau responded to the high intensity of competition by tilting its canopy in the opposite direction to the position of the competitors’ canopy, making an irregular canopy shape, and growing the first branch at the lowest point on the stem. The ideal planting space for merbau trees in the plantations was 3-7 m.
Short Communication: Growth and mortality rate of Black Pomfret Parastromateus niger (Bloch, 1795) and Silver Pomfret Pampus argenteus (Euphrasen, 1788) in Paloh Waters, West Kalimantan, Indonesia ADRIAN DAMORA; DWI ARIYOGAGAUTAMA; RONNY I. WAHJU; HENDRO SUSANTO; JOHN WANG
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190633

Abstract

Damora A, Ariyogagautama D, Wahju RI, Susanto H, Wang J. 2018. Short Communication: Growth and mortality rate of Black Pomfret Parastromateus niger (Bloch, 1795) and Silver Pomfret Pampus argenteus (Euphrasen, 1788) in Paloh Waters, West Kalimantan, Indonesia. Biodiversitas 19: 2247-2251. Three species of pomfret fish were caught in Paloh waters including Parastromateus niger, Pampus argenteus, and Pampus chinensis. P. niger and P. argenteus which were more dominant than P. Chinensis. Pomfret fishing in the Paloh waters is not carried out throughout the year, but generally only in August to October every year. The main fishing gear used was drift gill net. Data on the growth parameter and mortality of the pomfret fish is required as an effort for the management of this fish. This study was aimed to estimate the growth and mortality rate of P. niger and P. argenteus in Paloh waters, located in West Kalimantan. This study was conducted from April 2014 to June 2017. The fish samples were collected by catching the fish using drift gill net used by the fishing vessels. The data were analyzed using an analytic model and run using ELEFAN 1 software and Length-converted Catch Curve on FISAT II software. The result showed that von Bertalanffy growth parameters covering growth curvature (k), asymptotic length (L?), and the age of fish in length zero (t0) was 0.26 year-1, 46.2 cm TL and -1.85 years for P. niger and 0.53 year-1, 46.2 cm TL and -0.88 years for P. argenteus. The von Bertalanffy growth function for P. niger as Lt = 46.2[1-e-0.26 (t+1.85)] and for P. argenteus as Lt = 46.2[1-e-0.53 (t+0.88)]. These functions described the expected or average length at a time (age). Total mortality rate (Z), natural mortality rate (M) and fishing mortality (F) were 0.93 year-1, 0.29 year-1 and 0.64 year-1 for P. niger and 1.68 year-1, 0.47 year-1 and 1.21 year-1 for P. argenteus. Exploitation rate (E) was 0.68 year-1 for P. niger and 0.72 year-1 for P. argenteus. The growth of P. niger is slower than the growth of P. argenteus and the fishing mortality of P. argenteus is higher than P. niger’s. Both of the exploitation rates indicated that the fish resources are over-exploited.
Ichthyofauna checklist (Chordata: Actinopterygii) for indicating water quality in Kampar River catchment, Malaysia CASEY KEAT-CHUAN NG; PETER AUN-CHUAN OOI, WEY-LIM WONG; GIDEON KHOO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190634

Abstract

Ng CKC, Ooi PAC, Wong WL, Khoo G. 2018. Ichthyofauna checklist (Chordata: Actinopterygii) for indicating water quality in Kampar River catchment, Malaysia. Biodiversitas 19: 2252-2274. The limnological habitats are receptors of pollution, thus local fish species richness is a plausible biological indicator to reflect the quality of a particular water body. However, database on species occurrence that corresponds with the water physico-chemistry constituents is often not available. The problem is compounded by the lack of species identification description to assist those working on river and freshwater resource conservation projects. This paper attempts to fill the gaps in the context of Kampar River drainage. Based on sampling exercises conducted from October 2015 to March 2017, an annotated list with visual data for 56 species belonging to 44 genera and 23 families is presented. The water physico-chemistry data is also summarized with the corresponding visual data of limnological zones studied. The species diversity results are further compared with other local drainages and the correlation between area size and their relationship is expressed by y = 17.627e0.0601x. This paper provides species-level identification information for front line practice and demonstrates how the fish taxonomy discipline can be adapted for practical application in freshwater resource monitoring and management.
Knowledge and perception of pelung keepers’s toward chicken contests in West Java, Indonesia INDRAWATI Y. ASMARA; DANI GARNIDA; MARINA SULISYTATI; SAFITRI TEJANINGSIH; RUHYAT PARTASASMITA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190631

Abstract

Asmara IY, Garnida D, Sulisytati M, Tejaningsih S, Partasasmita R. 2018. ­­­­Knowledge and perception of pelung keepers’s toward chicken contests in West Java, Indonesia. Biodiversitas 19: 2232-2237. Pelung chicken is an indigenous chicken breed which has social and cultural functions in particular communities in Indonesia. Contests are conducted regularly as a media to show the singing ability of Pelung chickens and the activities are considered important to maintain the existence of the chickens. The objective of this study was to determine the knowledge and perceptions of chicken keepers toward chicken contests for Pelung chickens. A survey using open and structured questionnaire was conducted to collect data involving 133 Pelung keepers. The study was carried out in four districts in West Java Province, Indonesia including Cianjur, Sukabumi, Bandung, and Garut Districts. The data were analyzed using descriptive analysis. The result showed that almost respondents knew about contests and they defined contests as a media to find good breeds as well as a media to find and/or improve networks. Main sources of information contests were the organization, family, and social media. Respondents had positive perception toward contests, and they actively participated in the different level of contests. The findings are important as social input for the management of animal genetic resources (AnGR) in Indonesia
Short Communication: Genetic variability of local corn cultivars from Kisar Island, Maluku, Indonesia based on morphological characters HERMALINA SINAY; RITHA L. KARUWAL
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190638

Abstract

Sinay H, Karuwal RL. 2018. Short Communication: Genetic variability of local corn cultivars from Kisar Island, Maluku, Indonesia based on morphological characters. Biodiversitas 19: 2302-2307. The purpose of this research is to know the relationship of local corn cultivars derived from Kisar Island based on the morphological characterization. The research was conducted in Kisar Island, Southwest Maluku District, Maluku Province, Indonesia. The morphological characterization was performed on 5 stem characters, 14 leaf characters, 15 male flower characters, 2 female flower characters, 12 cob characters, and 12 seed characters. The description was conducted using the corn descriptor guide by CIMMYT, IBPGR, UPOV, and Departemen Pertanian Republik Indonesia. Color standardization was conducted following standard color charts from the Royal Horticultural Society Color Chart. The data was described and scored based on the appearance of each plant organ observed in the field relative to the descriptor guide. The scoring results were then standardized into 0/1 binary data, which were then analyzed by NTSYS program used for dendrogram construction. Cluster analysis shows that there are two main groups of corn cultivars. The first group consists of merah delima tongkol cokelat, merah darah, putih, kuning genjah, and merah delima tongkol putih. The second group consists of kuning dalam and pulut cultivars.
Short Communication: Inventory of traditional medicinal plants and their uses from Atinggola, North Gorontalo District, Gorontalo Province, Indonesia NOVRI YOULA KANDOWANGKO; MUKHLISULFATIH LATIEF; RAMPI YUSUF
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190637

Abstract

Kandowangko NY, Latief M, Yusuf R. 2018. Inventory of traditional medicinal plants and their uses from Atinggola, North Gorontalo District, Gorontalo Province, Indonesia. Biodiversitas 19: 2294-2301. Medicinal plants have been used by the people of Gorontalo as a hereditary tradition. But this knowledge has not spread to the wider community because the traditional wisdom about medicinal plants has not been documented, stored and managed properly by employing digital tools. The purpose of this study is to prepare an inventory of the traditional medicinal plants and the details of their uses in Atinggola, North Gorontalo district, Indonesia. Data has been collected by ethnobotanical survey method and analyzed using the descriptive qualitative method. The study has shown that 38 species of medicinal plants, belonging to 20 families, are used to cure many diseases by the traditional healers of Atinggola. Among them, 6 species are used to treat fever, 5 species to treat skin diseases, 2 species each to treat cancer, gastrointestinal diseases, liver diseases, and as body tonic to restore power; 1 species each to treat toothache, malaria, tonsillitis, allergies, eye irritation, wound infections and tuberculosis (TBC). Plant parts used in the treatment practices are leaf, fruit, flower, rhizome, root, stem, seed, shoots, midribs parts, etc. However, the most dominant part used is the leaf of the plants. Various methods such as boiling, squeezing, scraping, chewing, smashing, brewing, etc. are used to prepare the medicines. 29 species (76.31%) of medicinal plants are collected from cultivated sources such as backyards and gardens while 9 species (23.68%) are still sourced from forests.
Bycatch composition of cutlassfish trawlers during fishing season in Bushehr and Hormozgan, Persian Gulf, Iran AHMAD FOULADI SABET; SEYED YOUSEF PAIGHAMBARI; MOJTABA POULADI; HADI RAEISI; REZA ABBASPOUR NADERI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190635

Abstract

Fouladi Sabet A, Paighambari SY, Pouladi M, Raeisi H, Abbaspour Naderi R. 2018. Bycatch composition of cutlassfish trawlers during fishing season in Bushehr and Hormozgan, Persian Gulf, Iran. Biodiversitas 19: 2275-2282. This investigation was conducted to determine the bycatch composition of cutlassfish (Trichiurus lepturus) trawlers in Bushehr and Hormozgan waters during fishing season 2013. Data collection was carried out in the summer for Bushehr and in the autumn for Hormozgan province for one month. All trawler vessels were equipped with a 36 m head rope and 75 mm stretched mesh size in the codend and 90 to 200 mm stretched mesh size in the panel. 47 species included 35 species of teleosts, 9 species of elasmobranches and 3 species of invertebrates were identified in Bushehr. Also, 48 species included 38 species of teleosts, 7 species of elasmobranches and 3 species of invertebrates were identified in Hormozgan. The weight and numerical averages of bycatch species were 25.41 (kg h-1) and 205.9 (n h-1) in Bushehr, and 92.58 (kg h-1) and 440.4 (n h-1) in Hormozagan. I. megaloptera, S. tumbil, N. japonicus, D. acuta, C. sexfasciatus, L. equulus in Bushehr and P. sextarius, I. megalopteran, M. cinereus, P. macrophthalmus, N. japonicus and S. tumbil in Hormozgan had highest catch weight. Based on the weight and number, PCA and nMDS methods were indicative of two different assemblages in hunting places. Furthermore, ANOSIM similarity analysis confirmed the results of PCA and nMDS and showed a significant difference in the catch composition of two fishing zones.
Profiles of water quality at Menjangan Besar Island, Karimunjawa, Central Java Province, Indonesia BAMBANG SULARDIONO; CHURUN A’IN; MAX RUDOLF MUSKANANFOLA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190639

Abstract

Sulardiono B, A’in C, Muskananfola MR. 2018. Profiles of water quality at Menjangan Besar Island, Karimunjawa, Central Java Province, Indonesia. Biodiversitas 19: 2308-2315. The development of anthropogenic and tourism activities causes the ecological impact on water quality. The profile of water quality and sediment are the representation of environmental condition of ecosystems, then they could be indicators of pollution, fertility, suitability, and environmental carrying capacity on marine life. This study aimed to characterize the environmental indicator based on the quality profile of Menjangan Besar waters, Karimunjawa, Central Java. Data collection using a purposive sampling method based on water and sediment characteristics in Menjangan Besar waters. The research location is divided into three stations, namely: station A: the waters of fish cage activity; station B: floating guesthouse activity; and station C: seaweed marine culture. Variable on water quality profile consists of N-NO3 (mg/L) and PO4-P (mg/L), chlorophyll-? (mg/m3), and bacterial (CFU/mL), and other water quality support, while the variables on sediment quality profile consist of Phosphorus (mg/g) and PO4-P (mg/g), organic (%), C-organic (%) and bacterial (CFU/g), and sediment grain size. The calculation data analysis method of water and sediment total bacteria profile used Total Plate Count (TPC) by following SNI 7545.1 (2009), while analysis for nitrification bacteria (Nitrosomonas and Nitrobacter) using Most Probable Number (MPN). Data analysis of sediment grains size used two methods, i.e. (i) dry mechanic method by using sieve shaker, and (ii) wet mechanic method by using a pipette. Data analysis of nitrate and phosphate using Brucine Sulfanilik method. Mapping of the spatial distribution of measurement data for water nutrient contents (NO3-N and PO4-P), bacteria, and Chlorophyll-? in the waters using ArcGIS software application tool. The results showed that nitrification bacteria content in the water column is lower than in the sediments layer. Total bacteria content in both the water column and sediment layer varies between stations. Total bacteria in station A is higher than the other stations. The water nutrient content (Nitrate and Phosphate) is still above the quality standard for Marine Biota (Kepmen LH No. 51/2004). The condition of the fertility of Menjangan Besar waters is oligotrophic tend to mesotrophic, in the sense that the waters quality is low to medium conditions, and not yet dangerous for marine biota.
Studies on the diversity of macrofungus in Kodaikanal region of Western Ghats, Tamil Nadu, India BOOBALAN THULASINATHAN; MOHAN RASU KULANTHAISAMY; ARUMUGAM NAGARAJAN; SARAVANAN SOORANGKATTAN; JOTHI BASU MUTHURAMALINGAM; JEYAKANTHAN JEYARAMAN; ALAGARSAMY ARUN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190636

Abstract

Boobalan T, Mohan Rasu K, Arumugam N, Saravanan S, Jothi Basu M, Jeyakanthan J, Arun A. 2018. Studies on the diversity of macrofungus in Kodaikanal region of Western Ghats, Tamil Nadu, India. Biodiversitas 19: 2283-2293. We have demonstrated the distribution of macro fungal communities in the selected forest territory of Kodaikanal (Poondi) region, which houses about 100 mushrooms species diverse forms of mushrooms including both the soil-inhabiting (n = 45) and wood-inhabiting (n = 55) species. Kodaikanal is situated on a plateau between the Parappar and Gundar valleys; this area experiences peculiar lower temperature between 8.2°C and 19.7°C, higher humidity between 92% and 95%, which in turn enhances the growth of different types of mushrooms throughout the year. However, the peak production and macro fungal flushes were observed during the winter season followed by the northeast monsoon (Oct-Dec 2015). A total of 100 species belonging to 51 families were documented from this study sites. Moreover, some species (e.g., Ganoderma sp and Phellinus sp) persists all around the year in this region. However, some incidents of logging and burning of host trees have resulted in the decline of the macro fungal populations in this region. Hence the present study highlights the diversity of macro fungal population and also suggests their importance as part of biodiversity conservation.
Geometric morphometrics species discrimination within the Genus Nemipterus from Malaysia and its surrounding seas AYESHA IMTIAZ; DARLINA MD NAIM
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190640

Abstract

Imtiaz A, Md Naim D. 2018. Geometric morphometrics species discrimination within the Genus Nemipterus from Malaysia and its surrounding seas. Biodiversitas 19: 2316-2322. High demand of fish protein diet and exposure of marine fish to a challenging marine environment has increased the importance of advanced fisheries research especially in Malaysian waters, particularly research related to taxonomy, biology, diversity, population structure as well as phylogenetic histories of commercially important marine fish species to ensure continuous supply of fish and fish products. This current research aimed to explore the potential of geometric morphometrics method to discriminate among taxa of genus Nemipterus through body size and shape differences. A total of 171 individuals representing ten species of genus Nemipterus collected from Malaysia and its surrounding seas were examined. The resulting homologous landmarks were subjected to generalized procustes analysis followed by principal component analysis. Principle component scores were further investigated to cross-validated discriminant analysis to determine the efficacy of landmarks in discriminating by taxon. Our finding shows that species within the genus Nemipterus can be differentiated using geometric morphometrics method as strongly depicted by canonical variance analysis. This current study is the first report utilizing geometric morphometrics approach conducted on the genus Nemipterus from Malaysian waters.

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