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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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A checklist of Bombyliidae (Diptera) from Mordovia, Russia and variation of wing shape in Bombylius species MARIYA ALEXANDROVNA CHURSINA; ALEXANDER BORISOVICH RUCHIN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190622

Abstract

Chursina MA, Ruchin AB. 2018. A checklist of Bombyliidae (Diptera) from Mordovia, Russia and variation of wing shape in Bombylius species. Biodiversitas 19: 2147-2156. A checklist of Bombyliidae (Diptera) of Republic of Mordovia (Russia) is provided, based on material collected from 2008 to 2017. One hundred ninety specimens from 75 localities were collected. Fourteen of the twenty species are listed as belonging to the fauna for the first time. Intraspecific variation and sexual dimorphism in the wing shape of three species of the genus Bombylius Linnaeus, 1758 were investigated using geometric morphometric techniques. The analysis revealed that wing shape is a good discriminator of the species. In addition, significant sexual dimorphism were found: females of two of the three species had larger wings than males. The sex shape differences consisted mainly of ?hanges in the placement of the CuA and A1, while interspecific wing shape variation distributed in more dimensions. There was no evidence for allometric relationships relating to sexual dimorphism and interspecific variation. Potential adaptive significance of interspecific and intersex variation in wing size and shape is discussed.
Vegetation analysis along the altitudinal gradient of Mt. Ilong, Halcon Range, Mindoro Island, Philippines ELAINE LOREEN C. VILLANUEVA; INOCENCIO E. BUOT, JR.
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190624

Abstract

Villanueva ELC, Buot, JrIE. 2018. Vegetation analysis along the altitudinal gradient of Mt. Ilong, Halcon Range, Mindoro Island, Philippines. Biodiversitas 19: 2163-2174. The vegetation of Halcon Range is diverse, unique, and culturally important; however, there is a very limited information on its altitudinal distribution and structure, leading to the formation of land uses that trigger problem in sustainable management decisions for the mountain. This study analyzed the vegetation in land use types distribution along the altitudinal gradient of Mt. Ilong, Halcon Range, Mindoro, Philippines. Fourteen plots of 10 x 10m were established along the slope from 100m-1400m elevation. The tree species that were sampled from the plots were subjected to classification and ordination analyses. The dendrogram showed three distinct vegetation zones corresponding land use types: Zone I (agroforest land use zone), Lansium-Artocarpus-Swietenia-Ficus-Nephelium-Mangifera zone; Zone II (forest land use zone), Cyathea-Astronia-Syzygium-Garcinia-Ficus-Psydrax-Diplodiscus zone; and Zone III (forest land use zone), Agathis-Suli-Alitugba-Ardisia zone. Canonical correspondence analysis (CCA) indicated that elevation, temperature and pH level are the environmental variables that strongly influenced the vegetation distribution in various land uses, a characteristic that is similar to other tropical mountains.
A checklist of medically important flies (Order: Diptera) in the central region of Thailand TANAWAT CHAIPHONGPACHARA; SEDTHAPONG LAOJUN; NITIWOOT JONGVISUTTISAN; PATCHARAPRON TUBSAMUT; APICHAYA DASOM
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190620

Abstract

Chaiphongpachara T, Laojun S, Jongvisuttisan N, Tubsamut P, Dasom A. 2018. A checklist of medically important flies (Order: Diptera) in the central region of Thailand. Biodiversitas 19: 2134-2139. This study surveyed species of medically important flies in the central region of Thailand including Samut Songkram (coastal area representative), Bangkok (urban area representative), Phranakhon Si Ayutthaya (Lower alluvial area representative), Nakhon Sawan (upper alluvial area representative) and Sukhothai (mountainous area representative). This was done through a division of the central region into 5 areas, according to the landscape, including the coastal area, urban area, upper alluvial area, lower alluvial area and mountainous area. Flies were collected using insect nets and fly traps during July 2018. A total was 3872 adult flies, belonging to 4 subfamilies and 6 genera within 9 species were captured. The highest numbers of flies were found in the mountainous area, followed by coastal areas, upper alluvial area, urban area and lower alluvial area, respectively. All the study areas were within the central region of Thailand. The Chrysomya megacephala was the predominant species, with a total of 2953 adult flies captured. This was followed by the Musca domestica (n = 563), Achoetandrus rufifacies (n = 177) and Sacrophaga spp. (n = 137), respectively. The four species of flies collected in this study were Lucilia cuprina (n = 28), A. villeneuvi (n = 2), C. nigripes (n = 2) and Hemipygiopsis ligurriens (n = 2). The results of this study showed the distribution of flies, which is important information for diarrhoea vector control.
Short Communication: Ethnozoology – The perception of Tobelo Dalam tribal community in Saolat Village, East Halmahera, Indonesia towards cuscus (Phalangeridae) ELIZABETH NOVI KUSUMANINGRUM; JATNA SUPRIATNA; ABINAWANTO ABINAWANTO; ANOM BOWOLAKSONO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190621

Abstract

Kusumaningrum EN, Supriatna J, Abinawanto, Bowolaksono A. 2018. Short Communication: Ethnozoology – The perception of Tobelo Dalam tribal community in Saolat Village, East Halmahera, Indonesia towards cuscus (Phalangeridae). Biodiversitas 19: 2140-2146. The complexity of the hard lives of Tobelo Dalam tribal community who live in Saolat village, district South Wasile provokes the high activity of animal poaching in Aketajawe-Lolobata National Park (TNAL) including cuscus hunting for both sale and consumption purposes. The study aimed to describe the traditional knowledge of Tobelo Dalam people in Saolat village in applying the systems of utilization and local conservation knowledge towards cuscus. This study was analyzed by the qualitative method with explorative survey technique, interview, and completing questionnaires. This study used 4 key informants (3 males, 1 female) and 50 adult respondents (25 males and 25 females). The results showed that the average percentage of traditional knowledge owned by males and females were 69.1% and 30.9 %, respectively, so the males had an advantage of knowledge around 38.3 % than females in addressing the traditional knowledge of cuscus. The community of Tobelo Dalam tribe hunts cuscus for four different purposes, i.e., for traditional ceremonies, traditional medicine, cuisine, and sell it for more income to support the economy of family.
Molecular characterization of Plant Growth Promoting Rhizobacteria using 16S rRNA sequences in the organic rice field of Sukorejo Village, Central Java, Indonesia SLAMET SANTOSA; SUTARNO SUTARNO; EDI PURWANTO; SURANTO SURANTO; SAJIDAN SAJIDAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190623

Abstract

Santosa S, Sutarno, Purwanto E, Suranto, Sajidan. 2018. Molecular characterization of Plant Growth Promoting Rhizobacteria using 16S rRNA sequences in the organic rice field of Sukorejo Village, Central Java, Indonesia. Biodiversitas 19: 2157-2162. Plant Growth Promoting Rhizobacteria (PGPR) are rhizosphere bacteria that can be utilized to increase plant growth and suppress plant diseases. PGPR concentrate on the concept of sustainable agriculture due to their role as biostimulant by synthesizing and regulating the concentration of various phytohormones and as biofertilizers. It is important to determine the original PGPR found in the roots of rice plants. This study aimed to identify PGPR based on 16S rRNA sequences. The bacterial strain was isolated from the rhizospheric soil of IR 64 organic and inorganic rice fields in the region of Sragen District, Central Java, Indonesia. The bacterial isolates were grown on the Luria Bertani (LB) Agar Medium. There were 10 colonies obtained with different morphological variations, nine of those were from the organic rice field. Molecular characterization using 16R rRNA sequences suggested the identity the nine isolates were of Pseudomonas aeruginosa strain RI-98-1, Stenotrophomonas maltophilia strain S431, Bacillus subtilis strain CEB2, Bacillus cereus strain ATCC 14579 clone EA195, S. maltophilia strain 5517, Exiguobacterium acetylicum strain SSA-3, Serratia nematodiphila strain HC4, Bacillus cereus strain ANP221, and Acinetobacter junii strain M. pstv. 21.4 Pseudomonas and Bassilus produce phytohormones (auxins) and convert inorganic phosphate to organic and Stenotropomonas can increase the growth of Acinetobacter and Exigobacterium as phosphate solvents in the soil.
Population genetics and ecology of Sumatran camphor (Dryobalanops aromatica) in natural and community-owned forests in Indonesia FAUJIAH NURHASANAH RITONGA; FIFI GUS DWIYANTI; CECEP KUSMANA; ULFAH JUNIARTI SIREGAR; ISKANDAR ZULKARNAEN SIREGAR
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190625

Abstract

Ritonga FN, Dwiyanti FG, Kusmana C, Siregar UJ, Siregar IZ. 2018. Population genetics and ecology of Sumatran camphor (Dryobalanops aromatica) in natural and community-owned forests in Indonesia. Biodiversitas 19: 2175-2182. Dryobalanops aromatica Gaertn. f. (Sumatran camphor) is a valuable tree species that produces borneol (camphor) and good-quality timber. However, the population of this species has declined due to illegal logging and conversion of forests into plantations and has been classified as Critically Endangered by the International Union for Conservation of Nature. This study aimed to examine the genetic variation and spatial distribution of this species in a community-owned forest (Barus) and two natural forests (Singkohor and Danau Paris) in Indonesia using the Random Amplified Polymorphic DNA marker. The results of this study showed that D. aromatica had moderate levels of genetic variation (expected heterozygosity [He] = 0.1760 [Barus population] to 0.2134 [Singkohor population]) and genetic differentiation (Nei’s Gst = 0.1257). The genetic distance was the smallest between the Singkohor and Danau Paris populations (Nei’s distance = 0.0363) and greatest between the Singkohor and Barus populations (Nei’s distance = 0.0534). The spatial distribution of D. aromatica was grouped in both Barus and Danau Paris based on Morisita’s index of diversity (ip = 0.06 and 0.043, respectively). These findings indicated that genetic conservation might be performed in situ in combination with enrichment planting using locally propagated sources.
Antimicrobial activities of actinomycete isolates from rhizospheric soils in different mangrove forests of Torosiaje, Gorontalo, Indonesia YULIANA RETNOWATI; SUKARTI MOELJOPAWIRO; TJUT SUGANDAWATY DJOHAN; ENDANG SUTARININGSIH SOETARTO
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190627

Abstract

Retnowati Y, Moeljopawiro S, Djohan TjS, Soetarto ES. 2018. Antimicrobial activities of actinomycetes isolates from rhizospheric soil on different mangrove forests of Torosiaje, Gorontalo, Indonesia. Biodiversitas 19: 2196-2203. Mangrove forests are very productive ecosystems that form unique saline environment very rich in organic matter, containing nitrogen and sulfur available for microorganisms. Mangrove forest as an extreme environment is promising to be sources of antibiotic-producing actinomycetes. The objectives of this study were to analyze the antimicrobial activities of metabolites produced by actinomycete isolates from rhizospheric soil of mangrove forest of Torosiaje, Gorontalo, Indonesia, and identify the active compound for novel antibiotics production. Six isolates from a coastal mangrove forest was selected to produce secondary metabolite. The crude extract of the six selected actinomycete isolates showed antimicrobial activities against pathogenic microbes; the highest antimicrobial activities was indicated by metabolite produced by FUAm2-h1 and FMBg2-x3 isolates. The metabolite crude extracts produced by two potential isolates inhibited growth of pathogenic microbe on MIC value of 0.0625 to 0.5mgmL-1. Bio-autography assay detected an active compound on Rf value of 0.94, especially on extracellular metabolite produced by strain FUAm2-h1. The bioactive compounds were identified by liquid chromatography joined with low-resolution mass spectroscopy (LC/MS) and analysed by MEDINA's database The active compounds composed of 17 substances, and only 3 substances showed a high quantity with molecular weight of 507.37, 344.32 and 563.66 mol G-1, respectively. FTIR analyses identified the functional groups in the active compounds consisted of amide, amine, alkuna, alkane, NO2 nitro compound, alcohol, ether, carboxylic acid, ester and C-H aromatic ring. The biosynthesis of antibiotic on FUAm2-h1 and FMBg2-x3 isolates was regulated by double genes, i.e., PKS-II and NRPS genes. The antimicrobial activities of two actinomycete isolates showed the performance of antibiotics suspected as aromatics polyketides group. The FUAm2-h1 and FMBg2-x3 isolates showed high similarity with Streptomyces qinglanensis strain 172205 and Streptomyces sanyensis strain 219820, respectively, in terms of 16S rRNA gene sequences. The potential of those selected actinomycetes from extreme environments of mangrove forest constitute a source of promising actinomycete strains producing biologically active secondary metabolites.
Diversity of medicinal plants and their uses by the Sanger tribe of Sangihe Islands, North Sulawesi, Indonesia DINGSE PANDIANGAN; MARINA SILALAHI; FARHA DAPAS; FEBBY KANDAU
Biodiversitas Journal of Biological Diversity Vol. 20 No. 3 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200301

Abstract

Abstract. Pandiangan D, Silalahi M, Dapas F, Kandou F. 2019. Diversity of medicinal plants and their uses by the Sanger tribe of Sangihe Islands, North Sulawesi, Indonesia. Biodiversitas 20: 621-631. The Sanger tribe is an indigenous tribe in Sangihe Islands, North Sulawesi, who still continue to use traditional medicinal plants. The objectives of this study were to document the diversity of medicinal plants and their general uses by the Sanger tribe in the selected villages of Sangihe Islands and to identify plants that have anti-cancer potential. The study was conducted with ethnobotanical approach using survey and interviews among 90 respondents selected from 9 study villages located in 3 sub-districts of Sangihe Islands. The study showed that 118 species of medicinal plants belonging to 47 families had been used by the Sanger tribe to treat 39 different types of diseases. Thirteen (13) species each were used for treating fever and ulcers, 12 species in the treatment of poisoning, 10 species each for cough and kidney diseases, 8 species for each of the diabetes mellitus and cancer or tumors, and 7 species each for itching, hypertension, physical injury and blood circulation disorders. For other diseases, the number of plant species used as medicines varied from 1 to 6. Leaves were the most predominantly used part for medicinal purposes as this was used in case of 73 species, followed by stems (37 species), roots (29 species), flowers (25 species), fruits (20 species) and seeds (17 species). Twenty percent (20% of the recorded medicinal plants were consumed directly and others after different methods of processing and preparation, such as boiling (51%), crushing (15%), roasting (2%), soaking (16%) and pasting (7%), and a species can be used more once. A utilization of Dischidia nythesiana as medicines for cancer/tumor by the Sanger tribe has not been reported before.
Planting coffee and take care of forest: A case study on coffee cultivation in the forest carried out among people of Palintang, Highland of Bandung, West Java, Indonesia BUDIAWATI SUPANGKAT ISKANDAR; JOHAN ISKANDAR; RUHYAT PARTASASMITA; RAHMAN LATIF ALFIAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190626

Abstract

Iskandar BS, Iskandar J, Partasasmita R, Alfian RL. 2018. Planting coffee and take care of forest: A case study on coffee cultivation in the forest carried out among people of Palintang, Highland of Bandung, West Java, Indonesia. Biodiversitas 19: 2183-2195. People of Palintang hamlet of highland of Bandung, West Java have interacted with the forest ecosystem for a long time. In the past, initially, they cultivated forest by practicing swidden farming system (ngahuma) based on the traditional ecological knowledge which strongly embedded with local culture. During the Dutch colonial, some people of Palintang involved as the laborer of various activities of the culture system in the forest. After Indonesian independence, Palintang people have participated as laborers in various activities in the mixed-cropping (tumpangsari) program of the Forestry Service (Dinas Kehutan) and later on the State Forestry Corporation (Perhutani). In 1983, the tumpangsari program was formally prohibited because of its potency to cause environmental destructions, but some people of Palintang have continuously planted vegetables in the forest to get household income. Although the cultivation of vegetables in the forest provided some economic benefits, however, some forest destruction and environmental destructions, including soil erosion, landslide, pesticide pollution have not been inevitable. In 2005 Perhutani launched the management of forest resources together with the community (PHBM=Pengelolaan Sumber Daya Hutan Bersama Masyarakat), mainly by introducing Arabica coffee (Coffea arabica L) to be planted in the pine (Pinus merkusii Jungh) forest to replace the farming of vegetables in the forest. This paper elucidates the historical process of introduction of Arabica coffee in the pine forest of Palintang through the PHBM program of Perhutani. The method used in this study was qualitative with descriptive analysis. Some techniques, namely observation, semi-structured interview, and participant observation were applied in this study. The result of the study showed that the introduction of coffee had been adopted by rural people of Palintang through a long time process with learning by doing. It was revealed that several factors caused the residents accepting coffee plants to be cultivated on forest land, i.e., coffee plants were only once planted in the past in their area, and the area is suitable for coffee cultivation. Besides, coffee has been considered to be planted and give economic benefits; and was initially planted in combination with annual crops, including vegetables, so that before the coffee is produced, the rural people can still produce annual agricultural products such as vegetable crops. However, when the coffee started to produce, time allocation, labor, and capital were more emphasized on the cultivation of coffee instead of vegetable crops; thus, cultivation of vegetables is gradually reduced and even stopped. The forest ecosystem of Palintang can be utilized and maintained by the rural community as indicated by their perception of the forest ecosystem. Thus, people of Palintang have increased awareness that they want to protect forest areas after their coffee cultivation in the forest area provides economic benefits to them.
Bird diversity in transition zone of Taka Bonerate, Kepulauan Selayar Biosphere Reserve, Indonesia RADISTI A PRAPTIWI; RONNA SAAB; TATANG MITRA SETIA; GUSTI WICAKSONO; PRAWESTI WULANDARI; JITO SUGARDJITO
Biodiversitas Journal of Biological Diversity Vol. 20 No. 3 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200327

Abstract

Abstract. Praptiwi RA, Saab R, Setia TM, Wicaksono G, Wulandari P, Sugardjito J. 2019. Bird diversity in transition zone of Taka Bonerate, Kepulauan Selayar Biosphere Reserve, Indonesia. Biodiversitas 20: 819-823.   Conservation management in the buffer and transition zones of Biosphere Reserves play an important role in ensuring enhanced core zone protection. Tambolongan and Polassi are two islands located in the administrative region of South Sulawesi, Indonesia, and part of the transition zone area of UNESCO’s Taka Bonerate-Kepulauan Selayar (TBKS) Biosphere Reserve (BR). These two islands can be considered as some of the most populated islands in the region, containing a variety of human activities. These human activities, such as the ever expanding agriculture and the building of human habitation have put pressures toward ecosystem and species conservation in the BR. Bird are often the focus of conservation efforts, due to their roles in supporting the ecological functioning of their habitats. This study aims to provide baseline data of bird diversity in Tambolongan and Polassi that can be used as a proxy indicator of ecosystem health and input to conservation strategies within the BR area. A Visual Encounter Survey (VES) method is used to examine bird diversity index. Results from the observation recorded a total of 29 species were found in both islands, with 5 listed as protected species and 3 categorized as migratory species. The comparison between the two islands showed that the bird diversity index (H’) differs only slightly (H’Tambolongan=2.98; H’Polassi=2.71). This study provided the initial attempt in understanding the role of habitats or land cover types, guild types and human interferences in determining the diversity of bird population - and related ecosystem health - in the area. Such knowledge is essential in providing the information necessary for sustainable management practices. This work represents the first study to inventorize avian species diversity in the transition zone of TBKS BR.

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