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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Short Communication: Estimation of the above- and below-ground carbon stocks in University of Lampung, Indonesia IRWAN SUKRI BANUWA; RIZKI AFRILIYANTI; MUHAJIR UTOMO; SRI YUSNAINI; MELYA RINIARTI; PURBA SANJAYA; ERDI SUROSO; WAHYU HIDAYAT
Biodiversitas Journal of Biological Diversity Vol. 20 No. 3 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200309

Abstract

Abstract. Banuwa IS, Afriliyanti R, Utomo M, Yusnaini S, Riniarti M, Sanjaya P, Suroso E, Hidayat W. 2019. Short Communication: Estimation of the above- and below-ground carbon stocks in University of Lampung, Indonesia. Biodiversitas 20: 676-681. University of Lampung in Indonesia has been promoting green campus program since 2004 to meet environmental goals, including specific targets for energy and CO2 reductions. This study was conducted to establish baseline data on the carbon stock and carbon sequestered in the campus of University of Lampung in order to support the program. The above-ground carbon stocks were estimated from tree biomass, understory biomass, and litters, while under-ground carbon stocks were measured by determining the organic carbon in soil. The results showed that the average above-ground carbon stock was 35.65 t.ha-1, consisted of 35.10 t.ha-1, 0.18 t.ha-1, and 0.12 t.ha-1 from trees biomass, understory biomass, and litters, respectively. The average below-ground carbon stock was 317.33 t.ha-1 and the CO2 uptake by plants was 130.74 t.ha-1. The Faculty of Agriculture with the largest area of green open space contributed to the highest carbon stocks and carbon sequestration, while the Faculty of Medicine showed the lowest values. The results could be essential to suggest the climate change mitigation effort, such as the expansion and optimization of green spaces area.
Diversity of uropathogenic Escherichia coli lytic phage from Cisadane River, West Java, Indonesia based on morphology and protein molecular weight characteristics HAFIZAH ILMI SUFA; SRI BUDIARTI; IMAN RUSMANA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190646

Abstract

Sufa HI, Budiarti S, Rusmana I. 2018. Diversity of uropathogenic Escherichia coli lytic phage from Cisadane River, West Java, Indonesia based on morphology and protein molecular weight characteristics. Biodiversitas 19: 2359-2364. The aimed of this study was to identify, isolate and characterized the lytic phage diversity which had a potential in reducing uropathogenic Escherichia coli (UPEC), antibiotic resistant-pathogenic bacteria infecting urinary tract from Cisadane river based on the morphology and protein molecule weight. To the best of our knowledge, this study has not yet been reported in Indonesia. Two novel lytic phages of UPEC, FU1, and FU3 were isolated from Cisadane River, Indonesia. Both of lytic phages were more closely related to Podoviridae, which had icosahedral capsid in 47.2 nm and 40 nm diameter length, respectively and short-noncontractile tail (< 40 nm). The FU1 and FU3 had different protein molecular weight ranges between 10-76 kDa and 8-120 kDa, respectively. In addition, the bacteriolytic activity of FU3 (1.6 ´ 107 PFU/mL) was able to reduce UPEC (1.7 ´ 107 CFU/mL) to become lower than the limitation value of infection (< 105 CFU/mL) in only 25 h of incubation. A better effect of FU3 phage in decreasing UPEC population in vitro is expected to be one of the further alternative biocontrol agents to reduce the abundance of UPEC population which grows in urinary tract or contaminates river water.
Entomopathogenic fungi of soils of freshwater swamps, tidal lowlands, peatlands, and highlands of South Sumatra, Indonesia AYU SAFITRI; SITI HERLINDA; ARUM SETIAWAN
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190647

Abstract

Safitri A, Herlinda S, Setiawan A. 2018. Entomopathogenic fungi of soils of freshwater swamps, tidal lowlands, peatlands, and highlands of South Sumatra, Indonesia. Biodiversitas 19: 2365-2373. Ecosystems of lowlands and highlands in South Sumatra have specific characteristics of soils and vegetations that can affect the availability of entomopathogenic fungi. This study aimed to explore and identify species and to determine inoculum potentials of the entomopathogenic fungi from soils of freshwater swamps, tidal lowlands, peatlands, and highlands. Baiting of entomopathogenic fungi on soil samples used the larvae of Tenebrio molitor. The entomopathogenic fungi species found in this research were Beauveria bassiana and Metarhizium anisopliae. The number of the fungal isolates were 30 isolates consisting of nine isolates of B. bassiana and 21 isolates of M. anisopliae.The highest number of isolates was found in the highland ecosystem (11 isolates) and the lowest was found in peatland ecosystem (4 isolates). The highest percentage average of inoculum potentials of the fungi was found in the high land ecosystem (4.04%) and the lowest one was found in freshwater swamps ecosystem (2.11%). Based on the vegetation type, the soil planted with mustard in Talang Patai-Pagaralam (highland ecosystem) had the highest inoculum potentials (9.33%). These fungi will make an important contribution to the biological control for insect pests in lowland to highland ecosystems in Indonesia.
Short Communication: Detection of lectin gene (MLL1 and M35) in mulberry plant (Morus spp.) from Bogor, West Java, Indonesia YASINTA RATNA ESTI WULANDARI; YOGIARA YOGIARA; MICHAEL LIZAR
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190649

Abstract

Wulandari YRE, Yogiara, Lizar M. 2018. Short Communication: Detection of lectin gene (MLL1 and M35) in mulberry plant (Morus spp.) from Bogor, West Java, Indonesia Biodiversitas 19: 2381-2384. Plant species contains carbohydrate-binding protein known as lectin or agglutinin. Lectin binds to specific carbohydrates, such as monosaccharides or oligosaccharides and initiates agglutination process. Lectin plays an important role as plant defense, so that it can be used to prevent pest attacks. Mulberry leaf lectin 1 (MLL1) from young leaves of Morus alba can be used against phytopathogenic bacteria, Pseudomonas syringae pv. mori. Mannose-binding lectin (M35) was found on stems of M. nigra as protein storage. M35 is also produced on roots of M. alba and induced by mulberry stem cuttings. This research purpose was to isolate and analyze lectin gene expression (MLL1 and M35) in M. alba var. multicaulis, M. cathayana, M. bombycis var. lembang, and M. alba var. kanva-2 from Bogor, West Java, Indonesia. Different plant organ including leaves, stems, and roots were used as source of samples and analyze using Reverse Transcription Polymerase Chain Reaction (RT-PCR). Our results showed that all of MLL1 genes were expressed in young leaves, but not expressed in stems and roots of mulberry plant samples. The M35 gene was expressed in young leaves, stems, and roots of all mulberry plant samples. Reverse Transcription PCR of MLL1 gene exhibited a 350 bp DNA band, while M35 gene exhibited a 99 bp DNA band.
Genetic diversity analysis of daluga (Cyrtosperma merkusii) using Sequence-Related Amplified Polymorphism in Siau, Sangihe and Talaud Islands, North Sulawesi, Indonesia INA ERLINAWATI; ABINAWANTO ABINAWANTO; ANDI SALAMAH; RUGAYAH RUGAYAH
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190648

Abstract

Erlinawati I, Abinawanto, Salamah A, Rugayah. 2018. Genetic diversity analysis of daluga (Cyrtosperma merkusii) using Sequence-Related Amplified Polymorphism in Siau, Sangihe and Talaud Islands, North Sulawesi, Indonesia. Biodiversitas 19: 2374-2380. Daluga or the giant swamp taro (Cyrtosperma merkusii (Hassk.) Schott, a member of Araceae, is one of the minor tuber crops in Indonesia. It has high nutritional value for alternative food. Sequences-Related Amplified Polymorphism (SRAP) primers combinations were used for the first time to assess the genetic diversity among 36 of daluga accessions from several locations in Siau, Sangihe and Talaud islands, North Sulawesi, Indonesia. All of the samples were successfully extracted from silica-gel dried leaves using CTAB methods with minor modifications. Using six SRAP primer combinations, a total of 80 DNA fragments were yielded, varied from 75-1500 bp. The scoring of the fragments resulted in 68 (85.03%) polymorphic bands. Amongst four populations studied, Siau Island population has the highest level of genetic variation with mean values of Na = 1.9375±0.2436, Ne = 1.6409 ± 0.3255, PPL = 93.75%, H = 0.3614 ± 0.1516 and I = 0.5299 ± 0.1978. Meanwhile, Salibabu, Talaud Island population has the lowest level of genetic variation with mean values of Na = 1.5125 ± 0.5030, Ne = 1.3075 ± 0.3723 , PPL = 51.25%, H = 0.1800 ± 0.1989 and I = 0.2700 ± 0.2855. The high of polymorphic bands were generated by SRAP markers suitable for further analysis method in applied and basic of the genetic study on Cyrtosperma species and also related genera. This new genetic information can be used for baseline data for further research especially to improving the variation of daluga and for the conservation of daluga in the future.
Genetic diversity and indirect selection of fine cacao (Theobroma cacao) based on bean color LUKITA DEVY; INDAH ANITA-SARI; AGUNG WAHYU SUSILO; ADE WACHJAR; SOBIR SOBIR
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190650

Abstract

Devy L, Anita-Sari I, Susilo AW, Wachjar A, Sobir. 2018. Genetic diversity and indirect selection of fine cacao (Theobroma cacao) based on bean color. Biodiversitas 19: 2385-2392. Specialty fine cacaos performed higher price than the bulk thereby the breeding of fine cacao clones become essential. However as perennial tree, cacao clones will be delivered in 15-20 years. Therefore, early detection marker and genetic diversity information will support the fine cacao breeding program. This study aimed to determine genetic parameters and early selection marker of leave flush trait to differentiate fine and bulk cacaos based on white bean percentage/pod (WBP). The research was conducted on 4 fine and 4 bulk cacao clones in two seasons with different rainfall intensities. Observations performed on WBP, flush color (L*, a*, b*, C*, Ho), anthocyanin content (A), SPAD value (S), A/S and S/A. Analysis of variance and T-test result showed that b* and C* were able to differentiate fine from bulk cacaos and stable in two seasons. Almost all traits showed narrow genetic variability except WBP. However, three of them showed high heritability. Traits correlated with WBP were L*, a*, b*, C* and anthocyanin content. However, the trait with high heritability, stable in two seasons, performed differently in two cacao types based on T-test and showing high direct correlation with WBP was only b* (yellow color). Fine cacao showed higher b* than the bulk. Therefore b* of the flush could be considered as a selection marker of fine cacao.
The sufficiency of existed protected areas in conserving the habitat of proboscis monkey (Nasalis larvatus) WARDATUTTHOYYIBAH WARDATUTTHOYYIBAH; SATYAWAN PUDYATMOKO; SENA ADI SUBRATA; MUHAMMAD ALI IMRON
Biodiversitas Journal of Biological Diversity Vol. 20 No. 1 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200101

Abstract

Wardatutthoyyibah, Pudyatmoko S, Subrata SA, Imron MA. 2019. The sufficiency of existed protected areas in conserving the habitat of proboscis monkey (Nasalis larvatus). Biodiversitas 20: 1-10. Proboscis monkey (Nasalis larvatus) is an endemic species on the island of Borneo. Their population size progressively decreased because they are very sensitive to any habitat destruction and human activity. The population of proboscis monkey in 2008 was estimated at only approximately 25,000 in total, of which only 5,000 within the conservation areas. However so, the continuation of habitat degradation is hardly prevented in non-protected areas. To solve the problem, the Indonesian government commits to increase the population of the proboscis monkey, particularly outside the protected areas. To support this goal, the distribution data of N. larvatus for conservation planning has become necessary. This study aims to build predictive models of the N. larvatus in Kalimantan and to measure how big the overlap between the habitat and the land use activity (protected areas, concession areas, plantation, and agriculture areas). The study used the Species Distribution Modelling (SDM) approach and Maximum Entropy (MaxEnt) software. We collected recent data from N. larvatus and a number of environmental variables. The result shows that only 5% of the total of Kalimantan area is suitable for their habitat. The overlap between N. larvatus distribution, land use, and land cover map reveals that only 9% of the distribution lies in protected areas, while 37% lies in concession areas and 27% lies in agriculture and plantations areas. We discuss the spatial distribution of the model and current situation of the land use policy in Kalimantan to provide scientific guidance for the Indonesian government to make a master plan for conserving endangered species N. larvatus.
Short Communication: The prevalence and species of root-knot nematode which infect on potato seed in Central Java, Indonesia MUTALA’LIAH MUTALA’LIAH; SIWI INDARTI; ARIF WIBOWO
Biodiversitas Journal of Biological Diversity Vol. 20 No. 1 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200102

Abstract

Mutala’liah, Indarti S , Wibowo A. 2019. Short Communication: The prevalence and species of root-knot nematode which infect on potato seed in Central Java, Indonesia. Biodiversitas 20: 11-16. Root-knot nematodes are considered as one of the most destructive pathogens of potatoes, especially on tuber seed. Infected potato seed will cause tuber malformation and the most important thing is as the main spreading source of Meloidogyne spp. The objective of this research was to know the prevalence and identify the species of root-knot nematode which attack the potato seed in four sub-districts of potato production centre in Central Java, Indonesia. Molecular and morphological identification was conducted for the nematode species identification. PCR assay using MIG primer to detect three tropical root-knot nematodes followed by sequencing was conducted for molecular detection, while the perennial pattern was conducted for morphological detection. Results showed that root-knot nematodes on potato seed were generally distributed in Central Java with the prevalence percentage between 14.28-88.23% on the three from four sampling area. The molecular and morphological identification show that species of root-knot nematodes identified on potato seeds were Meloidogyne javanica, M. incognita, and M. arenaria.
Short Communication: Genetic diversity and phylogenetic analysis of two Indonesian local cattle breeds based on cytochrome b gene sequences TETY HARTATIK; DWI NUR HAPPY HARIYONO; YUDI ADINATA
Biodiversitas Journal of Biological Diversity Vol. 20 No. 1 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200103

Abstract

Hartatik T, Hariyono DNH, Adinata Y. 2019. Genetic diversity and phylogenetic analysis of two Indonesian local cattle breeds based on cytochrome b gene sequences. Biodiversitas 20: 17-22. Genetic diversity and phylogenetic relationships of two Indonesian local cattle breeds (Pasundan and Pacitan cattle) were investigated using mitochondrial DNA (mtDNA) cytochrome b (cyt b) gene analysis. Partial sequences of cyt b gene, 404 bp in length, were determined for 21 individuals from the two breeds. Genetic diversity of the breeds was assessed based on the number of polymorphic sites, number of haplotypes, haplotype diversity, nucleotide diversity and average number of differences. In addition, a neighbour-joining (NJ) haplotype tree was constructed based on Kimura’s two-parameter model. Among the two breeds, haplotype and nucleotide diversity of Pacitan cattle were the highest with values of 0.3778 and 0.00099, respectively. In contrast, Pasundan cattle had the lowest value for haplotype (0.1818) and nucleotide (0.00045) diversity. Four haplotypes (Hap_16, Hap_17, Hap_18 and Hap_19) were found across the two breeds and around 85.71% of investigated individuals were classified as Hap_16. Phylogenetic analysis with the inclusion of the cyt b sequences from 39 cattle breeds from Genbank database, showed that Indonesian cattle made a separated lineage together with Bos javanicus, B. bison, and B. bonasus. Pasundan and Pacitan cattle were considered from the same lineage based on haplotype distribution as well as phylogenetic analysis. This study may help the future researchers and livestock breeders for designing a breeding program based on a better understanding of the genetic diversity and history of local breeds.
Short Communication: The study of suweg (Amorphophallus paeoniifolius) and other undergrowth species in teak plantation forest of Temengeng, Blora, Indonesia SYAMSUL HIDAYAT
Biodiversitas Journal of Biological Diversity Vol. 20 No. 1 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200105

Abstract

Hidayat S. 2019. The study of suweg (Amorphophallus paeoniifolius) and other undergrowth species in teak plantation forest of Temengeng, Blora, Indonesia. Biodiversitas 20: 37-42. Suweg (Amorphophallus paeoniifolius (Dennst.) Nicolson) is one of the potential sources of food plants that are often found growing wild in farmers' gardens or fields. In the teak plantation forest of Cepu, precisely in Temengeng village, there are many suwegs growing among the old and big teak trees. To find out the potential and range of habitat where suweg grows, especially in teak plantation forest, ten observation plots were made using purposive sampling method, each measuring 10 x 10 m2. Overall, 17 adults and 30 young individuals of suweg were found. In addition to teak, 43 wild plant species were identified alongside suweg, from various habits, namely herb, liana, shrub, epiphyte, and tree. Herbs were the most common plants growing around suweg, especially from the families of Fabaceae, Compositae, and Zingiberaceae. The species that were almost always found together in the suweg plots were Tetrastigma lanceolarium (Roxb.) Planch. and Thespesia lampas (Cav.) Dalzell, but in quantity, Costus spiralis (Jacq.) Roscoe was more abundant than the other two species, although it was only found in four sampling plots. The results of this study also showed that there was no association between suweg and certain plants; this was supported by the low similarity index among plots.

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