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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,315 Documents
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RP-HPLC based analysis of different polyphenols in seven species of Carex L. (Cyperaceae Juss.) from West Bengal, India POOJA RAJAK; ASOK GHOSH
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230511

Abstract

Abstract. Rajak P, Ghosh A. 2022. RP-HPLC based analysis of different polyphenols in seven species of Carex L. (Cyperaceae Juss.) from West Bengal, India. Biodiversitas 23: 2329-2341. Carex L. is one of the important genera of the family Cyperaceae having immense ecological significance and probable therapeutic potentiality due to the presence of bioactive phytochemicals i.e. polyphenols. RP-HPLC (reversed-phase high-performance liquid chromatography) based evaluation of polyphenols concerned with the chemotaxonomy of this genus, was a fundament of reported research but the evaluation of its therapeutic possibilities are still an open field of research. In concerned with the above aim, phytochemical investigation was done by analyzing the seven species of Indian Carexto to evaluate polyphenols employing RP-HPLC. The above-mentioned analysis reveals differences in the presence as well as the amount of these marker phytochemical components compositions of each and every studied species of Carex. Total of nine polyphenols was used as standard among which, except coumaric acid, all of the polyphenols were detected in considerable amount in the studied species. Among these seven species, Carex stramentitia Boott ex Boeckeler and C. alopecuroides D. Don were found to contain a higher number of polyphenols. Gallic acid was quantified in the highest amount in C. baccans Nees. A higher amount of phloroglucinol was also detected in C. insignis Boott and C. baccans. Remarkably, biochanin A, a highly significant therapeutic phytochemical, was only observed in higher amounts in C. alopecuroides.
Morphological and molecular characterization of Distichochlamys citrea M.F. Newman in Bach Ma National Park, Thua Thien Hue Province, Vietnam TRAN VAN CHEN; NGUYEN DUC TUAN; NGUYEN THANH TRIET; NGUYEN HOANG AN; PHAN THI THAO NGUYEN; NGUYEN THI THANH HAI; NGUYEN THANH TO NHI; NGUYEN QUANG CO; HO THI HOANG NHI; HOANG VIET HUONG; TRUONG THI BICH PHUONG; NGUYEN THI AI NHUNG
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230442

Abstract

Abstract. Chen TV, Tuan ND, Triet NT, An NH, Nguyen PTT, Hai NTT, Nhi NTT, Co NQ, Nhi HTH, Huong HV, Phuong TTB, Nhung NTA. 2022. Morphological and molecular characterization of Distichochlamys citrea M.F. Newman in Bach Ma National Park, Thua Thien Hue Province, Vietnam. Biodiversitas 23: 2066-2079. Distichochlamys citrea (Black Ginger or gung den) is a medicinal plant endemic to Vietnam. However, this species is not easily identified due to the lack of a detailed description. Therefore, this study aimed to characterize morphological and molecular aspects of D. citrea from Bach Ma National Park, Vietnam. Six representative plants were selected for the following analyses. Macromorphological features were observed and compared with previous studies. The rhizomes, roots, petioles, and leaves were then histologically analyzed using iodine green-carmine staining. The ground rhizomes and leaves were also microscopically examined for powder characteristics. Finally, the D. citrea DNA barcode was amplified by Internal Transcribe Spacer (ITS) primers. Macromorphologically, D. citrea differs from other Distichochlamys species. Black Ginger, particularly, has elongated rhizomes (with scars from the shoots of previous years), green leaves, spread inflorescences, and yellow labellum (with deep slits). Additionally, D. citrea’s micromorphological structures (epidermis, exodermis, hypodermis, cortex, endodermis, and root pith) are similar to the genus Zingiber. However, the absence of calcium oxalate and silica crystals in the root is unique and can be used to distinguish this plant from other Zingiberaceae members. The sequenced amplicons (96.54% similar to Genbank's D. citrea ITS) demonstrated the ITS marker’s ability to identify Black Ginger.
Application of Lactobacillus inoculant from various rice paddy (Oryza sativa) to total mixed ration silage microbial composition AHMAD WAHYUDI; LISTIARI HENDRANINGSIH; SUTAWI SUTAWI; DEVI DWI SISKAWARDANI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 7 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230710

Abstract

Abstract. Wahyudi A, Hendraningsih L, Sutawi S, Siskawardani DD. 2022. Application of Lactobacillus inoculant from various rice paddy (Oryza sativa) to total mixed ration silage microbial composition. Biodiversitas 23: xxxx. Evaluation of microorganisms profile of total mixed ration (TMR) silage inoculated with lactic acid bacteria (LAB) from local rice paddy (Oryza sativa L.) in tropical climate was analyzed to solve the feed management system. This study aimed to compare the effect of local LAB inoculants with commercial strain Lactobacillus plantarum FCC 123 on microorganisms composition of TMR silage in small-scale silage preparation. LAB was isolated from whole crop rice (w) and rice straw (s). Local rice paddy was planted in field around the University of Muhammadiyah Malang, East Java Province, Indonesia. Four rice paddy varieties: Membramo (M), Ciherang (C), Rajalele (R), and Impari (I) were utilized for isolation of LAB. Then, LAB was selected and purified in lactobacilli deMan Rogosa sharp agar (MRSA) and partially stored in dimethyl sulfoxide (DMSO) at -30°C as microbial stock. These selected LAB was used as inoculants at room temperature for 30 days TMR silage incubation. Completely randomized design (CRD) with 6 treatments (T0: TMR without fermentation, T1: TMR silage without inoculants, T2: TMR silage with L. plantarum FCC 123, T3: TMR with Local LAB Cs, T4: TMR silage with local LAB Mw, T5: TMR silage with local LAB Rs) were applied. Microorganism composition of LAB, aerobic bacteria, coliforms, clostridia, and mold was measured as experiment parameters. This research showed that LAB could be isolated and identified from all local paddy rice, both whole crop and straw. The implementation of local LAB on ensilage TMR was not significantly different from commercial L. plantarum FCC 123. Both local and commercial strains increased LAB population and suppressed harmful microbes (coliform, aerobic bacteria, and mold). The LAB isolates from local paddy rice could well act as an inoculant for TMR silage preparation in tropical climate.
Antimicrobial activity of nudibranch Chromodoris lineolata associated bacteria against skin diseases pathogens from Jepara Coastal Waters, Indonesia ALDI PRATAMA WIJAYA; AGUS SABDONO; MADA TRIANDALA SIBERO; AGUS TRIANTO; OCKY KARNA RADJASA
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230425

Abstract

Abstract. Wijaya AP, Sabdono A, Sibero MT, Trianto A, Radjasa OK. 2022. Antimicrobial activity of nudibranch Chromodoris lineolata associated bacteria against skin diseases pathogens from Jepara Coastal Waters, Indonesia. Biodiversitas 23: 1911-1919. The emergence of multidrug-resistant (MDR) skin pathogens has caused the treatment of skin diseases to become increasingly ineffective using by conventional antibiotics. As a source of antimicrobial compounds against MDR pathogens, marine invertebrate-associated bacteria have been widely known for their valuable biological activity. Therefore, this study aims to determine the antimicrobial activity of nudibranch Chromodoris lineolata associated bacteria against various skin pathogens and to detect the presence of biosynthetic gene clusters (BGC) through a molecular approach. A total of 14 nudibranch-associated bacteria were successfully isolated from Awur Bay and Panjang Island. Antimicrobial activity screening using the agar plug method indicated that three bacterial strains showed antimicrobial activity against two skin pathogens, Propionibacterium acnes and Malassezia furfur. Based on the biochemical test, these potential strains were classified into the Terrabacteria and Proteobacteria groups. Through 16S rRNA gene sequencing, potential strains were identified as Streptomyces lateritius, Labrenzia marina, and Halomonas meridiana through 16S rRNA gene sequencing. The results of BGC detection showed the presence of a type II polyketide synthase (PKS II) biosynthetic gene cluster in Streptomyces lateritius and Labrenzia marina strains at 600bp-650bp.
Two new taxa of Curcuma sect. Ecomata (Zingiberaceae: Zingibereae), from coastal Central Vietnam DANH DUC NGUYEN; TUAN ANH LE; QUOC HUY HOANG; QUOC THUONG LE; EMMY NGUYEN
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230531

Abstract

Abstract. Nguyen DD, Le TA, Hoang QH, Le QT, Nguyen E. 2022. Two new taxa of Curcuma sect. Ecomata (Zingiberaceae: Zingibereae), from coastal Central Vietnam. Biodiversitas 23: 2512-2519. Curcuma sixsensesensis and Curcuma vinhlinhensis, two new species belonging to subgenus Ecomata from Coastal Central Vietnam, are described and illustrated in the present articles. The C. sixsensesensis easily gets confused with C. newmanii Škorni?k. in compact rhizome; short lateral inflorescence composing of a few bracts; white corolla lobes and lateral staminodes; white labellum with a yellow mid-rid band but readily distinguished in rhomboid lateral staminodes (vs. obovate) with apex acuminated (vs. rounded); labellum 3-lobed (vs. emarginated), a mid-rid band being yellow at apex half, white at the base (vs. yellow throughout); anther crest presented (vs. reduced); oblong (lightly arching) (vs. L- shaped) anther in side view with slender and inward-pointing (vs. stout and outward-facing) spurs. The second one is similar to C. pambrosima Škorni?k. & N. S. Lý in general habit and shape of the spike but differs in reduced ligule ca. 1 (vs. 4-5) mm long; lateral staminodes orange throughout (vs. yellow at apex, white at base), elliptic with round apex (vs. unequally ovate-rhomboid with acute apex); anther spurs elongate into the acute apex, outward-facing (vs. curved inward), ca. 2-3 (vs. ca. 1,5) mm long, anther crest reduced, up to 0.5 mm, 2-lobed (vs. prominent anther crest, ca. 1.5 mm apex round). Data for each described species comprises standard citation of type specimens, description, proposed species epithet etymology, data on ecology and distribution, and short taxonomic notes and morphological comparison of these new species with its allies species, a revised key to species of Curcuma sect. Ecomata in Vietnam is included.
Bioclimatic modeling for the prediction of the suitable regional geographical distribution of selected bright-spored myxomycetes in the Philippine archipelago JAMES EDUARD LIMBO-DIZON; KING JOSHUA ALMADRONES-REYES; SITTIE AISHA B. MACABAGO; NIKKI HEHERSON A. DAGAMAC
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230506

Abstract

Abstract. Limbo-Dizon JE, Almadrones-Reyes KJ, Macabago SAB, Dagamac NHA. 2022. Bioclimatic modeling for the prediction of the suitable regional geographical distribution of selected bright-spored myxomycetes in the Philippine archipelago. Biodiversitas 23: 2285-2294. Myxomycetes communities in the Philippines have been well studied in terms of diversity patterns projected by their enigmatic fructifications. To predict potential suitable geographical distributions of three different bright-spored myxomycetes with known variations in its occurrences, namely, Arcyria cinerea, Perichaena depressa, and Hemitrichia serpula, species distribution modeling was utilized. Three different modeling approaches employing MaxEnt were performed in this study and have calculated high model performances based on the AUC values generated (0.778-0.873). In all of the modeling approaches, the three myxomycetes species were predicted to have an expansion of their localized fundamental niches pointing to the influence of isothermality (BIO3) as an important macroclimatic predictor for modeling approaches 1 and 2. Highly suitable habitats for the three bright-spored species were discovered primarily in terrestrial landscapes on the regions of Luzon Island, as well as in small parts of the Visayas and Mindanao Islands. The predicted models in this study do not tell missing geographical information but rather may use as tools for the exploration of potentialities, such as understanding the possible distribution patterns of the three bright-spored myxomycetes species in the Philippines. This can serve as a useful baseline to enhance the conservation efforts for most habitats in the country that are directly affecting microbial communities due to rampant habitat loss and rapid urbanization.
Wolbachia genetic similarity in different insect host species: Drosophila melanogaster and Yogyakarta’s (Indonesia) Aedes aegypti as a novel host ANWAR ROVIK; EDWIN WIDYANTO DANIWIJAYA; ENDAH SUPRIYATI; AYU RAHAYU; DIAN ARUNI KUMALAWATI; UTARI SARASWATI; ANASTASIA EVI HANDAYANINGSIH; MIFTA PRATIWI RACHMAN; RISKY OKTRIANI; IRIANTI KURNIASARI; DAMIANA SAPTA CANDRASARI; INDAH NURHAYATI; RIZKI SHOLEH; BUDI ARIANTO; WARSITO TANTOWIJOYO; RIRIS ANDONO AHMAD; ADI UTARINI; EGGI ARGUNI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230510

Abstract

Abstract. Rovik A, Daniwijaya EW, Supriyati E, Rahayu A, Kumalawati DA, Saraswati U, Handayaningsih AE, Rachman MP, Oktriani R, Kurniasari I, Candrasari DS, Nurhayati I, Sholeh R, Arianto B, Tantowijoyo W, Ahmad RA, Utarini A, Arguni E. 2022. Wolbachia genetic similarity in different insect host species: Drosophila melanogaster and Yogyakarta’s (Indonesia) Aedes aegypti as a novel host. Biodiversitas 23: 2321-2328. Wolbachia naturally presents in a large number of insects and other arthropod species. The Wolbachia strain wMel from Drosophila melanogaster has been stably transinfected into Aedes aegypti where it stops the mosquito host from being infected with medically important arbovirus like dengue. Consequently, Ae. aegypti infected with wMel have been released in Indonesia as a public health intervention against dengue. This study genetically compared wMel from Yogya field-caught D. melanogaster and the wMel in stably transfected Ae. aegypti used for field releases in Yogyakarta, Indonesia. The genetic similarity between wMel Wolbachia was evaluated by sequencing of Wolbachia surface protein (wsp) gene and some polymorphic genomic regions of insertion sites (IS) and variable number tandem repeats (VNTR) loci. The sequence of the Wolbachia surface protein (wsp) gene was 100% identical between hosts. There is no insertion sequence among specimens. The insertion sequence IS-WD1310 was identical between wMel from both hosts and among other strains, as well as the IS-WD516/7. The VNTR-141 period was identical within wMel from both hosts and among other strains, the VNTR-105 as well. Wolbachia Yogya field-caught D. melanogaster and Wolbachia strain wMel present in Ae. aegypti used for bio-control of dengue were genetically identical. These findings provide beneficial understanding to answer the public attention on safety issues, especially on the genetic similarity between Wolbachia strain in the natural and transfected hosts of this novel technology for dengue control.
Diversity, domination and behavior of mosquitoes in filariasis endemic area of Bogor District, West Java, Indonesia Muhammad Nirwan; Upik Kesumawati Hadi; Susi Soviana; Fadjar Satrija; Surachmi Setiyaningsih
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230444

Abstract

Abstract. Nirwan M, Hadi UK, Soviana S, Satrija F, Setiyaningsih S. 2022. Diversity, domination and behavior of mosquitoes in filariasis endemic area of Bogor District, West Java, Indonesia. Biodiversitas 23: 2093-2100. A study on the diversity, dominance and behavior of mosquitoes was done in the two filariasis endemic areas in Bogor District, West Java, Indonesia. The objectives of this study were to determine the diversity, dominance and behavior of mosquitoes and their importance as vectors of filariasis in two endemic areas in Bogor District, namely Tamansari Village (rural) and Cimanggis Village (urban). This research was carried out from September 2019 to February 2020. Mosquitoes were collected from 6.00 pm to 6.00 am, twice a month in each village, by using the bare leg collection technique. The collected mosquitoes were identified and analyzed. Filaria detection was carried out by dissecting technique and polymerase chain reaction (PCR). The result indicated eight (8) species of mosquitoes in the rural area (Tamansari village), i.e., Culex quinquefasciatus, Aedes aegypti, Cx. vishnui, Cx. tritaeniorhynchus, Armigeres kesseli, Ar. subalbatus, Ae. albopictus, Mansonia annulata. On the other hand, there were six (6) species found in the urban area (Cimanggis village), i.e., Cx. quinquefasciatus, Ae. aegypti, Ar. kesseli, Ar. subalbatus, Cx. vishnui, Cx. tritaeniorhynchus and Cx. quinquefasciatus were found to be the most dominant in Tamansari village (90.46) and also in Cimanggis Village (95.67). Based on the analysis showed that the mosquito diversity index was low in both the Tamansari village (H’: 0.444) and the Cimanggis village (H’: 0.238). In general, mosquito-biting behavior prefers to suck blood indoors (anthropophilic) with a peak density in the range of 23.00-04.00. The results of filarial detection using dissecting technique and PCR methods against mosquitoes caught in Tamansari Village and Cimanggis Village did not find any L3 larvae and microfilariae in the examined mosquitoes. Culex quinquefasciatus was found to be very potential as the main vector for the spread of filariasis both in rural and urban areas of endemic filariasis of Bogor District, Indonesia.
Phylogeography of Aplocheilus panchax in Indonesia, with special focus on the Bangka Island population Diah Mustikasari; Agus Nuryanto; Suhestri Suryaningsih
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230439

Abstract

Abstract. Mustikasari D, Nuryanto A, Suryaningsih S. 2022. Phylogeography of Aplocheilus panchax in Indonesia, with special focus on the Bangka Island population. Biodiversitas 23: 2035-2046. Previous studies divided Blue panchax, Aplocheilus panchax into three different clades, namely West (W), Central (C), and East (E) clades. Blue panchax populations from Indonesia belong to the Central and East clades. However, that study did not include blue panchax samples from pits with harsh conditions in Bangka Island, Indonesia. Therefore, this study aimed to assess the phylogeography of blue panchax in Indonesia with a special focus on the Bangka Island population using the cytochrome c oxidase 1 (COI) gene. The results showed that genetic distance within Bangka Island population was less than 2%, while genetic distances between Bangka population and other populations were ranged from 103.87% to 122.10%. There was also a clear genetic gap between the Bangka and other populations, with the minimum gap was 101.94%. Furthermore, the seventy-nine sequences analyzed resulted 28 haplotypes with genetic variability of 0.221 for nucleotide diversity (p), 0.923 for Haplotype diversity (Hd), 68.028 for Fu’s Fs-test, 2.00 (P < 0.02) for Fu and Li’s D-test, and 2.365 (P < 0.02) for Fu and Li’s F-test; and 1.927 for Tajima's D test (0.10 > P > 0.05). The Bangka population of Aplocheilus panchax established a distinct clade from the Western (W), Eastern (E), and Central (C) clades. Molecular data established that the population on Bangka Island is a novel clade for Indonesia and a global blue panchax phylogeographic.
Food traditions and biodiversity conservation of the Javanese Community in Gunungkidul Karst, Yogyakarta Province, Indonesia EKA SULISTIYOWATI; SETIADI SETIADI; EKO HARYONO
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230443

Abstract

Local traditions manifested through foods and rituals may have contributed to the conservation of plants. In this study, we explore how the Javanese community living in the dryland Karst Gunungkidul, Yogyakarta Province, uses food traditions and rituals to conserve plant diversity and, to some extent, conserve the ecosystem. The primary method was free listing interviews with 109 respondents, which was followed by in-depth interviews with 19 people of senior members of the community, local leaders (sesepuh), and customary leaders (juru kunci). The study found that there are 43 species of 19 families used by local people to produce ten culinary varieties as the local food traditions. In addition, 29 rituals involve the use of food traditions. Some rituals such as rasulan, gumregan, and life cycle rituals reflect local ecological knowledge to support biodiversity and ecosystem conservation in the area.

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