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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,315 Documents
 351   352   353   354   355 
Commercial marine fish species from Weh Island, Indonesia: Checklist, distribution pattern and conservation status Ilham Zulfahmi; Mauriza Apriansyah; Agung Setia Batubara; Neri Kautsari; Kizar Ahmed Sumon; Mohammad Mahmudur Rahman; Firman M Nur
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230432

Abstract

Abstract. Zulfahmi I, Apriansyah M, Batubara AS, Kautsari N, Sumon KA, Rahman MM, Nur FM. 2022. Commercial marine fish species from Weh Island, Indonesia: Checklist, distribution pattern and conservation status. Biodiversitas 23: 1977-1989. In this study, we first report a systematic checklist of commercial marine fish species from Weh Island, Indonesia, including notes on their distribution pattern, conservation status, and commercial value. Fish sampling was conducted at three major fish markets in Weh Island, and these specifically were Cangkoan Fish Market, Kuta Timu Fish Market, and Balohan Fish Market. A total of 50 fish species belonging to 8 orders and 24 families were documented. Carangidae (12%, 6 species) was the predominant family, followed by the Scaridae (10%, 5 species) and other families (78%, 22 families, 39 species). Based on the IUCN red list, commercial marine fish species in Weh Island were dominated by the "Least Concern" category (78%, 39 species), followed by the "Not Evaluated" (14%, 7 species), the "Near Threatened" (4%, 2 species), and the "Data Deficient" (4%, 2 species). The market price of the fish ranged from 0.34 USD/kg to 6.19 USD/kg, with three fish families included in the high commercial value, namely the Clupeidae, Carcharhinidae, and Serranidae.
Revealing herpetofauna diversity at Brantas River, East Java Indonesia: Evidence of decreasing populations Fatchur Rohman; Bagus Priambodo; Farid Akhsani; Sofia Ery Rahayu; Sansareeya Wangkulangkul; Maisuna Kundariati
Biodiversitas Journal of Biological Diversity Vol. 23 No. 3 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230335

Abstract

Abstract. Rohman F, Priambodo B, Akhsani F, Rahayu SE, Wangkulang S, Kundariati M. 2022. Revealing herpetofauna diversity at Brantas River, East Java, Indonesia: Evidence of decreasing populations. Biodiversitas 23: 1475-1481. Conservation planning is very important to preserve nature and ecosystems. Based on this, exploration and species inventory in nature need to be carried out. Group of animals that have an important role in the environment is herpetofauna. This study aims to reveal the abundance, evenness, and richness of herpetofauna in Brantas River's streams connection. This study uses the Visual Encounter Surveys (VES) sampling method at 8 points located in Blitar, Tulungagung, Malang, Mojokerto, Kediri, and Batu City, East Java, Indonesia. The results showed that the diversity index (H') 1 < 2, 3959 < 3, with the criteria for the diversity index being moderate. The value of e is 0.74 > 0.6, which means high species uniformity. Specific richness has a value of 4.53 which means in the moderate category. There were 12 species of amphibians and 14 reptile species. Five species are of low-risk status with decreasing population in nature and two species is of vulnerable status. Species in the declining category are Odorrana hosii, Limnonectes microdiscus Wijayarana masonii, Leptobrachium hasseltii, and Philautus aurifasciatus. Species in the vulnerable category are Microhyla orientalis and Gonocephalus kuhlii. Species in the declining category require attention from conservation efforts because their presence is important in various aspects of the ecosystem, such as the food chain, bioindicators, and natural enemies.
Short Communication: First report of Nectria haematococca causing a moler disease on shallots in West Nusa Tenggara, Indonesia MARIANI MARIANI; DEWA NGURAH SUPRAPTA; I MADE SUDANA; I GEDE RAI MAYA TEMAJA; I MADE SUDANTHA
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230559

Abstract

Abstract. Mariani, Suprapta DN, Sudana IM, Temaja IGRM, Sudantha IM. 2022. Short Communication: First report of Nectria haematococca causing a moler disease on shallots in West Nusa Tenggara, Indonesia. Biodiversitas 23: 2768-2774. Moler disease caused by Nectria haematococca is the main disease of shallots in West Nusa Tenggara, Indonesia. Moler disease caused significant yield loss and even crop failure. The purpose of this study was to isolate and identify the pathogen causing moler disease on shallots. This research was conducted from February 2018 to November 2019. Survey was conducted at 13 shallot planting locations in West Nusa Tenggara, namely: Ngali, Ncera, Cenggu, Renda, Sajang, Rensing, Dasan Baru, Batu Layar, Anyar, Sembalun, Jerowaru, Batujai and Sakuru Village. Ten infected plants were taken, at each observation point, then put in a labeled plastic bag and brought to the laboratory for isolation purposes. The results showed that pathogen causing moler disease on shallot was isolated NTB2018. On PDA isolate NTB2018 produced white color colony, the mycelium growth direction was sideways with smooth mycelium structure, sideways growth direction of mycelium and fine structure mycelium. The fungus produced insulated mycelium consisting of macroconidia and microconidia as asexual spores and ascospores as sexual spores. Based on analysis of 18S rRNA gene, isolate NTB2018 DNA fragment of ±569 bp.
Spatial distribution and temporal patterns of food tree availability of hornbills (Bucerotidae) at Way Canguk Research Station, Bukit Barisan Selatan National Park, Indonesia RIZKI AKBAR FITRIANSYAH; Agus Setiawan; ELLY LESTARI RUSTIATI; LAJI UTOYO; Marsya Christyanti Sibarani
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230433

Abstract

Abstract. Fitriansyah RA, Setiawan A, Rustiati EL, Utoyo L, Sibarani MC. 2022. Spatial distribution and temporal patterns of food tree availability of hornbills (Bucerotidae) at Way Canguk Research Station, Bukit Barisan Selatan National Park, Indonesia. Biodiversitas 23: 1990-1997. The presence of hornbills in an area is associated with food availability. As more food sources become available, the hornbill population in the area may increase. The purpose of this research was to determine the spatial distribution of hornbill food trees and to determine the long-term temporal fruiting pattern of hornbill food trees at Way Canguk Research Station (WCRS), Bukit Barisan Selatan National Park, Indonesia. We surveyed vegetation plots across the research station to assess the spatial distribution and analyzed long-term phenology survey data of the research station that have been collected from February 1998 to December 2020. We recorded 64 species of hornbill food trees with a total of 911 individuals in 197 of 200 survey plots. The temporal fruiting pattern of hornbill food trees during the last 22 years was relatively stable, with an average of fruiting tree percentage of 10.4% (SD: 3.2%, N: 260 months). The highest percentage of fruiting food trees occurred in September 2008, which amounted to 18.3% and the lowest percentage occurred in September 1998 with a percentage of 2.2%.
Variability total phenolic content and antioxidant activity of Curcuma zanthorrhiza and C. aeruginosa cultivated in three different locations in West Java, Indonesia SURYANI SURYANI; ASMAUL CHUSNA AL ANSHORY; MARLIN MARLIN; I MADE ARTIKA; LAKSMI AMBARSARI; Waras Nurcholis
Biodiversitas Journal of Biological Diversity Vol. 23 No. 4 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230434

Abstract

Abstract. Suryani, Al Anshory AC, Marlin, Artika IM, Ambarsari L, Nurcholis W. 2022. Variability total phenolic content and antioxidant activity of Curcuma zanthorrhiza and C. aeruginosa cultivated in three different locations in West Java, Indonesia. Biodiversitas 23: 1998-2003. Curcuma zanthorrhiza Roxb. and C. aeruginosa Roxb. are medicinal plants belonging to the Zingiberaceae family, which contained phenolic compounds. Phenolic is one of the antioxidant compounds. This study aimed to investigate variation on the total phenolic and antioxidant activity of three C. zanthorrhiza varieties and twenty C. aeruginosa genotypes cultivated in three different locations in West Java, Indonesia. Total phenolic content was determined using the Folin-Ciocalteu reagent, whereas antioxidant activity was used spectrophotometry using DPPH method. The total phenolic content ranged from 2.403 to 7.539 mg GAE/ g DW) differed significantly among the C. zanthorrhiza and C. aeruginosa varieties/genotypes, with the highest concentration found in the Cursina 3 variety of C. zanthorrhiza in Cianjur. The antioxidant activity ranged from 2.443 to 14.960 µmol TE/g DW, with the maximum activity identified in the Cursina 2 variety of C. zanthorrhiza in the Bogor location. G1, G6, G13, and G16 were identified as stable genotypes for phenolic antioxidant production. Three C. zanthorrhiza cultivars demonstrated higher total phenolic content and antioxidant activity than all C. aeruginosa genotypes in all planting areas. C. zanthorrhiza cultivars are the most promising source of phenolic content and antioxidant activity and are thus recommended for mass plantation at suitable locations in West Java, Indonesia to maximize potential.
Species density and morphometric variation of species belonging to Conus (Gastropoda: Conidae) genera in the coastal waters of Ambon Island, Indonesia LILIAN ANGRIANI TEBIARY; FREDY LEIWAKABESSY; DOMINGGUS RUMAHLATU
Biodiversitas Journal of Biological Diversity Vol. 23 No. 3 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230358

Abstract

Abstract. Tebiary LA, Leiwakabessy F, Rumahlatu D. 2022. Species density and morphometric variation of species belonging to Conus (Gastropoda: Conidae) genera in the coastal waters of Ambon Island, Indonesia. Biodiversitas 23: 1664-1676. Genus Conus Linnaeus, 1758 belongs to the class Gastropods, order Neogastropoda, family Conidae, and its presence in marine ecosystem is influenced by multiple environmental factors. Therefore, this study aims to determine the density and morphometric variations of Conus species in the coastal waters of Ambon Island, Indonesia. This study was carried out from March-April 2021 using the purposive sampling method. The environmental parameters: temperature, salinity, pH, and DO of seawater were measured in-situ, the Conus species were identified at the Central Marine Research Laboratory, the Indonesian Institute of Sciences (LIPI) Ambon, Indonesia while the density data and morphometric variation were determined quantitatively. The results of environmental physico-chemical parameters showed varying values; temperatures ranged from 25.00-29.50oC, salinity 34.00-35.00‰, pH 6.00-7.53, and dissolved oxygen (DO) 4.00-8.00 mg/L. Meanwhile, 7 Conus species was recorded with the density ranging from C. ebraeus with 0.16-0.18 ind/m2, C. rattus, C. sponsalis, and C. lividus ranging from 0.13-0.11 ind/m2, C. monachus, C. muriculatus, and C. coronatus ranging from 0.10 ind/m2. The results of morphometric measurements including shell length (SL), width (SW), thickness (ST), spire height (SH), shell aperture length (SAL), and aperture width (SAW) showed varying values, while the regression analysis results showed that there was a varied relationship between environmental physicochemical parameters and morphometric variations in Conus species. Furthermore, the physico-chemical parameters such as temperature and DO provided the most effective contribution to all morphometric variables.
Effects of plot size on assessment of tree species diversity in Caspian forests of Iran AMER MIRZAZADEH; HASSAN POURBABAEI; MEHRDAD GHODSKHAH DARYAEI; AMIRESLAM BONYAD
Biodiversitas Journal of Biological Diversity Vol. 23 No. 9 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230957

Abstract

Abstract. Mirzazadeh A, Pourbabaei H, Daryaei MG, Bonyad A. 2022. Effects of plot size on assessment of tree species diversity in Caspian forests of Iran. Biodiversitas 23: 4879-4886. Tree species diversity is important to forest managers because any management that reduces tree species diversity may greatly reduce commercial benefits. Therefore, control over tree species diversity is an important aspect of hardwood forest management. An efficient and quick survey method is needed to facilitate the assessment of tree species diversity in forest stands. In this study, the effects of plot size on the assessment of tree species diversity were compared in the uneven-aged hardwood stands in the Hyrcanian forests of Iran. There were selected 50 hectares of these forests representing the regional forests. Sampling procedures were carried out on concentric lozenge plots with different sizes, including 400, 800, 1000, 1200, 1600, 2000, 2500, and 5000 m2 in the dimensions of 150×150m. For each plot, the type of the species and the number of trees were recorded. Shannon-Wiener (H’), Simpson (1-D), Mc-Arthur (N1), Hill (N2), Camargo (E'), Simpson (E1/D), Nee (EQ), Smith-Wilson (Evar), Menhinick (R2), Margalef (R1) indices were used to estimate of tree species biodiversity. The precision and cost criteria (E%2× T) were applied for a better evaluation of different plot sizes. The obtained inventory error values showed that Hill (diversity), Camargo (evenness) and Menhinick (richness) indices had the lowest inventory error in the different plot sizes. Also, the lowest value of inventory error in diversity, evenness and richness indices were related to plot sizes of 2500, 5000, and 5000 m2, respectively. Based on the obtained results of diversity and evenness indices, there was a significant difference between the different plot sizes and different indices. The results showed that the lowest value of E%2×T for diversity, evenness and richness was related to Hill (800 m2), Camargo (1000 m2), and Menhinick (400 m2). The finding results revealed that plot size had a significant effect on tree species’ evenness.
Reproductive aspects of javaen barb fish, Systomus orphoides in the initial domestication program Priyo Susatyo; Windiariani Lestari; SUGIHARTO SUGIHARTO; Titi Chasanah
Biodiversitas Journal of Biological Diversity Vol. 23 No. 3 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230340

Abstract

Abstract. Susatyo P, Lestari W, Sugiharto, Chasanah T. 2022. Reproductive aspects of javaen barb fish, Systomus orphoides in the initial domestication program. Biodiversitas 23: 1511-1519. The population of Javaen barb, Systomus orphoides (Valenciennes, 1842) in the Serayu River Central Java has declined, and domestication is one of the most critical conservation initiatives. This research aimed to evaluate the reproductive aspect of javaen barb, Systomus orphoides in an initial domestication program. Furthermore, fish samples were collected from the Serayu River and reared in traditional ponds. The bred broodstocks were injected with artificial hormones before spawning, and several reproductive aspects were measured and analyzed descriptively according to the literature. Fish specimens had gonadosomatic indexes ranging from 11±0.3% to 16.2±0.9%. The values represented all phases of oogenesis and spermatogenesis in females and males. The reproductive hormone titer consisted of 854.85-1058.06 pg/mL of 17ß estradiol, 0.29-0.72 ng/mL of progesterone, 10.87-15.68 mIU/mL of follicle-stimulating hormone, and 4.18-9.92 ng/mL of testosterone. These findings demonstrated that the Serayu River's wild Javaen barb population reached all reproductive phases and that broodstocks can be domesticated in the traditional pond.
Stygobiotic isopod Stenasellus sp. in Sarongge Jompong cave, Tasikmalaya karst area, Indonesia Isma Dwi Kurniawan; Cahyo Rahmadi; Rahmat Taufik Mustahiq Akbar; Tatag Bagus Putra Prakarsa
Biodiversitas Journal of Biological Diversity Vol. 23 No. 3 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230338

Abstract

Abstract. Kurniawan ID, Rahmadi C, Akbar RTM, Prakarsa TBP. 2022. Stygobiotic isopod Stenasellus sp. in Sarongge Jompong cave, Tasikmalaya karst area, Indonesia. Biodiversitas 23: 1495-1504. Stenasellus, a stygobiotic isopod, was first reported in Tasikmalaya karst by local cavers in 2018 in Sarongge Jompong Cave. This study aimed to investigate the population, activities, and habitat characteristics of Stenasellus sp. in Sarongge Jompong, Tasikmalaya karst area, Indonesia. Population and activities were recorded through direct intuitive search. We measured several important physicochemical parameters to study habitat characteristics. Statistical analyses-namely Non-metric Multi-dimensional Scaling and Detrended Correspondence Analysis-were conducted to understand the difference in water characteristics among microhabitats and the relation between water characteristics and population size. The results showed that the population was distributed in 4 microhabitats with the maximum observed individuals of 8. Several activities were successfully monitored, including crawling, resting, hiding in crevices, and moving to different locations through the water. All microhabitats were wet gours connected to small water currents located in the dark zone of the cave passage. Water characteristics of microhabitat site 1 were more similar to site 2 and the numbers of individuals in these sites were larger than sites 3 and 4. Among water parameters, resistivity showed the most robust relation with Stenasellus population in which both variables were positively correlated. This correlation indicated that Stenasellus sp. preferred microhabitats with less contamination. Intrinsic and extrinsic factors may potentially threaten the population. The potential threats and conservation challenges need to be identified and mitigated to reduce the risk of biodiversity loss to these isopods, mainly due to their small population size, specific microhabitat, and susceptibility to disturbance. Considering these factors, research on taxonomy will be essential for conservation efforts.
Molecular phylogeny of anchovy (Clupeiformes: Clupeidae) from southern waters of Lombok using mitochondrial DNA CO1 gene sequences H. MAHRUS; AGIL AL IDRUS; LALU ZULKIFLI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 5 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230522

Abstract

Abstract. Mahrus H, Idrus AA, Zulkifli L. 2022. Molecular phylogeny of anchovy (Clupeiformes: Clupeidae) from southern waters of Lombok using mitochondrial DNA CO1 gene sequences. Biodiversitas 23: 2433-2443. This study aimed to identify anchovy samples genetically and evaluate their phylogenetic relationship to anchovies using the CO1 genetics markers. Fragment amplification of COI gene anchovy used a pair of COI commercially available primer with a length amplicon of about 693 base pairs (bp), coding for 231 amino acids successfully. The reconstruction of the phylogenetic tree with the neighbor-joining (NJ) method using Kimura 2 Parameters (K2P) by employing a bootstrap of 1000 replications. The genetic distance analysis between 19 fishes species in different families and 13 species in the genera Spartelloides acceded from NCBI indicated the closest distance between anchovy samples from the southern waters of Lombok and Spratelloides delicatulus from Australia is 0.02. The comparisons results of homology with the NCBI and the BOLD database show the anchovy sample has similarities to the CO1 sequences of S. delicatulus with a similar of 99%. The results of the phylogenetic tree analysis showed that the anchovy samples from the southern waters of Lombok were in the same clade as S. delicatulus from Australia. The study concluded a fish sample of anchovy from the southerly waters of Lombok was a closed related species to S. delicatulus.

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