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Biodiversitas Journal of Biological Diversity
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Articles 6,269 Documents
Genetic Diversity and Sequence Variations at Growth Hormone Loci among Composite and Hereford Populations of Beef Cattle SUTARNO SUTARNO; A. J. LYMBERY
Biodiversitas Journal of Biological Diversity Vol. 1 No. 2 (2000)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d010201

Abstract

A total of 194 Hereford and 235 composite breed cattle from Wokalup Research Station were used in this study. The aims of the study were to: Investigate polymorphisms in the growth hormone gene in the composite and purebred Hereford herds from the Wokalup selection experiment, compare genetic diversity in the growth hormone gene of the breeds, sequencing and compare the sequences of growth hormone loci between composite and purebred Hereford herds with published sequence from Genebank. The genomic DNA was extracted using Wizard genomic DNA purification system from Promega. Two fragments of growth hormone gene were amplified using PCR and continued with RFLP. Each genotype in both loci was sequenced. PCR products of each genotypes were cloned into PCR II, transformed, colonies selection, plasmid DNA extraction continued with cycle sequencing. Polymorphisms were found in both breeds of cattle in both loci of GH-L1 and GH-L2 of the growth hormone gene by PCR-RFLP analysis. Sequencing analysis confirmed the RFLPs data, polymorphism detected using AluI at GH-L1 is due to substitution between leusin/ valine at position 127, while polymorphism at the MspI restriction site was caused by transition of C to T at +837 position.© 2000 Jurusan Biologi FMIPA UNS SurakartaKey words: PCR-RFLP, sequencing, growth hormone gene, polymorphism
The length-weight correlation and population dynamics of razor clams (Solen regularis) in Surabaya east coast, Indonesia NINIS TRISYANI; ENDANG YULI HERAWATI; MAHENO SRI WIDODO; DADUK SETYOHADI
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170258

Abstract

Trisyani N, Herawati EY, Widodo MS, Setyohadi D. 2016. The length-weight correlation and population dynamics of razor clams (Solen regularis) in Surabaya east coast, Indonesia. Biodiversitas 17: 808-813. Solen regularis is a pelecypod species living in intertidal areas at sandy substrate. In Surabaya east coast, Solen regularis is exploited by the locals for consumption, both as freshseafood or processed one. This research aims to analyze the length-weight correlation of the clams and the population dynamics, conducted from August 2014 to July 2015 in Surabaya east coast. The results show that the correlation is explained in the equation W = 0.038L2.798with the correlation coefficient of 0.9. Also, the allometric growth pattern is proven negative as the increase in body length is faster than that in weight. Growth is measured with von Bertalanffy growth model Lt = 8.0 ( 1-e (-0.7(t+0.003)) and the result from the parameter analysis using ELEFAN I method in FISAT II software show that L∞ = 8.0 cm and k = 0.7/year. The estimated weight at t0 in Pauly’s empirical formula is -0.003 cm. Mortality rates are shown as follows: natural mortality (M) is 2.05/year, fishing mortality (F) is 2.01/year, and total mortality is 4.05/year. Exploitation rate (E) is 0.50/year indicating that the exploitation of Solen regularis is inoptimal condition. The B/R and Y/R value is 1.4%/year. It can be suggested from the findings of the research that knowledge on population dynamics may be useful for the utilization and management of Solen regularis in order to preserve its environmental and ecological sustainability.Keywords: Growth, mortality, razor clams, Solen regularis, Surabaya east coast
Diversity of Soil Macrofauna at Different Stages of the Age of Sengon's Stand in Jatirejo, Kediri SUGIYARTO SUGIYARTO
Biodiversitas Journal of Biological Diversity Vol. 1 No. 2 (2000)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d010202

Abstract

Soil fauna have important roles on increasing and maintaining soil productivity through it's function on organic decomposition processes, and optimizing physics, chemist and biology of soil characters. The research was conducted to investigate structure of the community of soil macrofauna from different stages of the age of sengon's (Paraserianthes falcataria) stand in wet season of year 2000. Pit fall trap and hand-shorting methods were used to catch soil macrofauna. Sampling was done on 8 different age stages (year) of sengon plant each with triplicate repetition. Twenty-seven macrofauna species in the soil and 26 macrofauna species in soil surface were found in this study. Those species belong to the phylum of Mollusc, Annelid and Arthropod. Pontoscolex sp and Lobopelta ocellifera were species that having high important value. Similarities analysis resulting in an index of 65% indicating low level of diversity differences among soil macrofauna from different ages of the sengon stand. Simple correlation analysis indicates that macrofauna diversity in the soil was closely related with soil organic content, domination of ground vegetation and soil humidity; while macrofauna diversity of soil surface was closely related with the level of light penetration. 
Short Communication: Spiders of Sabah: Fifty new records including the description of a new Leucauge species DZULHELMI MUHAMMAD NASIR; WONG CHUN XING; ASRAF BAKRI; FASZLY RAHIM; NORMA RASHID YUSOFF
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170257

Abstract

Nasir DM, Wong CX, Bakri A, Rahim F, Yusoff NR. 2016. Short Communication: Spiders of Sabah: Fifty new records including the description of a new Leucauge species. Biodiversitas 17: 799-807. This paper is the second part of a continuing series, with the main objective of compiling and recording the spider species that can be found in Sabah, Malaysia. Based on the specimens collected during this field trip, a total of 50 new records of spider species from 11 families and 37 genera have been found. This includes one newly discovered spider species, the Leucauge sabahan sp. nov which is described based on a female specimen. It is hoped that this inventory can be used to assist in the knowledge about the spider species for this stage. In summary, an increment of 18% from the total number of spider species has contributed to a total of 272 recognized spider species recorded in Sabah, Malaysia.Keywords: Araneae, checklist, diversity, distribution, Borneo
Molecular identification of commercially important species of Nemipterus (Perciformes: Nemipteridae) in surrounding seas of Malaysia AYESHA IMTIAZ; DUONG THUY YEN; SITI AZIZAH MOHD NOR; DARLINA MD NAIM
Biodiversitas Journal of Biological Diversity Vol. 17 No. 2 (2016)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d170227

Abstract

Imtiaz A, Duong TY, Nor SAM, Naim DM. 2016. Molecular identification of commercially important species of Nemipterus (Perciformes: Nemipteridae) in surrounding seas of Malaysia. Biodiversitas 17: 571-577. The genus Nemipterus is a group of coral fishes which are morphologically diversified in coloration and distribution pattern. In this study, the mitochondrial Cytochrome coxidase-I (COI) gene was analyzed for genetic identification of 127 samples of genus Nemipterus from Malaysia waters. Sequence analysis of COI based data clearly distributed ten putative species into four distinct clusters clades. Intra-specific genetic distance values of 2.7%, 3.4% were observed in N. japonicus and N. nemurus which require more detailed analysis of the taxonomic status of some of the individuals attributing to slightly atypical values. Neighbor joining (NJ) tree shows a low genetic structuring in N. japonicus. Populations from Indian Ocean and South China Sea are isolated from each other but both share genetic structure with the population from the Straits of Malacca, suggesting the possibility of the latter acting as a barrier to the movement of this species between the two neighboring seas.
Application of Modern Experimental Technique to Solve Morphological Complexity in Plants Taxonomy SURANTO SURANTO
Biodiversitas Journal of Biological Diversity Vol. 1 No. 2 (2000)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d010207

Abstract

Modern taxonomy has two approaches, i.e. classical and experimental taxonomy. Classical taxonomy uses morphological characters, while experimental taxonomy uses broader methods including chemistry, physics and mathematics, in the form of laboratory data that are revealed together with the progress of optical technique (microscope), chemistry methods (chromatography, electrophoresis), etc. Modern taxonomy tends to use series of interrelated data. More data used would result in more validity and give better clarification of taxonomic status. A lot of modern taxonomic data such as palynology, cytotaxonomy (cytology), chemical constituent (chemotaxonomy), isozyme and DNA sequencing were used recently.© 2001 Jurusan Biologi FMIPA UNS SurakartaKeywords: modern taxonomy, palynology, cytotaxonomy, chemical constituent, isozyme.
Insectivore Plants Nepenthes sp. at Mount Merbabu HERY MULYANTO; DEWI CAHYUNINGDARI; AHMAD DWI SETYAWAN
Biodiversitas Journal of Biological Diversity Vol. 1 No. 2 (2000)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d010203

Abstract

The aims of the research were to know the existence of the Nepenthes at mount Merbabu, variations of its morphology, associated plants, and ecological conditions. Nepenthes are one of plants that were categorized as conserved plant by Indonesian government as indicated in PPRI No. 7/1999. Many researchers attracted to study this unique plant since it’s distinct feature and the way to get nutrient by trapping insects at its sac. Samples were taken randomly along the path for climbing from Selo, Boyolali to the top of the mountain between April to May 2000. The results show that the plants were found at the altitude of around 1500 to 2000 tsl. There were two forms of the sacs, long and short at the same individual plants. The plants grow coiling on Myristica trees and shrubs of Thunbergia fragrans Roxb., and also could grow at the stoned-soil.© 2000 Jurusan Biologi FMIPA UNS SurakartaKey words: Nepenthes, morphology, ecology
Plankton Biodiversity at Jabung Swamp, Lamongan and Tuban Districts OKID PARAMA ASTIRIN; AHMAD DWI SETYAWAN
Biodiversitas Journal of Biological Diversity Vol. 1 No. 2 (2000)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d010205

Abstract

Plankton, an aquatic biota, often used as an indicator of water quality. The objectives of the research were to know: (1) diversity of both phyto- and zooplankton at Jabung swamp, East Java; (2) water quality at the swamp, and (3) diversity of fish that act as primary consumer of the plankton. Field sampling procedures were done at the swamp, followed with identification and data analysis at laboratory. Sampling locations were at the inlet, pools in the swamp and at the outlet. Sample were taken triplicate at each location between September and November, 1999 using a plankton net, while fish data were collected by interview and direct observation at the field. Thirty-one species of plankton were found in this research consisting of 17 species of phytoplankton and 14 species of zooplankton. The results of the plankton analysis indicate that Jabung swamp categorizes as moderately polluted at the inlet, polluted free at the pools inside the swamp, and lightly polluted at the outlet. There were 15 fish species found at the swamp both of cultivated and non-cultivated fish.© 2000 Jurusan Biologi FMIPA UNS SurakartaKey words: biodiversity, plankton, Jabung swamp, water pollution
Studies on Morphological and Phylogenetic Relationship of Salak Pondoh Varieties (Salacca zalacca (Gaert.) Voss.) at Sleman Highlands. HERWIN SUSKENDRIYATI; ARTA WIJAYATI; NUR HIDAYAH; DEWI CAHYUNINGDARI
Biodiversitas Journal of Biological Diversity Vol. 1 No. 2 (2000)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d010204

Abstract

The objectives of the study were to know the morphological variation of salak-plants (Salacca zalacca (Gaert.) Voss. and their relationship. The study was conducted in May to April 2000, at Turi and Pakem of Sleman district, Yogyakarta. Samples were randomly taken, 5 plants of each variety were studied their morphological characters such as stem, leaf, flower and fruit. The data collected were then analyzed descriptive comparatively and their relationships were then determined. The result of the study indicate that there were at least 8 varieties of salak at Sleman district, green-, black-, yellow-, manggala-, red-yellow-, golden-, red-, and red-black pondoh. Morphological differences among varieties were markedly different. The closest relationship was found between variety of red-black- and black pondoh, while the farthest relationship among the varieties was manggala pondoh.© 2000 Jurusan Biologi FMIPA UNS SurakartaKey words: Salacca zalacca (Gaert.) Voss.), morphology, variety.
Variance Analysis of Genus Ipomoea based on Morphological Characters SURATMAN SURATMAN; DWI PRIYANTO; AHMAD DWI SETYAWAN
Biodiversitas Journal of Biological Diversity Vol. 1 No. 2 (2000)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d010206

Abstract

The objective of this research was to find out the variability of morphological characters of genus Ipomoea, including coefficient variance and phylogenetic relationships. Genus Ipomoea has been identified consisting of four species i.e.Ipomoea crassicaulis Rob, Ipomoea aquatica Forsk., Ipomoea reptans Poir and Ipomoea leari. Four species of the genus took from surround the lake inside the campus of Sebelas Maret University, Surakarta. Comparison of species variability was based on the variance coefficient of vegetative and generative morphological characters. The vegetative characters observed were roots, steams and leaves, while the generative characters observed were flowers, fruits, and seeds. Phylogenetic relationship was determined by clustering association coefficient. Coefficient variance analysis of vegetative and generative morphological characters resulted in several groups based on the degree of variability i.e. low, enough, high, very high or none. The phylogenetic relationship showed that Ipomoea aquatica Forsk. and Ipomoea reptans Poir. have higher degree of phylogenetic than Ipomoea leari and Ipomoea crassicaulis Rob.© 2000 Jurusan Biologi FMIPA UNS SurakartaKey words: Ipomoea, morphological characters, coefficient variance, phylogenetic relationships

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