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All Journal HAYATI Journal of Biosciences Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences Microbiology Indonesia The Journal of Experimental Life Sciences (JELS) Agrointek Jurnal Pangan dan Agroindustri Jurnal Keteknikan Pertanian Tropis dan Biosistem Jurnal Teknologi Pertanian agriTECH Indonesian Journal of Biotechnology UNEJ e-Proceeding Chimica et Natura Acta Agroindustrial Technology Journal Menara Perkebunan
AGUSTIN KRISNA WARDANI
Universitas Brawijaya
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemistry Computer Science & IT Control & Systems Engineering Earth & Planetary Sciences Education Electrical & Electronics Engineering Energy Environmental Science Immunology & microbiology Industrial & Manufacturing Engineering Materials Science & Nanotechnology Mechanical Engineering Medicine & Pharmacology Neuroscience

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Genomic and Haplotype Comparison of Butanol Producing Bacteria Based on 16S rDNA Wiratno, Ekwan Nofa; Suharjono, Suharjono; Wardani, Agustin Krisna
Journal of Tropical Life Science Vol 6, No 1 (2016)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.06.01.01

Abstract

High butanol demand for transportation was support to butanol development. Exploration of butanol producing bacteria using genome comparison and biogeography give role to butanol industrialization. Objective of this research are butanol production, genome comparison and haplotype analysis of butanol producing bacteria from Ranu Pani Lake sediment using 16S rDNA sequences. Highest butanol concentrations were resulted by Paenibacillus polymyxaRP 2.2 isolate (10.34 ± 0.00 g.l-1) then Bacillusmethylotrophicus RP 3.2 and Bacillusmethylotrophicus RP 7.2 isolate (10.11 ± 0.01 g.l-1 and 9.63 ± 0.01 g.l-1). Number of bases (T, C, A, G) of group 1 are similar, but different with group 2. Least G+C content is Clostridium saccharobutylicum Ox29 (51.35%) and highest is Bacillus methylotrophicus RP 7.2. Conserve region (1044 bp) of 16S rDNA higher then variative region (367 bp). The number of 319 bp is PIS whereas single tone as much as 48 bp. There are 17 conserves sequences. All of butanol producing bacterial sequences was clustered to 8 haplotype. Based on source of bacteria, there are three group of haplotype. Group A was isolated from Asia, group B was isolated from America and group C was isolated from Europe.
Genomic and Haplotype Comparison of Butanol Producing Bacteria Based on 16S rDNA Ekwan Nofa Wiratno; Suharjono Suharjono; Agustin Krisna Wardani
Journal of Tropical Life Science Vol. 6 No. 1 (2016)
Publisher : Journal of Tropical Life Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11594/jtls.06.01.01

Abstract

High butanol demand for transportation was support to butanol development. Exploration of butanol producing bacteria using genome comparison and biogeography give role to butanol industrialization. Objective of this research are butanol production, genome comparison and haplotype analysis of butanol producing bacteria from Ranu Pani Lake sediment using 16S rDNA sequences. Highest butanol concentrations were resulted by Paenibacillus polymyxaRP 2.2 isolate (10.34 ± 0.00 g.l-1) then Bacillusmethylotrophicus RP 3.2 and Bacillusmethylotrophicus RP 7.2 isolate (10.11 ± 0.01 g.l-1 and 9.63 ± 0.01 g.l-1). Number of bases (T, C, A, G) of group 1 are similar, but different with group 2. Least G+C content is Clostridium saccharobutylicum Ox29 (51.35%) and highest is Bacillus methylotrophicus RP 7.2. Conserve region (1044 bp) of 16S rDNA higher then variative region (367 bp). The number of 319 bp is PIS whereas single tone as much as 48 bp. There are 17 conserves sequences. All of butanol producing bacterial sequences was clustered to 8 haplotype. Based on source of bacteria, there are three group of haplotype. Group A was isolated from Asia, group B was isolated from America and group C was isolated from Europe.
Co-Authors - Fadlurrahman, - . Harijono Adi Syamsuri Agustin Krisna Wardhani Ajeng Astrini Brahmanti AJI SUTRISNO Aji Sutrisno Aji Sutrisno Ajrullah, Mauludy Jutta Ana Fauziah Anita Fitri Astuti Anita Fitri Astuti Anita Kusuma Finalissari Annisa Alirsyah Annisa Fadlilah Koos Cahyani Annisa Fadlilah Koos Cahyani Asma' Khoirun Nisa Atmiral Ernes Azmi Nahdhiyati Fathimah Azmy Nahdhiyati Fathimah, Azmy Nahdhiyati BAMBANG SUSILO Budiasih Wahyuntari Christina Ekawati Halim Dadang Suhendar Deden Eris Devi arianty Dian Widya Ningtyas Dwi Arinda Syahputri Dwi Arinda Syahputri Dwi Okta Indriani Dwi Okta Indriani Efendi Oulan Gustav Hakim Nata Buana Eko Sutrisno Hawusiwa Eko Sutrisno Hawusiwa Ekwan Nofa Wiratno ekwan nofa wiratno Ekwan Nofa Wiratno Elok Puji Kurnia Sari Endrika Widyastuti Erni Sofia Murtini Erryana Martati Fabryana Noor Anggita Putri Fabryana Noor Anggita Putri Fadeli Muhammad Habibie Faula Libna Nabela Fenty Nurtyastuti Eka Pertiwi Feronika Heppy Sriherfyna Fithri Choirun Nisa Grace Wijaya Gunawan, Ellen Fenix Halimatus Sa'diyah Hardanti, Sri Harsojo Harsojo Harsojo Harsojo Harsojo Harsojo Helmy Aditya Prabowo, Helmy Aditya Husna, Afifa Ika Rachmawati Wardani Ika Rachmawati Wardani Ika Yuli Andarti Ika Yuli Andarti Indah Kusumawardini Indria Purwantiningrum IS HELIANTI Is Helianti IS HELIANTI Jamhari Jamhari Joni Kusnadi Kafidul Ulum Kezia Abib Yerah Tjandra Kharisma Nafia Safitri Laili One Januarista Lauren Chrisya Wiguna Lia Oriana Nindita Lia Ratnawati Luqvia Noer Islami Syamsudin Maria Ulfah Marisa Zakiya Ulfa Marisa Zakiya Ulfa, Marisa Zakiya Mochamad Nurcholis Muhamad Taufiqul Naufal Muhamad Tommy Adrian Muhamad Tommy Adrian Muhammad Nur Sigit Harianto Muhammad Nur Sigit Harianto Niknik Nurhayati NIKNIK NURHAYATI Nur Ida Panca Nugrahini Pramesti, Nadya Shafa Pratidina Andayani Prawiro, Sumarno Reto Prestasia Budi Lestari Reno Nasrudin Salas Retno Dwi Yustina Rhytia Ayu C. Putri Riris Wahyuhapsari Riris Wahyuhapsari Risqia Adinda Putri RR. Ella Evrita Hestiandari RUTH CHRISNASARI RUTH CHRISNASARI Silvy Novita Antrisna Putri Silvy Novita Antrisna Putri, Silvy Novita Antrisna Sindy Hamadi Suharjono Suharjono Suminar Diyah Nugraheni SY, Muhammad Zakwan Saputra TATI NURHAYATI Tri Ardyati Tri Yudani MR UNTUNG MURDIYATMO Untung Murdiyatmo Venisa Yosephi Vicha Vitalaya Masduki Vindy Irmanita Vindy Irmanita, Vindy Widya Dwi Rukmi Putri Windra Prayoga Yuliandri, Rahmat