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All Journal HAYATI Journal of Biosciences Microbiology Indonesia Biota: Jurnal Ilmiah Ilmu-Ilmu Hayati Indonesian Journal of Biotechnology Proceeding Biology Education Conference
Langkah Sembiring
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Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Earth & Planetary Sciences Immunology & microbiology Materials Science & Nanotechnology Medicine & Pharmacology Public Health

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Uji Patogenisitas Isolat Bakteri Indigenous (Bacillus thuringiensis) terhadap Serangga Hama Kubis (Crocidolomia binotalis Zell) Christina L. Salaki; Jesmandt Situmorang; Langkah Sembiring; Niken Handayani
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 14, No 3 (2009): October 2009
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v14i3.2582

Abstract

Pathogenicity of 34 indigenous B. thuringiensis isolates against C. binotalis were determined. The pathogenicity test was conducted by using leaf dipped method with various spore concentrations. Third instar larvae of C. binotalis were used as insect test. Mortality data of test larvae were used to determine the pathogenicity of the isolates in terms of 72 hours LC50 by using probit analysis. The results of experiments showed YPPA 1. was the most pathogenic isolate, producing 72 hours LC50 = 9.5 x 103 spore.ml-1 with LT50 (1.5 x 107 spore.ml-1) of 24.6 hours while the ACH 2.3 was found to be the least pathogenic isolate with 72 hours LC50 = 2.3 x 106 spore.ml-1 and LT50 (1.5 x 107 spoore.ml-1) of 40.7 hours. The shortest LT50 (1.5 x 107 spore.ml-1 was found to be 18.2 hours produced by TUS.1 with 72 hours LC50 = 3.9 x 105 spore.ml-1 whereas the longest LT50 (1.5 x 107 spore.ml-1) was found tobe 83.2 hours produced by the SLK 4.1 with 72 hours LC50 = 3.1 x 104 spore.ml-1. Therefore, it can be concluded that both YPPA.1 and TUS.1 isolates are potential candidate to be developed for biological control agent.
Optimasi Produksi Poli-β-Hidroksibutirat (PHB) oleh Bacillus sp. PSA10 Nur Arfa Yanti; Sebastian Margino; Langkah Sembiring
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 15, No 3 (2010): October 2010
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v15i3.2587

Abstract

A new strain characterized as Bacillus sp. PSA10 was found to produce poly-β-hydroxybutyrate (PHB) at concentration of 52.28% (g PHB/g dry cell weight) in shaken flask culture, using sago starch as a carbon source. This research is aimed to determine the optimum culture condition of PHB production Bacillus sp. PSA10 at laboratory scale. Optimization of PHB production was conducted in this research, in terms of inoculum concentration, concentration of the major components in minimal medium, environmental condition and incubation time. The result showed that optimum conditions for the production of PHB by Bacillus sp. PSA10 were achieved at minimal medium (Ramsay medium) with 5% (v/v) inoculum concentration, 2% (w/v) sago starch, 1.0 g/l (NH4)2SO4, 6.7 g/l Na2HPO4.7H2O, and 0 g/l KCl. The optimum environmental conditions were achieved with initial pH 7, temperature 37oC, agitation speed at 150 rotary per minute (rpm) and the best of incubation time was 48 hour. Under this optimum condition, the maximum PHB production by Bacillus sp. PSA10 increased from 52.28% to 71.35% (g PHB/g dry cell weight) at 48 hour cultivation. Therefore, Bacillus sp. PSA10 is potential to apply for PHB production from sago starch at industrial scale.
Analisis Keanekaragaman Isolat Bacillus thuringiensis yang Patogenik terhadap Serangga Hama Kubis (Crocidolomia binotalis) dengan Pendekatan Sistematika Numerik Christina L. Salaki; Jesmandt Situmorang; Langkah Sembiring; Niken Handayani
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 15, No 3 (2010): October 2010
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v15i3.2605

Abstract

Diversity of B. thuringiensis (Bt.) isolates pathogenic to C. binotalis was determined by using Numerical Systematic Method. Ten isolates were taken to represent 34 pathogenic isolates along with two reference strains namely B. thuringiensis serovar kurstaki and B. thuringiensis serovar israelensis. The test isolates were examined for 89 phenotypic characters by using convensional method for colonial and cell morphology (37 characters) as well as physiological characteristics (3 characters) but biochemical characterization (49 characters) was conducted by using commercial API-50 CHB procedures. All phenotypic characters existed in one of two mutually exclusive states and were either scored plus (1) of minus (0). The binary data were prepared in Programmer’s File Editor (PFE) software. The data then were analysed by using the Multi Variate statistical Package (MVSP) Plus-Version 3.1 using the Simple Matching Coefficient (SSM). Clustering was achieved using the UPGMA algorithm. The results were presented as dendrograms. It was obtained that the test isolates were clearly assigned to two distinct multimembered clusters defined by 79.6 similarity level (S-level) in the SSM, UPGMA analysis. The two distinct clusters represented by each of two widely known different group of Bt. strains, namely serovar israelensis and serovar kurstaki. The first cluster contained reference strain of B. thuringiensis serovar israelensis, and two of the isolates (Slk2.3, and YPPA1) and the second cluster contained another reference strain of B. thuringiensis serovar kurstaki, and 8 of the isolates. Therefore, it strongly suggested that the application of numerical-fenetic analysis could provide a tool to unravel the strain diversity belong to B. thuringiensis.
Isolasi dan Identifikasi Streptomycetes dari Rizosfer Jagung (Zea mays L.) yang Berpotensi sebagai Penghasil Antibiotika Ambarwati Ambarwati; C. J. Soegihardjo; Langkah Sembiring
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 15, No 1 (2010): February 2010
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v15i1.2639

Abstract

In attempt to understand the diversity of Actinomycetes that is potential to be antibiotic producer, Streptomycetes were isolated and identified from soil sample taken from rhizosphere and non-rhizosphere of corn (Zea mays L.). The best antibiotic producers were identified by Scanning Electron Microscopy analysis and the identification of antibiotic produced conducted by using Thin Layer Chromatography analysis. The result of the study showed that 58 isolates were assigned to 17 colour groups. Ten isolates among the representatives of 17 colour groups were found potential to be antibiotic producer. Four isolates out of 10 isolates could inhibit both Staphylococcus aureus ATCC 25923 and Bacilus subtilis FNCC 0060, one isolate could inhibit only Staphylococcus aureus ATCC 25923 and five isolates could inhibit only Bacilus subtilis FNCC 0060. But no isolate could inhibit Escherichia coli ATCC 35218 and Salmonella typhimurium FNCC 0164. Among 10 isolates of antibiotic producer it was found that only one isolate (RNJ14) could strongly inhibit Staphylococcus aureus ATCC 25923 with inhibition zone diameter of 32.33 mm. On the bases of Thin Layer Chromatography analysis, the antibiotic produced by the isolate RNJ14 was identified to be lincomycin. Therefore it could be concluded that streptomycetes isolated from the rhizosphere and non-rhizosphere of corn (Zea mays L.) were potential to produce antibiotic.
Sistematik Filogenetik Pseudomonas Strain Indigenous Pendegradasi Liniar Alkilbenzen Sulfonat Suharjono Suharjono; Langkah Sembiring; Yusup Subagja; Wiwik E. Widayati
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 15, No 1 (2010): February 2010
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v15i1.2644

Abstract

Linear Alkylbenzene Sulphonate (LAS) was the dominant pollutant in the river ecosystem. Indigenous strains of Pseudomonas in river ecosystem had highly potency to LAS degradation. This research was carried out to study relationship of indigenous strains of LAS degrading to Pseudomonas strains. Indigenous strains of bacteria of LAS degrading were characterized based on ARDRA (Amplified Ribosomal 16S rDNA Restriction Analysis) and 16S rDNA sequence. Result of the research shows that Pseudomonas strain J and R which LAS degrading from detergent polluted river ecosystem based on 16S rDNA sequence, isolate J has 98.37% similarity and it has relationship to P. pseudoalcaligenes LMG 1225T whereas isolate R has 84.86% similarity and related to P. stutzeri phen8.
Analisis Filogenetik Burung Maleo (Macrocephalon maleo) Berdasarkan Sekuen Intron Satu Gen Rhodopsin (RDP1) Nukleus I Made Budiarsa; I Wayan Tunas Artama; Langkah Sembiring; Jesmandt Situmorang
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 15, No 2 (2010): June 2010
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v15i2.2693

Abstract

The phylogenetic relationships of the maleo (Macrocephalon maleo) were analyzed based on thefirst intron of rhodopsin nuclear gene sequence data obtained from 15 individuals, along withthose of 22 individuals taken from GenBank. The phylogenetic trees were reconstructed byNeighbor-Joining (NJ) method. Results indicated that 956 bp of RDP1 sequence, 414 (43.4%)sites were variable and 317 (33.2%) sites were phylogenetically-informative. The basecomposition for all species analyzed in this research were as follows: T 25.3%, C 26.3%, A18.5%, and G 29.9%. Analysis of RDP1 sequence produced trees that were remarkably wellresolved and had topologies at the marga level. The phylogenetic analysis showed that maleowas monophyly of Macrocephalon and closely related to Aepypodius, Talegalla, Leipoa andAlectura.
Isolasi dan Karakterisasi Jamur Pendegradasi Katekin dari Seresah Pinus Elisa Nurnawati; Langkah Sembiring
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 8, No 3 (2003): October 2003
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v8i3.2855

Abstract

Isolation of catechin-degrading fungus from pine litter samples was done using minimal medium that containing catechin as sole carbon and energy source.  A total of 53 isolates were chosen to represent different colonial types of catechin degrading-fungus. The isolates were screened for their ability to degrade catechin in three stages. The first stage of screening was based on their ability to grow on solid medium containing 2 mM, and as a result, 28 isolates were selected.  The second stage of screening on the same medium but containing 4 mM of catechin resulting in 14 selected isolates. The third stage screening was based on their mean growth rate constant (k), instantaneous growth rate constant (m) and generation time (g) on minimal medium containing 4 mM catechin. The result showed that four isolates (D9, K2, K11, and S11) were the best catechin degradator. Further growth kinetic study  (k, m ,and g) of selected  isolates   indicated that  D9, K2, and S11 grew well on the medium containing 40 mM, but  K11 was inhibited by concentration of higher than 10 mM. Catechin biodegradation process was determined by following the decrease of catechin concentration on liquid medium. It was found that isolate K2 had higher ability to degrade catechin than the isolate K11. Finally, the four selected isolates from the third stage were characterized in terms of macroscopic, microscopic and phenotypic characters and identified. The result of the study showed that the isolates D9, K2 and S11 were identified as member of Aspergillus niger group. The isolate D9 was very similar to isolate S11, while the isolate K2 was found to be the most similar with Aspergillus niger van Tiegh. IFO 6341. The isolate K11 was assigned to be member of the genus Trichoderma.
Ecological Approach to Unravel Streptomycete Diversity as an Unsurpassed Sources of Natural Bioactive Products LANGKAH SEMBIRING; MICHAEL GOODFELLOW
Microbiology Indonesia Vol. 2 No. 2 (2008): August 2008
Publisher : Indonesian Society for microbiology

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (77.938 KB) | DOI: 10.5454/mi.2.2.1

Abstract

Search and discovery for natural bioactive products have been so important to control the emergence of antibiotic resistant microbial pathogens. Therefore, novel microorganisms that produce such metabolites is extremely needed. The capacity of members of the genus Streptomyces to produce commercially significant bioactive metabolites, notably antibiotics remains unsurpassed. However, it is acknowledged that discovering commercially useful secondary metabolites from streptomycetes is becoming more difficult due to lack of knowledge on the ecology and complexity of streptomycete systematics. In fact, those are fundamental aspects for developing strategy and method for isolation. In order to devise an appropriate program for successful selective isolation of sreptomycetes, it is fundamentally important to understand their occurance and activity in nature. A multistep extraction procedure designed for representative sampling, called dispersion, and differential centrifugation technique in combination with the incorporation of antibiotics into isolation media has become one of the most important selective method for the isolation of streptomycetes from natural habitats. The availability of new procedures to selectively isolate representative of streptomycetes from natural habitats opens up the possibility to determine the extent of streptomycete diversity from various habitats. Hence, the capacity of well characterized streptomycete isolates to produce commercial novel active metabolites could be further assessed appropriately.
OPTIMASI KONDISI FERMENTASI UNTUK PRODUKSI SELULOSA BAKTERI OLEH STRAIN SLK-1 DALAM MEDIA DASAR AIR KELAPA (Optimization Of Fermentation Conditions For The Production Of Bacterial Cellulose By Slk-1 Strain In Coconut Water Based Medium) Sarkono Sarkono; Sukarti Moeljopawiro; Bambang Setiaji; Langkah Sembiring
Proceeding Biology Education Conference: Biology, Science, Enviromental, and Learning Vol 9, No 1 (2012): Prosiding Seminar Nasional IX Biologi
Publisher : Universitas Sebelas Maret

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Abstract

ABSTRAK   Tujuan penelitian ini adalah mengoptimasi kondisi fermentasi terbaik strain Bakteri Asam Asetat penghasil selulosa yaitu isolat SLK-1.  Strain ini diisolasi dari buah salak pada penelitian sebelumnya.  Hasil optimasi menunjukkan bahwa kondisi fermentasi optimum untuk pertumbuhan dan produksi selulosa pada isolat SLK-1  dicapai dengan sumber karbon gula pasir, sumber nitrogen ammonium sulfat, pH 7, suhu inkubasi 25°C dan metode fermentasi statis. Karakter struktur permukaan selulosa hasil fermentasi isolat SLK-1 dipengaruhi oleh metode fermentasi yang digunakan.  Metode fermentasi goyangan berpengaruh menurunkan produksi selulosa pada  isolat SLK-1 dan merubah struktur permukaan yaitu susunan mikrofibril lebih renggang dan membentuk gelembung.   Kata Kunci: bakteri asam asetat, optimasi, fermentasi, selulosa bakteri, penggoyangan
UJI AKTIVITAS ANTIBAKTERI ISOLAT ACTINOMYCETES DARI RIZOSFER PADI (Oryza sativa) TERHADAP Salmonella typhosa DAN Staphylococcus aureus Ambarwati Ambarwati; Tanti Azizah S; Langkah Sembiring; Subagus Wahyuono
Proceeding Biology Education Conference: Biology, Science, Enviromental, and Learning Vol 10, No 2 (2013): Seminar Nasional X Pendidikan Biologi
Publisher : Universitas Sebelas Maret

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Abstract

Actinomycetes merupakan anggota bakteri yang dipromosikan sebagai penghasil zat  antimikrobial  terbesar.  Tujuan penelitian ini adalah untuk mengisolasi dan mengidentifikasi Actinomycetes dari rizosfer padi (Oryza sativa) yang berpotensi sebagai penghasil antibakteri dan dapat menghambat pertumbuhan Salmonella typhosa dan Staphylococcus aureus. Penelitian ini menghasilkan 17 isolat Actinomycetes, 8 isolat diantaranya mampu menghasilkan zat antibakteri. Diantara 8 isolat tersebut, satu isolat mampu menghambat pertumbuhan kedua bakteri uji, yaitu NRPR 13 yang menghambat Salmonella typhosa (dengan diameter daerah hambatan 14 mm) dan Staphylococcus aureus (12 mm). Tiga isolat mampu menghambat pertumbuhan bakteri Salmonella  typhosa, yaitu NRPR  14  (11 mm), NRPR  62 dan NRPR 67 (masing-masing 10 mm). Dan empat isolat mampu menghambat pertumbuhan Staphylococcus aureus, yaitu RPR 15 (14 mm),  NRPR 11 (17 mm), NRPR 33 (11 mm) dan NRPR 46 (16 mm).  Berdasarkan hasil penelitian ini dapat disimpulkan bahwa Actinomycetes yang diisolasi dari rizosfer padi berpotensi menghasilkan zat antibakteri. Kata kunci : Actinomycetes,  Zat Antibakteri, S. typhosa,  S. aureus.
Co-Authors Bambang Setiaji C. J. Soegihardjo Charlie Ester de Fretes Christina Salaki Dwi Suhartanti Elisa Nurnawati I Wayan Tunas Artama Jamhari Jamhari Jesmandt Situmorang Jusup Subagja Laksono Trisnantoro Lela Susilawati Lisa Lisdiana Masashi Kawaichi Michael Goodfellow Niken Handayani Niken Satut Nur Handayani Nur Arfa Yanti Nurhayani H. Muhiddin Sarkono Sarkono SATRIYAS ILYAS Sebastian Margino Sri Darmawati Subagus Wahyuono Sukarti Moeljopawiro Tanti Azizah S Tri Ardyati Wayan T. Artama Widya Asmara Wiwik E. Widayati Yekti Asih Purwestri Yurnaliza, Yurnaliza Yusup Subagja