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HAYATI Journal of Biosciences

hayati
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Published by Institut Pertanian Bogor

ISSN : 19783019 EISSN : 20864094 DOI : -

Core Subject : Science, Agriculture,

Agriculture, Biological Sciences & Forestry Earth & Planetary Sciences

HAYATI Journal of Biosciences (HAYATI J Biosci) publishes articles and short communication in tropical bioscience fields such as development, biotechnology, biodiversity and environmental issues. HAYATI J Biosci covers wide range of all life forms topics including virus, microbes, fungi, plants, animal and human. HAYATI J Biosci has been also indexed/registered in Crossref, DOAJ, CABI, EBSCO, Agricola and ProQuest.

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Articles 1,077 Documents

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Changes of Gibberellin and Total Sugar Content in Flower Developmental Stages of Mangosteen I NYOMAN RAI; ROEDHY POERWANTO; LATIFAH KOSIM DARUSMAN; BAMBANG SAPTA PURWOKO
HAYATI Journal of Biosciences Vol. 13 No. 3 (2006): September 2006
Publisher : Bogor Agricultural University, Indonesia

The objectives of this experiment were to study the changes of gibberellic acid and total sugar content in flower developmental stages of mangosteen. The result showed that flower development of mangosteen consisted of four stages: induction, differentiation, maturition of flower organs, and anthesis. Floral induction was microscopically characterized by the swelling of the basal structure of the new shoot. It was found that induction stage of mangosteen flowering was characterized by sharp decrease of gibberellic acid (GA3, GA5, GA7) and increase of total sugar content of leaf. On the other hand, it was found that leaf of the non-flowering shoot apices had high gibbrellic acid and low total sugar. Key words: mangosteen, flowering, induction, gibberellic acid

Inheritance of Blast Resistance (Pyricularia grisea Sacc.) on Interspecific Crossing between IR64 and Oryza rufipogon Griff DWINITA WIKAN UTAMI; HAJRIAL ASWIDINNOOR; SUGIONO MOELJOPAWIRO; IDA HANARIDA; REFLINUR REFLINUR
HAYATI Journal of Biosciences Vol. 13 No. 3 (2006): September 2006
Publisher : Bogor Agricultural University, Indonesia

Blast disease affected by Pyricularia grisea causes high percentage of yield losses in rice production. The improvement of durable Blast resistance is difficult due to the complexity of the inheritance of this trait. This study was conducted to evaluate the genetic control and inheritance of Blast resistance trait in interspesific population between IR 64 (accepted Indonesian rice type, medium resistant to Indonesian Blast pathogen) and Oryza rufipogon (AA genome; acc. No.IRGC#105491; donor for Blast resistance). Six populations, i.e. P1, P2, F1, F2, BCP1, and BCP2, were inoculated with three Indonesian races of Blast pathogen. The disease intensity was determined on the basis of disease leaf area (DLA). The three types of gene interactions (additive, dominance, and epistatis) were significantly involved in this trait. Among the digenic epistasis interactions, all of the additive x additive [i], additive x dominance (j) and dominance x dominance (l) contributed to the trait. Broad-sense heritability ranged from 50.30 up to 91.20%, while the narrow heritability ranged from 16.98 up to 73.20%. The presence of additive gene effect indicated that selection of this trait is promising. Key words: inheritance, Blast resistance, wild rice, Oryza rufipogon

Characterization of Lipopolysaccharides of Bradyrhizobium japonicum KDR 15 Heavy Metal Tolerant ALFI DATIN ZAUQIAH; TEDJA -IMAS; DWI NINGSIH SUSILOWATI
HAYATI Journal of Biosciences Vol. 13 No. 3 (2006): September 2006
Publisher : Bogor Agricultural University, Indonesia

The lipopolysaccharide (LPS) of Bradyrhizobium japonicum KDR 15 heavy metal tolerant strain was isolated by miniphenol-water extraction and yielded LPS in phenol and water phase. The LPS KDR 15 was further characterized by sodium dodecyl sulfate-polyacrilamide gel electrophoresis (SDS PAGE) and showed many bands distributed from an area of high until low molecular weight (LPS IA, IB, and II). Composition analysis of the LPS had been done after acetic acid 1% hydrolysis. The polysaccharide portion consist of glucose, sucrose, galactose, mannose, xylose, arabinose, rhamnose, ribose, glucosamine, and 3-deoksi-D-manno-oktulosonat (KDO). Lipid A portion consisted of C16:0 and C18:1. The LPS also contained 0.02% of protein and 1.7% of phosphate. The presence of functional groups that shows negative charge densities such as phosphate and carboxyl within LPS KDR 15 assumed to be a potentially binding sites for accumulating heavy metals. Key words: Bradyrhizobium japonicum, heavy metal tolerant, lipopolysaccharides

Feeding Rate of Soil Animals in Different Ecosystems in Pati, Indonesia RAHAYU WIDYASTUTI
HAYATI Journal of Biosciences Vol. 13 No. 3 (2006): September 2006
Publisher : Bogor Agricultural University, Indonesia

The feeding activity of soil animals was measured by using bait lamina test in three main ecosystems, i.e. the teak forest, home garden and rainfed paddy field. Two additional ecosystems in rainfed paddy field, i.e. the old (permanently established bund around paddy fields) and new bunds were examined as well. Three blocks of bait-lamina sticks (each block consisting of 16 individual sticks) were exposed at each location. The bait lamina were retrieved from the soil after two days and visually assessed. Each hole is designated as Ã¢â&sbquo;¬Å“fedÃ¢â&sbquo;¬Â (perforated) or Ã¢â&sbquo;¬Å“non-fedÃ¢â&sbquo;¬Â hole. The feeding rate is measured as the absolute number of Ã¢â&sbquo;¬Å“fedÃ¢â&sbquo;¬Â holes. Soil animals in the old bunds showed the highest feeding activity (55.20%), followed by home garden (39.10%), rainfed paddy field (16.50%), teak forest (15.60%), and new bund (7.80%). The frequency of animals attack to the bait strips also indicated the similar pattern as their feeding activity, i.e. high in the old bunds (0.90), followed by home garden (0.70), teak forest (0.40), new bunds (0.40) and rainfed paddy field (0.30), respectively. Key words: soil animals, feeding activity, bait-lamina test

Ecotoxicological Assessment of Aquatic Genotoxicity Using the Comet Assay KHUSNUL YAQIN
HAYATI Journal of Biosciences Vol. 13 No. 3 (2006): September 2006
Publisher : Bogor Agricultural University, Indonesia

Comet assay is a novel biological analysis, which is a sensitive, flexible, simple, rapid, and inexpensive method to assess aquatic genotoxicant. Since Singh and co-workers developed the method in 1988, its use has increased exponentially in various fields. This review discourses on the application of this assay in aquatic ecosystems. Various types of cells from various aquatic organisms have been tested by various genotoxicant both direct- and indirect-acting using the comet assay. The applications of this assay suggest that it is a useful assay to assess aquatic genotoxicants. However, there are some factors, which should be taken into account when using this assay as aquatic ecotoxicological assessment device such as inter-animal and cell variability. Key words: comet assay, aquatic genotoxicant, aquatic organism, ecotoxicological assesment

Maturation Rate of Ovine Oocytes from Different Reproductive Status and Maturation Medium ARIEF BOEDIONO; YULNAWATI YULNAWATI; MOHAMAD AGUS SETIADI
HAYATI Journal of Biosciences Vol. 13 No. 4 (2006): December 2006
Publisher : Bogor Agricultural University, Indonesia

The aim of the present study was to determine the number of follicles, oocyte quality and maturation rate of oocytes from pairs of ovary with different reproductive status in two maturation medium, TCM-199 as control and CR1aa as treatment. The pairs of ovary were classified into four groups: (i) ovaries with corpus luteum (CL) and dominant follicle (DF), (ii) ovaries with CL, without DF, (iii) ovaries with DF, without CL, (iv) ovaries without both CL and DF. Results of the experiment revealed that the greatest number of follicles was observed from ovary with CL without DF (15.88 + 10.68), although not significantly different (P > 0.05) with other status of ovaries. The lowest number (P < 0.05) of A grade oocytes was found from ovary with DF without CL (1.20 + 1.10). The percentage of Metaphase II was highest in TCM-199 (75.51%) with oocytes from ovaries with CL and DF, and the lowest with oocytes from ovaries with DF without CL in TCM-199 and CR1aa (42.86 and 30.95%). The study suggested that the number of oocytes with A grade were influenced by the reproductive status of ovaries. The maturation rate of A grade oocytes was influenced by the quality of oocytes and the composition of maturation medium. Key words: reproductive status, corpus luteum, dominant follicles, TCM-199, CR1aa

Spatial Analysis of Agricultural Landscape and Hymenoptera Biodiversity at Cianjur Watershed YAHER WANDI; SYAFRIDA MANUWOTO; DAMAYANTI BUCHORI; PURNAMA HIDAYAT; LILIK BUDIPRASETYO
HAYATI Journal of Biosciences Vol. 13 No. 4 (2006): December 2006
Publisher : Bogor Agricultural University, Indonesia

Hymenoptera is one of the four largest insect order (the other three are Coleoptera, Diptera, and Lepidoptera). There are curerently over 115 000 described Hymenoptera species. It is clear that Hymenoptera is one of the major components of insect biodiversity. However, Hymenoptera biodiversity is affected by ecology, environment, and ecosystem management. In an agricultural areas, the spatial structure, habitat diversity, and habitat composition may vary from cleared landscapes to structurally rich landscape. Thus, it is very likely that such large-scale spatial patterns (landscape effects) may influence local biodiversity and ecological functions. Therefore, the objective of this research were to study diversity and configuration elements of agricultural landscapes at Cianjur Watershed with geographical information sytems (GIS) and its influence on Hymenoptera biodiversity. The structural differences between agricultural landscapes of Nyalindung, Gasol, and Selajambe were characterized by patch analyst with ArcView 3.2 of digital land use data. Results indicated that class of land uses of Cianjur Watershed landscape were housing, mixed gardens, talun and rice, vegetable, and corn fields. Landscape structure influenced the biodiversity of Hymenoptera. Species richness and the species diversity were higher in Nyalindung landscape compare to Gasol and Selajambe landscape. Key words: diversity, Hymenoptera, landscape, watershed, GIS

Evolution of a Wingless Gene and its Utility for Inferring the Relationships within Glyphodes Moths HARI SUTRISNO
HAYATI Journal of Biosciences Vol. 13 No. 4 (2006): December 2006
Publisher : Bogor Agricultural University, Indonesia

The evolution of a nuclear Wingless gene was investigated and its utility for inferring the phylogenetic relationship within Glyphodes moths was assessed by comparing with other three genes namely, COI, COII, and EF-1?. The results show that the bias of base compositions in Wingless (C: 0.19) is the lowest among those in COI, COII, and EF-1?. The averages of nucleotide sequence divergences for comparison between groups based on the Wingless were the highest. While substitutions in Wingless and EF-1? genes were not saturated at the divergence of the species groups, COI and COII genes attained saturation at those levels. The phylogenetic analysis based on Wingless solely show that this gene was very useful to resolve the relationships between groups but gave a poor resolution at the specific level, i.e. the relationships within group 1 was not resolved. Combination of all data supports the phylogenetic hypothesis based on morphological data. Glyphodes falls into three species groups: group 2 branched off first then followed by groups 1 and 3. Key words: COI, COII, EF-1?, genes, Glyphodes, mitochondria, moth, phylogeny, relationships, Wingless

Characterization of Xylanase Streptomyces spp. SKK1-8 ANJA MERYANDINI; TRIO HENDARWIN; DEDEN SAPRUDIN; YULIN LESTARI
HAYATI Journal of Biosciences Vol. 13 No. 4 (2006): December 2006
Publisher : Bogor Agricultural University, Indonesia

Streptomyces spp. SKK1-8 producing xylanase was isolated from soil sample from Sukabumi West Java. The xylanase have an optimum condition at pH 6 and 50 0C. Addition of 5 mM Cu2+ decreased the xylanase activity up to about 77%, whereas not by other cations. The xylanase was stable at 3 0C for 48 hours, and the enzyme half lifetime was 1 hour 45 minute at 50 0C. This xylanase showed the highest activity on oatspelt xylan, and their molecular masses were estimated approximately 16.80, 15.21, and 13.86 kDa. HPLC analysis showed that xylosa and arabinosa were the main hydrolytic product of birchwood xylan. Key words: xilanase, Streptomyces spp., characterization, zymogram and SDS-PAGE, stability

Fecundity, Longevity, and Host Finding of Three Parasitoid Species of Liriomyza sativae SITI HERLINDA; AGUSMAN JAYA; YULIA PUJIASTUTI; AUNU RAUF
HAYATI Journal of Biosciences Vol. 13 No. 4 (2006): December 2006
Publisher : Bogor Agricultural University, Indonesia

Liriomyza sativae is a polyphagous agromyzid leafminer and it has invaded large part of world, i.e Hemiptarsenus varicornis, Gronotoma micromorpha, and Opius dissitus. This research were conducted to investigate progeny, immature development period, longevity of female parasitoids of L. sativae, and to study female parasitoid behaviour in host finding. Host finding behaviour was observed by examining their visit frequency to the leaves that mined by leafminer larvae and healthy leaves. Results showed that H. varicornis produced more progenies (10.70 + 2.58 progenies/female), but not significantly different (P < 0.05) from progenies produced by G. micromorpha (9.90 + 3.81 progenies/female) and O. dissitus (9.60 + 3.31 progenies/female). The immature development period of G. micromorpha (25.65 + 0.38 days) was found to be longer than H. varicornis (16.14 Ã‚Â± 1.20 days) and O. dissitus (14.03 + 0.22 days). Significant different (P = 0.1014) of adult longevity was not found among H. varicornis (9.22 + 2.48 days), G. micromorpha (7.25 + 1.34 days), and O. dissitus (8.74 + 2.18 days). Our analyses also indicated that G. micromorpha and O. dissitus found their hosts based on the larvae mining, however, H. varicornis performed it randomly. Based on the number of progeny and longevity of adult female, all parasitoids tested may have a potential as biological control agents of leafminer, L. sativae. Key words: fecundity, longevity, behavior, Hemiptarsenus, Gronotoma, Opius, Liriomyza sativae

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