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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 40 Documents
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Search results for , issue "vol. 20 no. 6 (2019)" : 40 Documents clear
Evaluation of land use impact on river water quality using macroinvertebrates as bioindicator in Lahumoko Watershed, Buton Island, Indonesia KAHIRUN KAHIRUN; LAODE SABARUDDIN; MUKHTAR MUKHTAR; LAODE MUHAMMAD HARJONI KILOWASID
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200623

Abstract

Abstract. Kahirun, Sabaruddin L, Mukhtar, Kilowasid LOMH. 2019. Evaluation of land use impact on river water quality using macroinvertebrates as bioindicator in Lahumoko Watershed, Buton Island, Indonesia. Biodiversitas 20: 1658-1670. The Lahumoko Watershed, a small watershed, that empties into the sea is sensitive to water quality changes due to land use changes by humans. Uncontrolled land use changes can threaten the sustainability of the river ecological functions of the watershed. It is important to examine the comparison of river water quality in locations that represent land uses. So, the objectives of this study were to reveal the impact of land use on biological water quality in rivers and to analyze the relationship between macroinvertebrates communities with parameters of biodiversity and physicochemical at the observation locations that represented land use. Biological samplings were done using a hand net with a hole size of 0.5 mm mesh, at five stations, each with three replications, with a length of 30 m of each replication, 60 minutes per station. The results of the study showed that individual abundance, family biotic index and diversity index parameters indicated that the water quality was quite good in the upstream watershed (LM1, LM2, and LM3 stations) and somewhat worse in the middle (LM4 station) and downstream of the watershed (LM5 station). The Spearman's correlation, Dendrogram, and Canonical Correspondent Analysis (CCA) showed that there were similarities among LM1, LM2 and LM3 stations, and also between LM4 and LM5 stations. Physicochemical parameters, especially the velocity and flow rate of the river flow had significant correlation with individual richness and density.    
Biodiversity management plan in the non-conservation area, Cisokan hydropower plan area, Cianjur, West Java, Indonesia TEGUH HUSODO; SYA SYA SHANIDA; ERRI NOVIAR MEGANTARA
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200606

Abstract

Abstract. Husodo T, Shanida SS, Megantara EN. 2019. Biodiversity management plan in the non-conservation area, Cisokan hydropower plan area, Cianjur, West Java, Indonesia. Biodiversitas 20: 1524-1536. Based on data from various environmental studies at the Upper Cisokan Pumped Storage (UCPS) Hydropower plan area, further studies need to be carried out that can provide clearer guidance on how to protect and restore the environment (including habitat) around the UCPS, protect, and manage the endangered biodiversity through adaptive approaches and ecosystem management. One of these studies was the UCPS Biodiversity Management Plan (BMP). The aim of this study was to identify the strategy for biodiversity management at the project site. Methods of this study were based on several years of qualitative and descriptive-analytical studies, which updated information from earlier studies. Information on the area’s biodiversity was obtained directly through field surveys and indirectly through semi-structured interviews and focus group discussions (FGD) with local community members and other stakeholders in the area. This article presents the strategy for biodiversity management at project site, including minimizing habitat gap and habitat loss; expanding and enriching habitats; making corridors; protecting the natural forests (protection of remnant forest); controlling access; managing fire, the impact of traffic on native fauna, land clearing and human-wildlife conflict; minimizing impacts to biodiversity,  particularly threatened species; integrating management with adjoining land managers (PLN, perhutani, the community); strengthening capacities for integrating and institutionalizing biodiversity conservation and management; conducting campaign for biodiversity awareness, communication, and education; and developing value-added products and alternative sustainable livelihood for bio-resource-dependent communities. Keywords: Biodiversity Management Plan, Hydropower Company
CO2 fluxes from drained tropical peatland used for oil palm plantation in relation to peat characteristics and crop age after planting EVI GUSMAYANTI; GUSTI Z ANSHARI; MUHAMMAD PRAMULYA; AGUS RULIYANSYAH
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200622

Abstract

Large expansion of oil palm plantation on peatland has changed its important role for carbon sink into a carbon source.  Conversion of peat swamp forest with high carbon density into a monoculture of oil palm has released the significant amount of carbon into atmosphere either carbon previously stored in forest biomass or carbon stored in peat organic matter.  Drainage canal to artificially lower groundwater level as a prerequisite of oil palm cultivation provides the favorable condition for soil microbes activities in decomposing peat organic matter resulted in CO2 flux increase.  The fluctuation of groundwater level and variation of environmental factors near the peat surface may regulate the rate of CO2 released from the soil.  We aimed to measure CO2 fluxes from two sites of oil palm plantation with different peat characteristics and analyzed the correlation with groundwater level, soil temperature, air temperature,  gravimetric water content, peat pH, oxidative reductive potential, and crop age.  The measurement has been conducted from September 2016 to April 2017 in West Kalimantan, Indonesia by using portable infrared gas analyzer EGM 4.  In addition to soil sampling at the same time as the gas measurement, we collected soil samples for some peat characteristics analysis consist of bulk density, particle density, porosity, soil organic matter, ash content, carbon, and nitrogen content prior to CO2 flux measurement.  Our result shows that the difference of peat chemical characteristics between two sites has resulted in different CO2 flux.  Oil palm ages seemed to affect CO2 flux by regulating microclimatic condition around crop canopy.  Another finding is the insignificant relationship between CO2 fluxes and groundwater level unless the groundwater level reached more than 50 cm from the peat surface.  It implies that maintaining groundwater level-up to 50 cm resulting in similar CO2 flux.
Short Communication: Update phylogenetic information of the local varieties of cloves (Syzygium aromaticum) from North Maluku, Indonesia based on ITS sequences data SUNDARI SUNDARI; NURHASANAH NURHASANAH; ABDU MAS’UD; MOHAMAD AMIN; ESTRI LARAS ARUMINGTYAS; RODIYATI AZRIANINGSIH
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200604

Abstract

Abstract. Sundari, Nurhasanah, Mas'ud A, Amin M, Arumingtyas EL, Azrianingsih R. 2019. Update phylogenetic information of the local varieties of cloves (Syzygium aromaticum) from North Maluku, Indonesia based on ITS sequences data. Biodiversitas 20: 1510-1515. Clove (Syzygium aromaticum L. Merr & Perry) is a native spice plant species in Indonesia, especially Maluku and North Maluku. The phylogenetic relationship among local varieties of cloves in North Maluku, Indonesia is currently unclear; therefore molecular verification research is required for further conservation and breeding programs. This study aims to identify the taxonomic position and phylogenetic relationship among two valuable local varieties of cloves rom North Maluku, i.e., ’Afo’ and ’Sibela’, based on ITS sequences data. Afo clove is considered as the oldest clove native to Ternate island, and Sibela clove is the oldest clove native to Bacan Island. The phylogenetic analysis using both Maximum Parsimony and Neighbour Joining algorithms confirmed the monophyletic group of cloves (S. aromaticum) and separated to outgroup of Eugenia species. Both phylogenetic trees produced three clades with the same pattern and supported by strong bootstrap values of 99-100%.
Short communication: Enhanced enrichment is inevitable to carry on the legacy of African civet (Civettictis civetta) captive farming TAKELE TAYE DESTA
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200613

Abstract

Abstract. Desta TT. 2019. Enhanced enrichment is inevitable to carry on the legacy of African civet (Civettictis civetta) captive farming. Biodiversitas 20: 1575-1579. African civet secrets an aromatic compound called civet musk. Ethiopia has a long-lasting production and trading history of civet musk. Ethiopia holds about 90% of the international market share. Irrespective of economic importance and histocultural significance; inadequate enrichment and suboptimal management have been increasingly threatened the welfare of captive civets. To carry on with the legacy of captive civet farming, current management practice should have to be improved and additional civet and civet musk derived use values should have to be sought after.
Short Communication: Sexual dimorphism of Hill Blue Flycatcher (Cyornis banyumas) in Hill Evergreen Forest, Mae Sa-Kog Ma Biosphere Reserve, Chiang Mai Province, Thailand PAANWARIS PAANSRI; SUPALAK SIRI; YUWADEE PONPITHUK; WARONG SUKSAVATE; MONGKOL SAFOOWONG; WIMONMART NUIPAKDEE; PRATEEP DUENGKAE
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200608

Abstract

Abstract. Paansri P, Siri S, Ponpithuk Y, Suksavate W, Safoowong M, Nuipakdee W, Duengkae P. 2019. Sexual dimorphism of Hill Blue Flycatcher (Cyornis banyumas) in Hill Evergreen Forest, Mae Sa-Kog Ma Biosphere Reserve, Chiang Mai Province, Thailand. Biodiversitas 20: 1544-1548. A sample consisting of 60 males and 39 females Cyornis banyumas captured in the Mae Sa-Kog Ma Biosphere Reserve was examined using 42 morphometric characters to assess sexual dimorphism. The results of the univariate analysis showed that there were ten morphometric traits (Ltail, TLF, C-middle, HB, C-outer, T-inner, C-digit, T-middle, DUTET and LG) that could be used for discrimination of sexual differences. The morphological data based on significant differences revealed that males were larger than females. The results of discriminant analysis based on the significant differences of nine raw morphometric data can be used to construct a sexual discrimination equation (D) where D = -22.051 + 0.368 (Ltail). The sexual discrimination equation can be directly used to identify both sexes with 79.6% of cross-validated grouped cases correctly classified, since positive D scores indicated males and negative D scores indicated females, with 81.4% of the males and 74.4% of the females being correctly assigned with a cutoff value between sexes = 0.
Antagonism of Pseudomonas fluorescens from plant roots to Rigidoporus lignosus pathogen of rubber white roots in vitro NURHAYATI DAMIRI; MULAWARMAN MULAWARMAN; RAHIM S EFFENDI
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200609

Abstract

Abstract. Damiri N, Mulawarman, Effendi RS. 2019. Antagonism of Pseudomonas fluorescens from plant roots to Rigidoporus lignosus pathogen of rubber white roots in vitro. Biodiversitas 20: 1549-1554. Indonesia's rubber productivity is still relatively low. This low productivity of rubber can be caused by many factors such as the attack of Rigidoporus lignosus. This study aims to explore antagonistic bacteria from the plant roots and test their antagonism ability to R. lignosus at the laboratory level. This research was conducted at the Laboratory at the Faculty of Agriculture, Sriwijaya University, Indralaya Ogan Ilir District, South Sumatra, Indonesia. Corporate and bacterial isolations are carried out by serial dilution method. In-vitro testing of antagonistic bacteria was carried out using the dual-culture technique method on sterile PDA media by direct opposition between R. lignosus culture and antagonistic bacteria explored. Results of the study showed that a number of bacterial isolates existed there, namely 11 bacterial isolates belonging to Pseudomonas fluorescens, four from turmeric roots, three from the roots of rubber seedlings, two from galangal roots and two from the roots of yielding rubber plants. P. fluorescens from roots of turmeric, rubber seedlings, rubber, and galangal was able and had the potential to be developed as biopesticide to control R. lignosus. The best isolate in suppressing the growth and development of R. ligonosus is P. fluorescens isolates from the roots of turmeric and those of rubber seedlings (isolates of C, B, and G).
Genetic diversity of mindi (Melia azedarach) from community forest in Deli Serdang, North Sumatra, Indonesia revealed by microsatellite marker RIDAHATI RAMBEY; ARIDA SUSILOWATI; NELLY ANNA
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200629

Abstract

Abstract. Rambey R, Susilowati A, Anna N. 2019. Genetic diversity of mindi (Melia azedarach) from community forest in Deli Serdang, North Sumatra, Indonesia revealed by microsatellite marker. Biodiversitas 20: 1708-1712. Melia azedarach or locally known as mindi is fast growing and one of important tree species for community forests especially in West Java and North Sumatra, Indonesia. High demand for its wood must be accompanied by increased productivity through planting of high-quality seed. There is still lack of information about genetic diversity of mindi from different seed source in North Sumatra. Therefore, our research was conducted to determine genetic diversity of mindi from different seed source in North Sumatra through microsatellites marker. Leaf samples originated from three populations Percut Sei Tuan, Pancur Batu and Biru-Biru were used in this study. The SSR markers were from Azadirachta indica i.e. Ai5, Ai 11, Ai 13, Ai 14 and Ai 34. Molecular data were analyzed using Popgene and NTsys version 2.0. The result showed that number of alleles (na) ranging from 1.80 to 2.80, and percentage of polymorphic loci (PPL) ranging from 60 to 80 %. The level of genetic diversity showed that mindi in North Sumatra has moderate value (He: 0.244 to 0.269). It indicated that assessment of genetic diversity of M. azedarach North Sumatra is necessary for improvement and conservation of a species.
Short Communication: Assessment of reclamation success of former limestone quarries in Tuban, Indonesia, based on soil arthropod diversity and soil organic carbon content DWI OKTAFITRIA; KUNTUM FEBRIYANTININGRUM; NURUL JADID; NIA NURFITRIA; FAHMI RAHMADANI; ALFIAN AMRULLAH; DEWI HIDAYATI
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200634

Abstract

Abstract. Oktafitria D, Febriyantiningrum K, Jadid N, Nurfitria N, Rahmadani F, Amrullah A, Hidayati D. 2019. Assessment of reclamation success of former limestone quarries in Tuban, Indonesia, based on soil arthropod diversity and soil organic carbon content. Biodiversitas 20: 1743-1747. The reclamation for sustainable ecosystem in mined land, including revegetation, is an obligatory program stipulated by the Indonesian government. This study evaluated the ecological improvement of revegetated land at the reclamation sub-areas (RSAs) of former limestone quarries in Tuban, East Java, Indonesia. The RSAs were coded as RSA 2010, RSA 2014, and RSA 2016 which represented the initial year of revegetation as well as the reclamation soil-material, namely the rejected soil-products, topsoil, and spoils, respectively. Soil insects were collected from ten sampling plots at each RSA using pitfall traps. The data of arthropods were analyzed to describe the community structure by determining the Shannon Diversity Index (H’), Simpson’s index (D), Sorensen's similarity and Shannon evenness index (E). The soil organic carbon (SOC) content from the soil composites was analyzed according to the Walkley and Black method. The results showed that SOC value at RSA 2010 (1.851±0.38%) was higher than that at SRA 2014 (1.694±0.29%) and SRA 2016 (0.947±0.10%). There were 18 families found from eight orders of soil insects (Coleoptera, Diplura, Diptera, Entognatha, Hemiptera, Hymenoptera, Neuroptera, and Orthoptera) and one order from terrestrial crustacea i.e., Isopoda, family Tylidae. The ecological indices of RSA 2014 (H’=1.15; D=0.47; E=0.61) and RSA 2016 (H’=1,19; D=0.47; E=0.57) were higher than those of RSA 2010 (H’=0,61; D=0.71; E=0.43). The Pearson analysis indicated moderate negative correlation (r=0.55) between soil arthropod diversity index and SOC. The diversity of soil arthropods at reclaimed area indicated that the reclamation was successful. Based on the study, we recommend that reclamation is done using mine spoil or topsoil rather than rejected soil products.
DNA barcoding reveals underestimated species diversity of mantis shrimp larvae (stomatopods) in Banten Bay, Indonesia ABINAWANTO ABINAWANTO; MARIANA D. BAYU INTAN; WISNU WARDHANA; ANOM BOWOLAKSONO
Biodiversitas Journal of Biological Diversity Vol. 20 No. 6 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200637

Abstract

Abstract. Abinawanto, Intan MDB, Wardhana W, Bowolaksono A. 2019. DNA barcoding reveals species diversity of mantis shrimp larvae (stomatopods) from Banten Bay, Indonesia. Biodiversitas 20: 1758-1763. Larvae of stomatopods can be morphologically identified by linking between larval and adult form, but it's difficult applied in the laboratory because of requirement of condition to rearing larvae collected either from plankton, or spawning adults in the laboratory. Molecular methods are the alternative approach to gather accurate taxonomic identification. One of molecular methods is DNA barcoding based upon sequence diversity in cytochrome c oxidase subunit 1 (COI). Research on stomatopod larvae diversity and distribution at six stations in Banten Bay has been studied from October 2013 to March 2014. This study was conducted to identify the diversity of stomatopod larvae through DNA barcoding and also to examine the distribution of stomatopod larvae in Banten Bay. DNA barcoding was used to identify mantis shrimp larvae in Banten Bay, Indonesia. Partial mitochondrial COI were obtained for 37 larvae, revealing five distinct molecular operational taxonomic units (MOTUs). All MOTUs distinctively fell into Squillidea clade. Two Molecular Operational Taxonomic Units, MOTUs were successfully identified to species level (i.e. Anchisquilla fasciata), while three others remained identified to genus level (i.e. Stomatopoda spp). The intraspecific variation of COI ranged from 0% to 3.1% (Kimura 2-parameter distance), whereas interspecific divergence ranged from 5.9% to 20.4%. These results imply that COI genes are suitable for species identification of stomatopod larvae in this area, though the number of unidentified species was higher than the identified ones. This is likely because of the limited database in GenBank. In addition, the two identified species represents new records for this area, suggesting that the mantis shrimp in the area have been underestimated based on traditional biodiversity measures. We recommend to develop a taxonomically-comprehensive DNA barcoding database to improve the accuracy and feasibility of using DNA barcoding for species identification of Indonesia mantis shrimps.

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