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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Assessing the status of pinuchu as indicator of socio-ecological resilience of Chaya Socio-Ecological Production Landscape, Ifugao, Philippines JHOANNA O. SANTIAGO; INOCENCIO E. BUOT, JR
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190605

Abstract

Santiago JO, Buot Jr IE. 2018. Assessing the status of pinuchu as indicator of socio-ecological resilience of Chaya Socio-Ecological Production Landscape, Ifugao, Philippines. Biodiversitas 19: 2010-2019. Safeguarding biodiversity should be one of the priorities of the community to attain resilience. This study was aimed to determine the conditions of the woodlot (pinuchu) along the altitudinal zones of the mountain ranges in Chaya and correlated this to resilience. Specifically, it aimed to (i) determine the species composition, structure, and diversity of the tree species in selected pinuchu and (ii) determine the environmental variables associated with the vegetation composition. Vegetation data were subject to classification and ordination analyses. Species diversity was also calculated using Shannon-Wiener index. The tree diversity showed an overall diversity of (H'=3.83) corresponding to relatively high diversity. According to canonical correspondence analysis (CCA), elevation, temperature, and human disturbances influenced the vegetation composition. It is recommended that to sustain resilience of the CSEPL, pinuchu should be biodiversity-rich at all times. Policymakers should use native species as planting material in the reforestation program instead of using fast-growing exotic species.
Metagenomic analysis of microbial community in over-fermented tempeh ARTINI PANGASTUTI; RIZAL KHOIRUN ALFISAH; NUR IFFAH ISTIANA; SITI LUSI ARUM SARI; RATNA SETYANINGSIH; ARI SUSILOWATI; TJAHJADI PURWOKO
Biodiversitas Journal of Biological Diversity Vol. 20 No. 4 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d200423

Abstract

Abstract. Pangastuti A, Alfisah RK, Istiana NI, Sari SLA, Setyaningsih R, Susilowati A, Purwoko T. 2019. Metagenomic analysis of microbial community in over-fermented tempeh. Biodiversitas 20: 1106-1114. Tempeh is a traditional Indonesian food which is made from soybeans through a fermentation process using Rhizopus as a starter culture. Tempeh is now considered as a functional food with many beneficial effects to human health beyond its nutritional value. The microbial community during the further fermentation process of tempeh give typical characteristic taste and flavor. Therefore the over-fermented tempeh is used as a flavoring in some dishes. Metagenomic analysis needed to know the involvement of microbial communities since most of the microbes involved in further fermentation process are unculturable. This research aimed to study the diversity of the microbial community in the over-fermented tempeh (72 hours) using the metagenomic analysis. Seventeen OTUs of fungi in over-fermented tempeh were detected. Among them, 9 OTUs had significant abundance: six species were identified as Tryblidiopsis sichuanensis, Candida sp.2_1., Kluyveromyces marxianus, Trichosporon asahii, Trichosporon gracile, and Trichosporon ovoides, one species was identified in the order level Mucorales, and two fungi species could not be determined. Species of the order Mucorales was the dominant species in over-fermented tempeh (72 hours) with a relative abundance of 62.46%, followed by Kluyveromyces marxianus with a relative abundance of 3698%. Meanwhile, 132 OTUs of the bacterial community was detected, the predominant 10 genera were Chryseobacterium, Lactococcus, Lactobacillus, Streptococcus, Acetobacter, Novosphingobium, Comamonas, Escherichia, Klebsiella, and Stenotrophomonas, in which Lactobacillus agilis, Lactococcus sp., and Klebsiella sp., were most abundant with relative abundance of 27%, 26.3%, and 13% respectively.
Genetic diversity and population structure of Siganus fuscescens across urban reefs of Seribu Islands, Northern of Jakarta, Indonesia ADITYA BRAMANDITO; BEGINER SUBHAN; TRI PRARTONO; NURLITA PUTRI ANGGRAINI; HEDI INDRA JANUAR; HAWIS H. MADDUPPA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190603

Abstract

Bramandito A, Subhan B, Prartono T, Anggraini NP, Januar HI, Madduppa HH. 2018. Genetic diversity and population structure of Siganus fuscescens across urban reefs of Seribu Islands, Northern of Jakarta, Indonesia. Biodiversitas 19: 1993-2002. Jakarta bay and Seribu Islands reefs have been affected by anthropogenic activities which causing them degraded and low quality of the ecosystem. However, lack of study has been conducted to investigate the effect on reef fish population due to change in ecosystem quality. Therefore, this study was undertaken to analyze genetic diversity and population structure of Siganus fuscescens population against heavy metals (Pb, Cd, and Cu) concentration across Jakarta Bay and Seribu Islands environmental gradient. Genetic diversity and structuring of S. fuscescens populations were determined using partial sequences of the mitochondrial cytochrome C oxidase I. Monitoring of heavy metal was measured by Atomic Absorption Spectroscopy (AAS) shows highest concentration of heavy metal (Pb, Cd, and Cu) was observed in the southern of Seribu Islands, closest to Jakarta. However, the diversity of haplotype obtained from each location indicates a varied range between 0,1429 (Pramuka Island, located in the center) and 0,75 (Untung Jawa Island, located in the south). Linear regression test reveals that Cu elements had a moderate effect (R2 adjusted = 0.665) to the nucleotide diversity of the fish. The study shows some populations of S. fuscescens have been affected by heavy metal and could be an alarm to manage this artisanal targeted fish in the Seribu Islands.
Ethnoecology: The traditional landscape of Osing Tribe in Banyuwangi, Indonesia BUDI PRASETYO; TATIK CHIKMAWATI; EKO BAROTO WALUJO; ERVIZAL AMZU
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190604

Abstract

Prasetyo B, Chikmawati T, Walujo EB, Amzu E. 2018. Ethnoecology: The traditional landscape of Osing Tribe in Banyuwangi, Indonesia. Biodiversitas 19: 2003-2009. There is a concern that the decreasing area of Osing tribe in Banyuwangi may cause the decline of the farming culture that has been rooted in their daily lives. This research aimed to analyze the traditional knowledge of Osing tribe in the management and utilization of landscape units generated from farming activities and the benefit assessment of landscape units based on gender perception. The research used explorative method with emic and ethic approaches. The importance of each landscape element is assessed through MLA (Multidisciplinary Landscape Assessment) by scoring with Pebble Distribution Method (PDM) in Focus Group Discussion (FGD). The respondents consisted of females and males with three age categories: 11-17 years, 18-45 years, and ? 46 years. The results of PDM showed that the Osing tribes in the three villages of study sites considered their yards as the most important landscape unit in their lives (PDM = 42.82), followed by paddy field (PDM = 26.05), garden (PDM = 16.12), and finally field (PDM = 15.01). Based on gender perception, a house with a yard had higher importance (PDM = 45.09) in female’s perception than in male’s (PDM = 40.55). Three canopy strata or layerswere found in village landscapes, namely yard, paddy field, garden, and field.
Spatio-temporal influence of physicochemical parameters on phytoplankton assemblage in coastal brackish lagoon: Gomishan Lagoon, Caspian Sea, Iran MOHAMMAD JABBARI; MORTEZA SALAHI; RASOUL GHORBANI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190606

Abstract

Jabbari M, Salahi M, Ghorbani R. 2018. Spatio-temporal influence of physicochemical parameters on phytoplankton assemblage in coastal brackish lagoon: Gomishan Lagoon, Caspian Sea, Iran. Biodiversitas 19: 2020-2027. The objective of this study was to determine the spatiotemporal distribution pattern of phytoplankton assemblage due to physico-chemical heterogeneity in coastal brackish lagoon of Gomishan. An inter-annual cycle of sampling period (April 2014-March 2015) and spatially stratified random sampling were established to examine 24 spatiotemporal scenarios. Water samples were preserved in 1 and 0.5 liter dark Polythene bottles from each station for assessing plankton community and chlorophyll a, respectively. The applied multivariate approach including hierarchical cluster analysis for (dis)similarity test of environmental factors, principle component analysis (PCA) and canonical correspondence analysis (CCA) was used to illustrate the pattern of phytoplankton variability in relation to environmental characteristics. The results showed that mean salinity, temperature, pH, total nitrogen, phosphorus, silica, turbidity, and electrical conductivity (EC) were 22.8±5.9 (ppt), 23.4° C, 8.18, 2.49 (mg.l-1), 0.258 (mg.l-1), 3.39 (mg.l-1), 42.12 (NTU), and 3.78 (dS/m3), respectively. Scenarios S5AT, S5W, S6W, S6AT were distinguished from other scenarios with more than 90% similarity, subsequently S1SU and S5SU with about 80% similarity. Inter-annual mean density of total phytoplankton (cell.l-1) was 2.45×106, whereas in northern sector it was constant with only a peak in June, but in southern sector it was more tolerant, so in April it tended to increase with a peak (7.2×106) in July which was the maximum density over the year. The phytoplankton assemblage of the lagoon comprised 47 species from 5 different classes including Bacillariophyta, Pyrrophyta, Chlorophyta, Cyanophyta, and Euglenophyta.
The diversity of endophytic fungi associated with Piper nigrum in the tropical areas: A recent study from Kutai Kartanegara, Indonesia SOPIALENA SOPIALENA; SUYADI SUYADI; MUHAMAD SAHIL; JULI NURDIANA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190607

Abstract

Sopialena, Suyadi, Sahil M, Nurdiana J. 2018. The diversity of endophytic fungi associated with Piper nigrum in the tropical areas: a recent study from Kutai Kartanegara, Indonesia. Biodiversitas 19: 2028-2034. This research aimed to identify the diversity of endophytes fungal in the root and leaves of Piper nigrum Linn. This research contributes to the knowledge gaps by focusing the discussion on the Endophytic fungal communities of Piper nigrum Linn in tropical areas at Kutai Kartanegara, Indonesia. Two certain plots within the study area were selected based on the different characteristics of topographic contours. The locations, named Plot A was characterized by ramps area, while plot B was sloping or hilly area. A total of 55 isolates were obtained from the root and the leaves of healthy plants, 35 isolates were from Plot A and the other 20 isolates were from plot B. Based on Shannon index (H’), both of the plots corresponded to the same genus; namely Aspergillus sp., Fusarium sp., Nigrospora sp., and Trichoderma sp, and categorized as medium diversity. In this regards, this study confirms that the genus Aspergillus sp. and Fusarium sp. represent a large part of the diversity of Endophytes fungi. As the study indicates that plot B has higher diversity of endophytic fungi compared to plot A, it shows that the hilly area turns out to be a better location for Piper nigrum Linn.
Morphometric characteristics of two seagrass species (Enhalus acoroides and Cymodocea rotundata) in four small islands in North Maluku, Indonesia YUNITA RAMILI; DIETRIECH G. BENGEN; HAWIS H. MADDUPPA; MUJIZAT KAWAROE
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190608

Abstract

Authors. 2018. Morphometric characteristics of two seagrass species (Enhalus acoroides and Cymodocea rotundata) in four small islands in North Maluku, Indonesia. Biodiversitas 19: 2035-2043. Seagrass has an important ecological role as a protector of coastlines and small islands. It is known to be capable of forming phenotypic plasticity through morphometric variation as a response to its environmental conditions. This study aimed to determine the distribution and morphological differences between populations of two important seagrass species (Enhalus acoroides and Cymodocea rotundata) in the waters around four small islands in North Maluku. The study was conducted at two stations in each of Ternate Island and Maitara Islands, three stations at Tidore Island and one station at Hiri Island. A line transect method was used to collect seagrass samples. Morphometric characteristics included leaf sheath length, leaf length, leaf width, rhizome diameter, root length, root diameter, and internode length were measured. Discriminant analysis was performed to describe morphometric characteristics distinctive of the four islands. Leaf sheath length, leaf length, rhizome diameter, and root length of E. Acoroides differed significantly among the populations from the various islands except for leaf width. Meanwhile, leaf sheath length, leaf width, rhizome diameter, root length, and internode length differed significantly in C. rotundata among the populations from different islands except for leaf length.
Ethnobotany of tree ferns in Pasir Menyan Hamlet, Sukamandi Village, Subang, West Java, Indonesia SURYANA SURYANA; JOHAN ISKANDAR; PARIKESIT PARIKESIT; RUHYAT PARTASASMITA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190609

Abstract

Suryana, Iskandar J, Parikesit, Partasasmita R. 2018. Ethnobotany of tree ferns in Pasir Menyan Hamlet, Sukamandi Village, Subang, West Java, Indonesia. Biodiversitas 19: 2044-2051. Tree ferns are plants that grow mostly in the highlands, such as in the forest area of ??Tangkuban Perahu Mountain, Subang, West Java, Indonesia. The existence of tree ferns and their population are threatened, along with forest damage and over-exploitation. The present study was directed to examine the local knowledge of the community around the forest area of ??Mount Tangkuban Perahu in term of local names, utilization, suitability to grow, and conservation efforts of tree fern. This research was conducted in Pasir Menyan Hamlet, Sukamandi Village, Subang, West Java in March-June 2017. The method used in this study was mixed-method, a combination of qualitative and quantitative, while some field techniques, including observation, semi-structured interviews, structured interviews, and botanical survey of tree ferns were carried out. The results of the study showed that it was recorded 8 landraces of tree fern were recognized by informants, namely pakis tihang, pakis sieur, bagedor, pakis minyak, pakis payung, pakis cempor, pakis bulu, and sijabrig. In terms of local knowledge on tree ferns, people with ages 50-59 years old recorded a right a higher percentage of tree ferns than the children and younger people. Regarding education, the result showed that a low level of education had the highest level of knowledge of local names and utilization of tree ferns as vegetables, ornamental plants, growing media, and for handicrafts because of they still intensive interaction with forest ecosystem and tree ferns. On the basis conservation of tree ferns, the rural people of Sundanese people have a tradition to prohibit (pamali) to cut forest on the river bank, open slopes, closed forests, damaged forest areas, and in the valleys. In addition, traditional conservation practice on tree ferns has recorded, for example, rural people of Pasir Menyan Hamlets have traditional prohibited to open sacred forest, including to take of tree ferns.
Short Communication: Isolation and identification of actinomycetes potential as the antagonist of Dickeya zeae pineapple soft rot in Lampung, Indonesia TITIK NUR AENY; JOKO PRASETYO; RADIX SUHARJO; SUSKANDINI R. DIRMAWATI; EFRI EFRI; AININ NISWATI
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190610

Abstract

Aeny TN, Prasetyo J, Suharjo R, Dirmawati SR, Efri, Niswati A. 2018. Isolation and Identification of actinomycetes potential as the antagonist of Dickeya zeae pineapple soft rot in Lampung, Indonesia. Biodiversitas 19: 2052-2058. This study was aimed to collect and identify actinomycetes from the rhizosphere of pineapple with the potency as a biocontrol agent of Dickeya zeae, the pathogen of pineapple soft rot. Soil samples were collected from four different pineapple plantations in Lampung Province, in December 2016. Samples were air-dried, serially diluted, and plated on modified ISP2 medium and several single characterized colonies were sub cultured and purified. The growing colonies were grouped into different colour series based on their aerial-mycelia and substrate-mycelia colors. Antagonistic activity of the actinomycetes isolates were evaluated against Dickeya zeae by agar diffusion method using the same medium agar lawn with the bacterial cultures. Selected antagonistic actinomycete isolates with the biggest clear zone formation were further characterized and identified molecularly based on 16S rDNA sequences. The results showed that as many as 34 actinomycete isolates collected from pineapple rhizosphere produced clear zones. Two isolates, namely GGF2-i5 and GGF4-i18, presented the biggest clear zone were proposed as the potential antagonist strains against D. zeae and identified as Streptomyces parvulus and Streptomyces hygroscopicus subsp. hygroscopicus, respectively. Both of the 16S rRNA gene sequences from those strains were deposited in the GenBank with the accession number MH170279 and MH170280, respectively.
Ethnobotany of banana plants (Musa x paradisiaca) of Palintang Hamlet, Cipanjalu Village, Bandung, West Java, Indonesia JOHAN ISKANDAR; JOKO KUSMORO; MIRA MUBAROKAH; RUHYAT PARTASASMITA
Biodiversitas Journal of Biological Diversity Vol. 19 No. 6 (2018)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d190611

Abstract

Iskandar J, Mubarokah M, Kusmoro J, Partasasmita R. 2018. Ethnobotany of banana plants (Musa x paradisiaca) of Palintang Hamlet, Cipanjalu Village, Bandung, West Java, Indonesia. Biodiversitas 19: 2059-2072. Rural people of West Java have traditionally farmed many varieties (landraces) of bananas (Musa x paradisca L) in the agroecosystem of homegardens and gardens. Because of the increasing human population, rapid rate of agricultural land conversion to other land uses, intensive penetration of market economy to rural areas, and introduction and selection in favor of banana landraces having good taste for culinary and high market price, some landraces of bananas have become rare, even locally extinct in rural areas. The main purpose of this study was to elucidate local knowledge of Palintang people on landraces, population, local farming management, and utilization of bananas. The mixed methods, qualitative and quantitative were applied in this study, while some techniques of collecting primary data, mainly observation, participant observation, semi-structured interview, structured interview, semi-quantitative population of banana plant were carried out. The results of study showed that 18 landraces of bananas have been recorded in Palintang hamlet. Local knowledge or traditional ecological knowledge of Palintang people on bananas have been predominantly obtained from individual personal experiences and from the parents and ancestors, inherited from generation to generation via oral communication. Most banana landraces cultivated by Palintang farmers have superior culinary aspect, particularly good taste, and high price. As a result, some landraces of bananas considered not having good taste and having low price have rarely been planted in the gardens. Banana trees have traditionally been cultivated by farmers of Palintang based on traditional ecological knowledge and which has been culturally embedded. There are 7 main stages of banana cultivation, namely preparation of banana suckers, land preparation, planting, caring, harvesting, post-harvesting management, and utilization of bananas for home consumption and sale through village middlemen and market. The banana cultivation has dramatically changed due to both ecosystem and rural community’s socio-cultural changes.

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