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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Butterfly as bioindicator for development of conservation areas in Bukit Reban Kambing, Bukit Belading and Bukit Tukau, Johor, Malaysia NORRADIHAH ISMAIL; Aqilah Awg Abdul Rahman; Maryati Mohamed; Mohd Fadzelly Abu Bakar; Lili Tokiman
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210141

Abstract

Abstract. Ismail N, Rahman A A A, Mohamed M, Abu Bakar M F, Tokiman L. 2020. Butterfly as bioindicator for development of conservation areas in Bukit Reban Kambing, Bukit Belading and Bukit Tukau, Johor, Malaysia. Biodiversitas 21: 334-344. Butterflies are often used as indicator surrogates to evaluate the quality of ecosystems. This is made possible due to their sensitive responses toward environmental fluctuations and habitat changes. Butterflies were collected opportunistically using aerial nets at three hill dipterocarp forests; Bukit Reban Kambing (BRK), Bukit Belading (BB) and Bukit Tukau (BT) of Johor, Malaysia from 8th to 11th March 2016. The objectives of this study are to provide a checklist of butterflies of the hills and evaluate habitat suitability in an effort to support the proposal to gazette the hills as part of the Gunung Ledang protected area. A total of 60 individuals belonging to 23 species, 21 genera, and five families were recorded. Comparing the three hills, BRK recorded the greatest individual and species numbers, followed by BT and BB. BRK recorded the highest Shannon diversity index, H’ (2.272) value, whereas BB presented the highest value of species evenness index, E’ (0.945). MaxEnt modeling of the butterflies in BRK, BB, and BT showed a network of high habitat suitability areas connecting Gunung Ledang and our sampling locations. Despite limited sampling effort, this baseline data could possibly strengthen the effort for gazettement and prevent further pressure from mining activity and land conversion.
Above-ground carbon stock at Kamojang Regions, West Java, Indonesia DWIKI DANANG KUNCORO; TEGUH HUSODO; JOKO KUSMORO; RANDI HENDRAWAN; SUROSO; FEMI AFRIYANTI; ERRI NOVIAR MEGANTARA
Biodiversitas Journal of Biological Diversity Vol. 21 No. 4 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210459

Abstract

Abstract. Kuncoro DD, Husodo T, Kusmoro J, Hendrawan R, Suroso, Afriyanti F, Megantara EN. 2020. Above-ground carbon stock at Kamojang Regions, West Java, Indonesia. Biodiversitas 21: 1749-1754. Kamojang is one of the regions that have the potential for carbon dioxide (CO2) sequestration and carbon storage for the southern side of West Java Province, Indonesia. The existence of vegetation as a provider of ecological services in the form of carbon dioxide (CO2) absorption and carbon storage certainly has a very important role, either in living conditions (biomass) or dead conditions (necromass). The aims of this study are to determine the total amount of above-ground carbon stock and determine the type of land-use that has the greatest carbon storage potential in the Kamojang region. Data collection in this research combines destructive and non-destructive methods. The measurement of biomass was carried out by the non-destructive sampling method for the category of sapling, poles, trees and necromass and the destructive sampling method for the category of undergrowth and litter. The results showed total above-ground carbon stored in Kamojang area is 4,995.75 t C with the largest potential value of carbon stock in the pine production forest of 163.79 t C/ha.
Developmental, morphological and molecular variation of commercial Ganoderma spp. accessions from southern Vietnam Viet The Ho; Thi Ngoc Ha Vo; Ngoc Giau Le
Biodiversitas Journal of Biological Diversity Vol. 20 No. 12 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d201230

Abstract

Abstract. Ho VT, Vo TNH, Le NG. 2019. Developmental, morphological and molecular variation of commercial Ganoderma spp. accessions from southern Vietnam. Biodiversitas 20: 3684-3689. In Vietnam, the market value of Ganoderma spp. increases markedly recently due to the high demand as an effective medicine. However, the breeding programs for this mushroom are still less effective due to the poor knowledge of genetic composition. This study was conducted to investigate the diversity of some commercial Ganoderma spp. accessions from southern Vietnam using both traditional techniques using developmental and morphological characterization, and molecular method using ISSR markers. A total of nine Ganoderma spp. samples were collected from production areas and research institutes in southern provinces of Vietnam and targeted for developmental and molecular characterization. Developmental and morphological variations among accessions were evaluation. In addition, 20 ISSR markers were also utilized for further understanding genetic composition of these mushrooms. The obtained measurement data show a large variation among the studied Ganoderma spp. accessions in term of mycelia growth, diameter, shape, and dried weight of fruiting bodies. Molecular data from 20 ISSR markers also supported genetic variation of the examined samples. Based on the results of this study, the samples of Ganoderma spp. accessions from southern Vietnam can be divided into two main groups which are not correlated to geographical locations of sample collection sites. The results are potential for classification and provide new insights for molecular assisted selection of Ganoderma spp.
Lead (Pb) toxicity effect on physio-anatomy of bead-tree, jatropha, castor bean and Philippine-tung grown in water culture Hamim Hamim; Hanifatunisa; Hadisunarso; Luluk Setyaningsih; Deden Saprudin
Biodiversitas Journal of Biological Diversity Vol. 20 No. 12 (2019)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d201231

Abstract

Abstract. Hamim, Hanifatunisa, Hadisunarso, Setyaningsih L, Saprudin D. 2019. Lead (Pb) toxicity effect on physio-anatomy of bead-tree, jatropha, castor bean and Philippine-tung grown in water culture. Biodiversitas 20: 3690-3697. Heavy metal contamination in both land and water has been intensively studied because of their broad impact for the environment. Bead-tree (Melia azedarach), Jatropha (Jatropha curcas), castor bean (Ricinus communis) and Philippine tung (Reutealis trisperma) are kinds of non-edible oil-producing species, that are able to grow well on degraded lands and may have potential use for phytoremediation of heavy metals contaminated areas. This study aimed to analyze the response of bead-tree (Melia azedarach), jatropha (Jatropha curcas), castor bean (Ricinus communis) and Philippine-tung (Reutealis trisperma) to lead (Pb) contaminant in water culture experiment based on morphological, physiological and anatomical parameters. Two months old plants were transferred to the media containing Hoagland solution. After three weeks of planting, Pb (NO3)2 treatments with five concentrations, i.e. control (0 mM), 0.5 mM, 1 mM, 2 mM, and 3 mM were added together with Hoagland replacement and the plants were treated for three weeks. The growth, anatomical and physiological parameters were observed during the treatment until three weeks. The results showed that Pb treatment, especially with higher concentration, dramatically decreased plant growth, such as plant height, number of leaves, as well as shoot and root dry weight of all the species. Lead treatment triggered the emergence of free radicals and oxidative stress as indicated by a significant increase of malondialdehyde (MDA) content, while it decreased chlorophyll content of all the species. The higher concentration of Pb (NO3)2 caused the thickness of upper epidermis, lower epidermis, and spongy mesophyll tissue to decrease significantly which contributed to the decrease of leaves thickness. Among the species, Philippine-tung was the most tolerant of Pb toxicity. This species is potential to be used in phytoremediation program of lead-contaminated land such as gold mine area as well as heavy industrial areas.
Short Communication: Mosses from Laiwangi-Wanggameti National Park, Sumba, East Nusa Tenggara, Indonesia Florentina Indah Windadri; Dewi Rosalina
Biodiversitas Journal of Biological Diversity Vol. 21 No. 2 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210215

Abstract

Abstract. Windadri F I, Rosalina D. 2020. Short Communication: Mosses from Laiwangi-Wanggameti National Park, Sumba, East Nusa Tenggara, Indonesia. Biodiversitas 21: 538-545. Sumba Island is an island within the Lesser Sunda Islands. Despite the high diversity and the uniqueness of the area, research to explore the biodiversity in the national park have been rarely conducted. This study was aimed to do inventory of mosses diversity in Laiwangi-Wanggameti National Park, Sumba Island, East Nusa Tenggara Province to enrich the limited information regarding biodiversity in the region. The inventory was done using explorative methods at two research sites (i.e. Laiwangi and Wanggameti), mainly around lake, along river banks, stream banks, site of mount tracking trail and forests. All the mosses found in the study site were collected and then identified based on existing literature and herbarium records. We found 33 species of mosses belonging to 24 genera and 16 families. There were 22 species that shared similarity between Sumba Island and the Lesser Sunda Islands. We proposed that there were 11species of mosses as new records of their distribution in the Lesser Sunda Islands. The ecology and taxonomical status of mosses in the study sites were also described in this paper.
Diversity of endophytic fungi from Vernonia amygdalina, their phenolic and flavonoid contents and bioactivities Praptiwi Praptiwi; Ahmad Fathoni; Muhammad Ilyas
Biodiversitas Journal of Biological Diversity Vol. 21 No. 2 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210202

Abstract

Abstract. Praptiwi, Fathoni A, Ilyas M. 2019. Diversity of endophytic fungi from Vernonia amygdalina, their phenolic and flavonoid contents and bioactivities. Biodiversitas 20: 436-441. There are nine endophytic fungi in total associated with stem and leaves of Vernonia amygdalina were determined for their total phenolic and flavonoids content as well as assessed for their antibacterial and antioxidant activities. Total phenolic and flavonoid contents were determined by spectrophotometric methods. The antibacterial activity was performed using Thin Layer Chromatography (TLC) - Bioautography assay against S.aureus and E.coli. The antioxidant activity was carried out using TLC- Bioautography by DPPH scavenging assay. Broth serial microdilution assay was used to determine the minimum inhibitory concentrations (MIC) and the half-maximum inhibitory concentration (IC50). Among the identified isolates, there was one isolate of Phomopsis sp., two isolates of Phoma sp., two isolates of Lasiodiplodia sp., two isolates of Colletotrichum sp. and two isolates of Phyllosticta sp. The results showed that the phenolic contents were ranging from 0.53-116.03 mg GAE/g extract, flavonoids contents were ranging from 81.12 to 390.21 mg quercetin equivalent (QE)/g extract. MICs of endophytic fungi against S.aureus and E.coli ranged from 256 to >256 µg/mL and >256 µg/mL respectively that categorized as moderate antibacterial activity. The antioxidant activity of endophytic fungi associated with V. amygdalina was >128 µg/mL, and the antioxidant activity index (AAI) was 0.24.
Direct economic benefits and human dependence toward Gunung Merapi National Park, Indonesia Ruky Umaya; Hardjanto; Rinekso Soekmadi; Satyawan Sunito
Biodiversitas Journal of Biological Diversity Vol. 21 No. 3 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210318

Abstract

Abstract. Umaya R, Hardjanto, Soekmadi R, Sunito S. 2020. Direct economic benefits and human dependence toward Gunung Merapi National Park, Indonesia. Biodiversitas 21: 982-993. Merapi (Java, Indonesia) is recognized as the most active volcano in Indonesia. This area has also gazetted as a national park, called Gunung Merapi National Park (GNMP), despite the existence of humans who live adjacent to the park with high dependency on its resources. The objectives of this study were to determine direct use value (DUV) and investigate human dependence toward the goods and services generated from GNMP. The research was conducted in 27 sub-villages. In total 277 respondents and 62 key informants were selected using purposive sampling and 9 times focus group discussion. The DUV was estimated using market price approach. The results of this study found that the DUV of GMNP was IDR 87,947,589,505 year-1, generated from direct benefit of grasses for animal feedstock (41.74%), sand mining (31.32%), water consumption (20.23%), fuelwood collection (3.57%), ecotourism activities (1.65%), land management for agriculture (1.48%), and orchid conservation program (0.01%). The dominance of DUV derived from grasses collection, sand mining and water consumption was highly correlated with the characteristics of sub-villages communities, influenced by the events of eruption of Merapi volcano, changes in legal status of forest function and market situations. Sub-village communities have historically developed reciprocal relationships with Merapi volcano and its surrounding ecosystem in terms of ecological, economic, and cultural aspects, and they played important roles in natural resources management of Merapi volcano. The findings of this study suggest that an important strategy for GMNP authority is by positioning sub-village communities and their norms as resource beneficiaries and partners in managing the park, highlighting that their existence should not be neglected.
Short Communication: Identification of Leptin gene in crossbred beef cattle Laksa Ersa Anugratama; Tety Hartatik
Biodiversitas Journal of Biological Diversity Vol. 21 No. 1 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210129

Abstract

Abstract. Anugratama LE, Hartatik T. 2020. Short Communication: Identification of Leptin gene in crossbred beef cattle. Biodiversitas 21: 226-230. Leptin is a gene that affects animal weight. Leptin gene is known to control body weight, feed intake, energy expenditure, immune function, and reproduction. This study aims to identify the diversity of the Leptin gene in crossbred beef cattle, Sumba Ongole cattle, Brahman cross cattle, Bali cattle, buffalo, sheep, and goat by comparing with four GenBank data of cattle. Crossbred beef cattle obtained from Klaten, Central Java, Indonesia. Leptin nucleotide sequences were analyzed using BioEdit to identify Single Nucleotide Polymorphism (SNP). To create amino acid change in Leptin gene, the coding sequence of exon 2 was established using BioEdit ver. 7.0.5. Phylogenetic tree and genetic distance have been analyzed based on the Leptin gene using MEGA 10.1.1 program. The result shows that eight variations of SNP were found in exon 2. The phylogenetic tree represents that crossbreed beef cattle, Sumba Ongole cattle, Brahman cross cattle, Bali cattle, Bos taurus, Bos indicus, Bos frontalis, Bos grunniens, Bubalus bubalis are in the same cluster with various genetic distance. The results of this study are expected to provide genetic information that will be used for further research on the relationship between Leptin gene polymorphisms to animal weight.
Spatial distribution and habitat characteristics of Macadamia hildebrandii in the Sintuwu Maroso Protection Forest, Central Sulawesi, Indonesia Akhbar; SITI NURYANTI; NAHARUDDIN
Biodiversitas Journal of Biological Diversity Vol. 21 No. 2 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210245

Abstract

Abstract. Akhbar, Nuryanti S, Naharuddin. 2020. Spatial distrubution and habitat characteristics of Macadamia hildebrandii in the Sintuwu Maroso Protection Forest, Central Sulawesi, Indonesia. Biodiversitas 21: 770-779. Research on the spatial distribution of Macadamia hildebrandii Steen (haleka) tree species is one of the important stages in the preservation of Sulawesi's endemic plants. The purpose of this research was to obtain information regarding the spatial distribution of M. hildebrandii in the area of Sintuwu Maroso Forest Management Unit, Central Sulawesi and the relationship between its occurrence with habitat characteristics in term of land and climate variables. Data was collected by establishing sampling plots using stratified systematic sampling based on land cover, namely primary and secondary dryland forests. Index of dispersion was used to calculate the distance between population while the chi-square test was used to investigate the relationship between M. hildebrandii population and variables of land and climate. The results showed that the M. hildebrandii trees mostly grew in the mountain rain zone ecosystem, clumped in groups according to the characteristics of the dominant natural habitat. The important characteristics of its habitat were it had red-yellow podzolic-lithosol soil type, altitude of ? 1,500 m asl, slope class of ? 25%, middle slope aspect, tineba volcano rock formation (which is volcanic sedimentary rocks), metamorphic parent material, secondary dryland forests, and rainfall of 1,600-2,000 mm/year. The results of study can be used as baseline information for the conservation and sustainable utilization, including cultivation, of M. hildebrandii especially in the montane zone of rain forest ecosystem in Sulawesi.
Pseudomonas plecoglossicida as a novel bacterium for phosphate solubilizing and indole-3-acetic acid-producing from soybean rhizospheric soils of East Java, Indonesia Meli Astriani; SITI ZUBAIDAH; ABDUL LATIEF ABADI; ENDANG SUARSINI
Biodiversitas Journal of Biological Diversity Vol. 21 No. 2 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d210220

Abstract

Abstract. Astriani M, Zubaidah S, Abadi AL, Suarsini E. 2020. Pseudomonas plecoglossicida as a novel bacterium for phosphate solubilizing and indole-3-acetic acid-producing from soybean rhizospheric soils of East Java, Indonesia. Biodiversitas 21: 578-586. The use of synthetic fertilizers to grow soybean (Glycine max (L.) Merrill) in a long time, can increase the risk of environmental damage. Therefore, the current study aimed to find phosphate solubilizing bacteria that can produce indole-3-acetic acid (IAA) hormone to minimize the use of chemical fertilizers. Superior isolates selected through characterization of phosphate solubilization activity on Pikovskaya medium, screening of IAA producing bacteria, quantitative estimation of phosphate solubilizing activity using a spectrophotometer, hypersensitivity assay, antagonist within isolate assay, and molecular identification of selected bacterial isolates using 16S rRNA sequencing with primer forward 63f and primer reverse 1387r. Among the isolated bacteria, isolate Arj8 showed the highest phosphate solubilizing activity and IAA production. Molecular identification indicated that isolate Arj8 shared 100% similarity with Pseudomonas plecoglossicida. The highest phosphate solubilizing activity (75.39 mg/L) and IAA production (38.89 ppm) recorded on day-3. Multiple potentialities of P. plecoglossicida as phosphate solubilizing and IAA producing bacterium are a novel finding in the development of bioinoculants as bio-fertilizers that can reduce dependency on synthetic chemical fertilizers.

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