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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,269 Documents
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Species composition, relative abundance, and distribution of land snail species in Mt. Lantoy Key Biodiversity Area, Cebu, Philippines RAAMAH ROSALES; EDGARDO LILLO; STEVE MICHAEL ALCAZAR; LEA COLITA; JOED CABALLERO; ARCHIEBALD BALTAZAR MALAKI
Biodiversitas Journal of Biological Diversity Vol. 21 No. 11 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211152

Abstract

Abstract. Rosales R, Lillo E, Alcazar SM, Colita L, Caballero J, Malaki AB. 2020. Species composition, relative abundance, and distribution of land snail species in Mt. Lantoy Key Biodiversity Area, Cebu, Philippines. Biodiversitas 21: 5438-5447. This study aimed to establish an inventory of land snails in Mt. Lantoy, Cebu Island, Philippines. A two-person team conducted sampling on eight permanent plots with an elevation range of 182 m-691 m. The study has listed a total of 872 individuals represented by 25 species belonging to 15 genera and nine families. Seven families belong to the air-breathing pulmonate group, Order Stylommatophora: Bradybaenidae, Camaenidae, Trochomorphidae, Achatinidae, Ariophantidae, Helicarionidae, Helicinidae. Two families were under the prosobranch group, Order Caenogastopoda: Cyclophoridae, and Pupinidae. The Cyclophoridae was the richest family with five species, followed by Bradybaenidae, Camaenidae, Helicinidae, having four species. The Trochomorphidae and Helicarionidae have three species. The Pupinidae has two species, while the Achatinidae and Ariophantidae has one species each. There were three (3) endemic and ten (10) new island record species collected and identified with four (4) species that were classified as rare. Rysotta otaheitana Ferussac 1821 was the most abundant, representing 25.22% of the total number of individuals. The Leptoma nitidum ancilis Bartsch 1918 has the widest geographical distribution with a constancy rate of 100%. Widespread species appear to be more abundant, while other species were geographically restricted in few study areas.
Genetic variability of lemon basil (Ocimum × africanum Lour.) from Indonesian archipelago based on morphological and inter-simple sequence repeats markers Kurnia Makmur; TATIK CHIKMAWATI; SOBIR SOBIR
Biodiversitas Journal of Biological Diversity Vol. 21 No. 12 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211259

Abstract

Abstract. Makmur K, Chikmawati T, Sobir. 2020. Genetic variability of lemon basil (Ocimum × africanum Lour.) from Indonesia based on morphological characters and ISSR markers. Biodiversitas 21: 5948-5953. Lemon basil (Ocimum × africanum Lour.) or kemangi is a highly beneficial plant, yet still underutilized. Therefore, providing necessary information on genetic diversity of this species is essential for further utilization. The aim of this study was to elucidate genetic diversity of 33 accessions of O. × africanum collected from four Islands of Indonesia along with three accessions of Ocimum basilicum L. Morphological observation was conducted on 37 morphological characters following the International Union for the Protection of New Varieties of Plants descriptor guidelines; subsequently, 13 ISSR primers were employed in molecular analysis. Both morphological and molecular data were analyzed based on simple matching similarity index using UPGMA method. Morphologically, O. × africanum and O. basilicum were clearly separated at the similarity index of 0.52, and among two species were divided into two groups according to two either character. ISSR analysis using 13 ISSR primers produced 111 DNA bands, and 108 of them (97.29%) were polymorphic. Cluster analysis based on ISSR data could not explicitly separate O. × africanum and O. basilicum accessions. Besides, Ocimum accessions collected from the same area did not always cluster into one group.
Thermostability, photostability, and toxicity of clove oil nanoparticles against Cryptolestes ferrugineus (Stephens) (Coleoptera: Laemophloeidae) Silvi Ikawati; Toto Himawan; Abdul Latief Abadi; Hagus Tarno
Biodiversitas Journal of Biological Diversity Vol. 21 No. 10 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211041

Abstract

Abstract. Ikawati S, Himawan T, Abadi AL, Tarno H. 2020. Thermostability, photostability, and toxicity of clove oil nanoparticles against Cryptolestes ferrugineus (Stephens) (Coleoptera: Laemophloeidae). Biodiversitas 21: 4764-4771. Problems related to the essential oils as insecticides are their volatility, poor solubility in water and environmental degradation (such as caused by high temperatures and UV light) which can adversely affect the application. An ideal botanical insecticide formulation would maintain the level of the main compounds adequate for pest control. This study was to evaluate the stability of polyethylene glycol (PEG) coated nanoparticles loaded with clove (Syzygium aromaticum) essential oil to high temperature and UV light also their toxicity to C. ferrugineus. There is a reduction in nanoparticle size after heating from 257 to 173 nm and there is no difference in size distribution. After heating and UV-light treatment, eugenol content in free clove oil decreased significantly, while on nanoparticles there were not significantly changed, that indicated greater stability on the nanoformulation. The median lethal concentration (LC50) of CO-NPs to C. ferrugineus adults value for 72 and 120 hours was 0.734 and 0.676%.
Fluorescent pseudomonads from plant rhizosphere as biological agent to control white root disease and growth-promoting on rubber plants HUSDA MARWAN; Sri Mulyati; S Sarman; Islah Hayati
Biodiversitas Journal of Biological Diversity Vol. 21 No. 11 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211139

Abstract

Abstract. Marwan H, Mulyati S, Sarman S, Hayati I. 2020. Fluorescent pseudomonads from plant rhizosphere as biological agents to control white root disease and growth-promoting on rubber plants. Biodiversitas 21: 5338-5343. White root disease (Rigidoporus lignosus) is a serious problem of rubber plantation in Indonesia, including in Sumatera. The fungal infection is often difficult to detect, infection develops rapidly and can cause plant death if left untreated since the early stage, and thus using biological agents might be an efficient way to overcome the disease. This research was aimed to explore fluorescent pseudomonads from rubber plant rhizosphere that can inhibit the growth of the fungal pathogen, characterize fluorescent pseudomonads isolated as biological control agent and plant growth promoter, and apply the isolate to rubber plants to control the disease and growth of plants. Twelve out of the 76 fluorescent pseudomonads isolated from several rhizospheres of rubber plants were found to be antagonistic to white root fungi. Fluorescent pseudomonads have various characteristics such as chitinolytic activity, phosphate solvent, and nitrogen fixation. The application of the antagonistic isolates on rubber seedlings was able to increase growth and suppress the colonization of R. lignosus on rubber plant roots.
Phylogeographic and molecular characterization of Pronghorn spiny lobster (Panulirus penicillatus Olivier, 1791) in the Southern Coast of Java and Lombok, Indonesia Irwani; Diah Permata Wijayanti; ANINDIA WIRA SATRIA; AGUS SABDONO
Biodiversitas Journal of Biological Diversity Vol. 21 No. 12 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211227

Abstract

Abstract. Irwani, Wijayanti DP, Satria AW, Sabdono A. 2020. Phylogeographic and molecular characterization of Pronghorn spiny lobster (Panulirus penicillatus Olivier, 1791) in the Southern Coast of Java and Lombok, Indonesia. Biodiversitas 21: 5691-5697. Panulirus penicillatus is one of the most important lobster species in Central Java. It is one of the most populous species in the southern part of Java and Lombok. However, uncontrolled catching causes a decrease in the population of P. penicillatus. Despite such human threats, information about the taxonomic status of this species is limited. Several previous reports on the taxonomy of this species have always been based on the morphological features that cause ambiguous identification. Therefore, this study aimed to establish the relationships of P. penicillatus in southern parts of the southern part of Java and Lombok by using the molecular technique. Twelve samples were collected from four study areas of the southern coast of the southern part of Java and Lombok and identified using DNA barcoding technique. DNA barcoding technique was used for the first time to identify P. penicillatus in this region. This study demonstrated that all specimens belonged to P. penicillatus. However, one specimen (PPK-06) showed high intraspecies nucleotide divergence that formed a distinct subclade. Therefore, the specimen (PPK-06) could represent a cryptic species within P. penicillatus that needs to be studied further.
Conservation status of large mammals in protected and logged forests of the greater Taman Negara Landscape, Peninsular Malaysia Gopalasamy Reuben Clements; SUSANA ROSTRO-GARCÍA; JAN F. KAMLER; SONG HORNG LIANG; ABDUL KADIR BIN ABU HASHIM
Biodiversitas Journal of Biological Diversity Vol. 22 No. 1 (2021)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d220133

Abstract

Abstract. Clements GR, Rostro-García S, Kamler JF, Liang SH, Hashim AKBA. 2021. Conservation status of large mammals in protected and logged forests of the greater Taman Negara Landscape, Peninsular Malaysia. Biodiversitas 22: 272-277. Peninsular Malaysia contains a large community of IUCN Threatened mammal species, although recent records in some protected areas is unknown. The greater Taman Negara Landscape is one of the national priority areas for tiger conservation, but the recent occurrence of large mammals in the landscape has not been sufficiently updated. Here, we conducted systematic camera-trap surveys in protected and logged forests of the Taman Negara Landscape: Merapoh in Taman Negara National Park (TNM), and the Dungun Timber Complex (DTC), respectively. We found that the diversity of large mammals in TNM appeared to be the same between 2000 and 2016. The detection frequencies (DF) of several Threatened species, such as Malayan tiger (Panthera tigris jacksoni), dhole (Cuon alpinus), and Malayan pangolin (Manis javanica), were similar between surveys, suggesting the relative abundance of these species likely remained stable during the past 16 years. However, the DF of Asian elephant (Elephas maximus) and Malayan tapir (Tapirus indicus) were lower compared to 2000. In DTC, overall mammalian diversity was relatively lower than in TNM, primarily due to the non-detection of two large ungulates: gaur (Bos gaurus) and sambar (Rusa unicolor). Nevertheless, we recorded several other Threatened species of mammals, suggesting there is potential for this forest reserve to preserve some of Peninsular Malaysia’s most Threatened mammal species. Our results suggest that the Taman Negara Landscape is still an important global site for the conservation of several Threatened species, and we recommend an increase in wildlife law enforcement efforts to ensure the survival of its large and diverse mammalian community.
Short Communication: Cross-species amplification of microsatellite markers developed for Jatropha curcas within five species of Jatropha Darmawan Saptadi; Bambang Heliyanto; Sudarsono Sudarsono
Biodiversitas Journal of Biological Diversity Vol. 21 No. 11 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211111

Abstract

Abstract. Saptadi D, Heliyanto B, Sudarsono. 2020. Short Communication: Cross-species amplification of microsatellite markers developed for Jatropha curcas within five species of Jatropha. Biodiversitas 21: 5072-5076. The transferability of SSR markers can be used to access the genetic diversity of related species. There are four close relatives of Jatropha curcas L in Indonesia, which can be utilized as a new diversity source through the interspecific crossing. This research was conducted to determine the ability of cross-species amplification of SSR markers developed from J. curcas to other Jatropha species (J. integerrima, J. multifida, J. gossypifolia, J. podagrica). It also investigated the relationship between these species. Out of 28 primers checked,11 primers showed cross-species amplification in all the species tested. Primer pairs EU099519, EU099528, and EU099525 have no transferability to other species. The overall percentage of polymorphism (PP) among all species tested was 95%, with the mean genetic similarity (GS) was 0.34. Least PP (17.35%) and highest GS (0.60) was found between pairs of J. podagrica and J. multifida. The correlation between the PP with GS was relatively high (0.75). The farthest and closest genetic distance was found between J. curcas/J. gossypifolia and J. podagrica/J. multifida, respectively. Further, selected primers from this study can be utilized in species differentiation, molecular identification of interspecific hybrids, and exploiting the genetic resource.
Diversity of termites (Isoptera) on industrial forest plantation of Eucalyptus pellita stands of tropical ecosystem in Riau, Indonesia SRI RAHAYU PRASTYANINGSIH; Suryo Hardiwinoto; MUSYAFA MUSYAFA; CAHYONO AGUS DWI KORANTO
Biodiversitas Journal of Biological Diversity Vol. 21 No. 11 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211158

Abstract

Abstract. Prastyaningsih SR, Hardiwinoto S, Musyafa, Koranto CAD. 2020. Diversity of termites (Isoptera) on industrial forest plantation of Eucalyptus pellita stands of tropical ecosystem in Riau, Indonesia. Biodiversitas 21: 5498-5505. Eucalyptus pellita is an alternative tree species for pulp and paper of industrial forest plantation. One of the forest plantation’s negative effect is the loss of biodiversity and vulnerable to pest and disease. Termites are one of the pests attacking the forest plantations and play an important role in the ecological process. Need a better understanding of the termite role ecosystem process in E. pellita stands. This research aimed to determine the diversity of termite species found in E. pellita stands at different rotation and ages of stands. Termite diversity sampled by the transect sampling method in the 4th and 5th rotation with four-level ages (1, 2, 3, 4-years-old). The transect area was divided into 24 plots (100 m x 2 m). The termites in the Eucalyptus stand consist of two families (Termitidae and Rhinotermitidae), five subfamilies (Termitinae, Macrotermitinae, Nasutitermitinae, Rhinotermitinae, and Coptotermitinae), and eight species (Discupiditermes nemorosus, Macrotermes gilvus, Termes rostatus, Amitermes dentatus, Microcerotermes sp., Nasutitermes matangensis, Schedorhinotermes medioobscurus, and Coptotermes havilandi). The diversity index (H) in the 4th rotation was 1.95, while in the 5th rotation was 1.63, with a similarity in the Sorensen Index of 87.71%. The existence of termites is dominated by the wood feeder group. The species richness of the termites at the two rotations increased with the increase of the stand age.. The relative abundance composition of termites in the 5th rotation, is higher than the 4th rotation. Termite occurrence was influenced by necromass, tree biomass, humidity, and temperature.
Quantitative assay of Indole Acetic Acid-producing bacteria isolated from several lakes in East Java, Indonesia Sulistya Ika Ramadhani Sulistya; Sitoresmi Prabaningtyas Sitoresmi; Agung Witjoro Agung; Rina Triturani Saptawati Rina; Achmad Rodiansyah Achmad
Biodiversitas Journal of Biological Diversity Vol. 21 No. 11 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211153

Abstract

Abstract. Ramadhani SI, Prabaningtyas S, Witjoro A, Saptawati TR, Rodiansyah A. 2020. Quantitative assay of Indole Acetic Acid-producing bacteria isolated from several lakes in East Java, Indonesia. Biodiversitas 21: 5448-5454. Biofuel is an alternative to fossil fuels that are environmentally friendly with low emissions. Biofuel from biomass microalgae, especially Chlorella vulgaris, has an essential role in biofuel production. Increasing biomass microalgae was done by co-culture between microalgae and bacteria. This research aims to determine the potential of bacterial isolates to produce the IAA hormone and identify the highest isolate with the ability to synthesis IAA from four lakes in East Java. This research was conducted by culturing bacterial isolates in the Tryptic Soy Broth (TSB) to add tryptophan media in various periods of incubation. The absorbance was measured with UV-Vis spectrophotometry at a wavelength of 530 nm for determining IAA-production from bacterial isolates. The results showed that the "12" code bacterial isolate from Ranu Grati produced the highest IAA hormone concentration, with an average of 30.23 ppm. The morphological characterization of the highest IAA-producing bacteria showed that isolate included the Enterobacteriaceae group and phenotypic characterization include Enterobacter cloacae complex (ECC).
The dynamics of Arthropod diversity and abundance in rice field ecosystem in Central Lombok, Indonesia Ruth Stella Petrunella Thei; Abdul Latief Abadi; Gatot Mudjiono; Didik Suprayogo
Biodiversitas Journal of Biological Diversity Vol. 21 No. 12 (2020)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d211249

Abstract

Abstract. Thei RSP, Abadi AL, Mudjiono G, Suprayogo D. 2020. The dynamics of Arthropod diversity and abundance in rice field ecosystem in Central Lombok, Indonesia. Biodiversitas 21: 5850-5857. Arthropods have roles as pests, decomposers, pollinators, and natural enemies of pests. Natural enemies play a vital role in pest population control by predation or parasitism. A study of the arthropod community in the rice field ecosystem was conducted in Central Lombok, Indonesia from December 2009 to March 2010 in order to elucidate the composition, structure, and dynamic diversity of arthropods present. Arthropod sampling was done by pitfall traps, yellow pan traps, and insect net. Arthropod dynamic diversity, especially of natural enemies, was determined by diversity index, dominance index, evenness analysis, and pictorial analysis. Based on taxonomical perspective, as many as 98 arthropod species were found, including 85 insect species from 59 families and 9 orders; and 13 spider species in 6 families. Based on the ecological functions, predator arthropods were the most common (33 species, dominated by spiders), but the phytophage arthropods had the most species richness (49.34%). A high Shannon index (3.18) and Pilou index (0.7) indicated dominant arthropods in the ecosystem. Arthropod species richness and diversity increased alongside rice development and decreased after harvest.

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