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Biodiversitas Journal of Biological Diversity
Published by Universitas Sebelas Maret
ISSN : 1412033X     EISSN : 20854722     DOI : https://doi.org/10.13057/biodiv/d230231
Core Subject : Science, Agriculture,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology
The Biodiversitas Journal was first published in 2000 by the Department of Biology, FMNS, Universitas Sebelas Maret, Surakarta, Indonesia, then in 2006 it was co-published by the Society for Indonesian Biodiversity and that department; since 2017 it was also hosted by Smujo. From 2003-2012 it was accredited by DGHE, Ministry of Education, R.I., since 2014 was indexed by Scopus, where DOAJ and Google Scholar was indexed first.
Arjuna Subject : Biokimia, Genetika dan Biologi Molekuler - Biokimia, Genetika dan Biologi Molekuler (Lain-Lain)
Articles 6,315 Documents
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Diversity of bivalves on the north coast of Lamongan, East Java, Indonesia Viola Atlanta; Reni Ambarwati; Dwi Anggorowati Rahayu; Nova Mujiono
Biodiversitas Journal of Biological Diversity Vol. 23 No. 8 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230850

Abstract

Abstract. Atlanta V, Ambarwati R, Rahayu DA, Mujiomo N. 2022. Diversity of bivalves on the north coast of Lamongan, East Java, Indonesia. Biodiversitas 23: 4263-4271. Biodiversity in Indonesian waters is very abundant, one of which is bivalves. This study aimed to analyze the diversity, abundance, uniformity and dominance of bivalves, as well as to analyze the habitat profile of bivalves in the North Coast of Lamongan. Bivalves sampling was carried out at Kutang Beach and Joko Moersodo Beach. There were three research stations consisting of three sub-stations on each beach. At each sub-station, it was taken the plot of 5×5 m. Each plot contained five subplots of 1×1 m. The habitat profiles studied were temperature, pH, salinity, and turbidity and the type of substrate. Samples were identified based on morphological characters. The research data obtained were analyzed descriptive qualitatively. The results revealed that the bivalves found in the North Coast of Lamongan included Anadara antiquata, Vasticardium elongatum, Donax faba, Asaphis sp., Gari elongata, Serratina perplexa, Gafrarium pectinatum, Heterocardia gibbosula, Marcia hiantina, Marcia japonica, Marcia opima, Meretrix sp., and Venerupis aspera. The index value of bivalves’ diversity at the North Coast of Lamongan was 1.13-2.201. The habitat profile of the bivalves in the North Coast of Lamongan was as follows: temperature 29.3-31.7ºC, salinity 25-32 ppt, pH 7.59-8.18, turbidity 10.6-17.3 NTU and the dominant type of substrate was sandy mud. Bivalves were more commonly found on beaches with dense mangroves.
Non-edible plants traded in traditional markets of Beringharjo, Yogyakarta and Pasar Baru, East Kalimantan, Indonesia: The role of biocultural system BUDIAWATI SUPANGKAT ISKANDAR; JOHAN ISKANDAR; SUROSO SUROSO; RAHMAN LATIF ALFIAN; DEDE MULYANTO
Biodiversitas Journal of Biological Diversity Vol. 23 No. 9 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230932

Abstract

Abstract. Iskandar BS, Iskandar J, Suroso, Alfian RL, Mulyanto D. 2022. Non-edible plants traded in traditional markets of Beringharjo, Yogyakarta and Pasar Baru, East Kalimantan, Indonesia: The role of biocultural system. Biodiversitas 23: 4657-4669. The trade of various non-edible plants in some traditional Indonesian markets has a close relationship with the biological and cultural diversity, as well as local knowledge of the community. Therefore, this study aims to examine the non-edible plant diversity used to make products sold in traditional markets, their various functions and parts, as well as the market chain. The study was conducted in Beringharjo, Yogyakarta, and Pasar Baru, Balikpapan, East Kalimantan to resemble regions with different cultural backgrounds. Data collection used the qualitative method with an ethnobotanical approach. The results showed that 25 species belonging to 16 families of non-edible plants were traded in the traditional markets of Beringharjo and Pasar Baru. The various parts being traded in both markets had numerous functions, including pilgrimage ceremonies at the cemetery, handicraft/decoration, and betel chewing. The market chain begins with farmers from villages, middlemen, traders in the traditional market, and then finally to consumers. The diversity of non-edible plants traded was determined by the biophysical and cultural aspects of the local community where the market is located. Therefore, traditional markets play an important role as hallmarks of a particular social culture by reproducing on a small scale the cultural and biological diversity. They are also essential in the acquisition and transmission of traditional knowledge of biodiversity.
Diversity of herbs and spices plants and their importance in traditional medicine in the South Aceh District, Indonesia ADNAN ADNAN; ZIDNI ILMAN NAVIA; MEGA SILVIA; MAULIDA ANTIKA; ADI BEJO SUWARDI; BAIHAQI BAIHAQI; MUHAMMAD YAKOB
Biodiversitas Journal of Biological Diversity Vol. 23 No. 7 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230761

Abstract

Abstract. Adnan, Navia ZI, Silvia M, Antika M, Suwardi AB, Baihaqi, Yakob M. 2022. Diversity of herbs and spices plants and their importance in traditional medicine in the South Aceh District, Indonesia. Biodiversitas 23: 3836-3843. Kluet people are one of the ethnic communities living in Southern Aceh, Indonesia. Various herbs and spices plants are used by the Kluet people as a traditional medicine in treating diseases and disorders. The study aimed to investigate the diversity of herbs and spices plants and their importance in the traditional medical system. It was based on field surveys, plant collection, and semi-structured interviews with the local people. Interviews were performed with 355 informants selected by using the random sampling technique. A total of 30 medicinal plant species, consisting of 18 families, have been documented. Curcuma longa, Kaempferia galanga, Zingiber officinale, Citrus x aurantiifolia, Alpinia galanga, Averrhoa bilimbi, Elettaria cardamomum, Allium sativum, Cocos nucifera, and Syzygium aromaticum are the most popular medicinal plants known by Kluet people. More than 40% of traditional knowledge related to the use of herbs and spices as traditional medicine was obtained from their families/friends/neighbors. Traditional knowledge is thought to decline among generations. It is supposedly due to lifestyle changes as a result of modernization. The documentation and promotion of traditional medicine systems through formal and non-formal education may contribute to the conservation of biodiversity and traditional knowledge.
Characterization and identification of agarwood-producing plants (Aquilaria spp.) from North Aceh, Indonesia, based on morphological and molecular markers LUKMAN LUKMAN; DINY DINARTI; ULFAH JUNIARTI SIREGAR; MAMAN TURJAMAN; SUDARSONO SUDARSONO
Biodiversitas Journal of Biological Diversity Vol. 23 No. 9 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230955

Abstract

Abstract. Lukman, Dinarti D, Siregar UJ, Turjaman M, Sudarsono. 2022. Characterization and identification of agarwood-producing plants (Aquilaria spp.) from North Aceh, Indonesia, based on morphological and molecular markers. Biodiversitas 23: 4861-4871. Agarwood is one of the non-timber export commodities important as raw materials for bioindustry. There are 26 agarwood-producing plant species in Indonesia belonging to three families (Thymelaeaceae, Euphorbiaceae, and Fabaceae). This study aims to identify the agarwood-producing plant species in North Aceh District, Aceh Province, Indonesia, based on their morphological and molecular characters. The evaluated morphological characteristics include the bark and leaf structures of endemic plants. Molecular characterization was carried out by sequencing of matK, ITS, and trnL-trnF genes. The collected data were analyzed using the appropriate software, such as R software, BlastX, Geneious Prime and MEGA X. The evaluated 66 accessions were clustered into two major groups based on their morphology. Group 1 consisted of 10.61% of the evaluated accessions is identified as Aquilaria beccariana. Group 2 was further classified into two subclusters (Group 2a and 3b). Group 2a consisted of 10,61% of the accessions as A. malaccensis and Group 2b consisted of 78,79% of the accessions as A. microcarpa. All samples are identified as A. malaccensis based on the matK DNA sequences. Meanwhile, Groups 1 are identified as A. beccariana and Group 2a and 2b as A. microcarpa based on the ITS sequences. Based on the trnL-trnF sequences, Groups 1 and 2a was identified as A. malaccensis and Group 2b as A. microcarpa. 
Diversity of fauna species in the mangrove ecosystem of Youtefa Bay Tourism Park, Papua, Indonesia ANNITA SARI; AMBO TUWO; AMRAN SARU; CHAIR RANI
Biodiversitas Journal of Biological Diversity Vol. 23 No. 9 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230915

Abstract

Abstract. Sari A, Tuwo A, Saru A, Rani C. 2022. Diversity of fauna species in the mangrove ecosystem of Youtefa Bay Tourism Park, Papua, Indonesia. Biodiversitas 23: 4490-4500. Youtefa Bay Tourism Park is a mangrove ecosystem in Jayapura City, Papua, Indonesia with high importance for biodiversity conservation as well as providing livelihood for local communities. Yet, information regarding the biological diversity of the mangrove ecosystem is lacking. This information is important to assess the state of the mangrove and to support its sustainable management of this area. This research aimed to determine the faunistic diversity of Youtefa Bay Tourism Park. The research was conducted from August 2019 to February 2020 using line transect method with quadrant to record species and the number of individuals. The results showed that in the studied area there were six, five and 27 species of birds, reptiles and macrozoobenthos, respectively. The density of birds ranged from 2.35-23.94 ind/ha with Sterna hirundo of the Sternidae family having the highest density. The reptile species density ranged between 20 and 66.67 ind/ha, while the most common macrozoobenthos species were from Gastropoda and Pelecypoda classes. The highest and lowest relative abundance for birds were S. hirundo and Sula lencogastes with 20% and 5%, while that of reptiles were Mabouya sp. and Varanus salvadorii with 37% and 15%, and for macrozoobenthos species were Duplicaria duplicata and Solen sp. with 9.93% and 0.35%, respectively. The Diversity Index (H’) of birds, reptiles, and macrozoobenthos ranged of 0.29-1.39, 0.27-1.61, and 2.92-3.04, respectively. The diversity index was as low at Abepantai and Youtefa Bay Pier, while moderate at Tobati, Enggros, and Nafri Villages. Water quality parameters indicated that the waters in Youtefa Bay Tourism Park were still suitable for the survival of biota and the preservation of the mangrove ecosystem. The results of this study might be useful for monitoring the status of the mangrove ecosystem in the future and for baseline information in developing sustainable management of Youtefa Bay Tourism Park.
Antibiotic resistance pattern of Extended-Spectrum ?-Lactamase (ESBL) producing Escherichia coli isolated from broiler farm environment in Pasuruan district, Indonesia SHEILA MARTY YANESTRIA; FIDI NUR AINI EKA PUJI DAMEANTI; BETI GISTAWATI MUSAYANNAH; JUNIANTO WIKA ADI PRATAMA; ADIANA MUTAMSARI WITANINGRUM; MUSTOFA HELMI EFFENDI; EMMANUEL NNABUIKE UGBO
Biodiversitas Journal of Biological Diversity Vol. 23 No. 9 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230911

Abstract

Abstract. Yanestria SM, Dameanti FNAEP, Musayannah BG, Pratama JWA, Witaningrum AM, Effendi MH, Ugbo EN. 2022. Antibiotic resistance pattern of Extended-Spectrum ?-Lactamase (ESBL) producing Escherichia coli isolated from broiler farm environment in Pasuruan district, Indonesia. Biodiversitas 23: 4460-4465. Escherichia coli is one of the bacteria that can be used as an indicator of environmental pollution. This bacterium has the ability to become an antimicrobial-resistant bacterium that impacts public health. The antimicrobial ability can develop into a bacterium that produces extended-spectrum ?-lactamase (ESBL). The purpose of this study was to reveal the occurrence of extended-spectrum ?-lactamase (ESBL) producing E. coli from a broiler farm environment in Pasuruan district and to describe the phenotypic pattern of E. coli producing ESBL that has been detected. A total of 175 samples were used in this study consisting of 115 samples of coop swabs and 65 samples of wastewater around the farm. The samples were isolated and identified to find E. coli by using different culture media viz. McConkey agar (MCA), eosin methylene blue agar (EMBA), Gram staining, indole test, methyl red Voges Proskauer (MR-VP), citrate, and triple sugar iron agar (TSIA). Detection of ESBL using the double disc synergy test (DDST) according to standard Clinical and Laboratory Standards Institute procedures and the VITEK®2 compact apparatus. The results of ESBL confirmation with DDST and VITEK®2 showed that 16 (9.14%) of the 175 environmental samples confirmed E. coli produced ESBL. The results of the VITEK®2 test also produced a phenotypic pattern of resistance properties of ESBL-producing E. coli and found 12 types of resistance patterns. The combination of “AM AMP ATM KZ CTX CRO CIP” and “AM AMP ATM KZ CTX CRO GM CIP SXT” are the 2 most common resistance patterns (18.75%), while the other 10 resistance patterns occur at the same level (6.25%). The data presented here confirmed the presence of ESBL-producing E. coli in the farm environment, which can contribute to the dissemination of MDR bacteria in the environment if not monitored. Therefore, the presence of ESBL-producing E. coli in Pasuruan is worrisome since it can lead to an impact on human health.
Genotyping and physiological characteristics of Acanthamoeba isolated from beaches in Phuket Province, Thailand NARUMON BOONMAN; CHANATE WANNA; JARUWAN CHUTRTONG; SRILERT CHOTPANTARAT; SIRIPHAN BOONSILP
Biodiversitas Journal of Biological Diversity Vol. 23 No. 9 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d230902

Abstract

Abstract. Boonman N, Wanna C, Chutrtong J, Chotpantarat S, Boonsilp S. 2022. Genotyping and physiological characteristics of Acanthamoeba isolated from beaches in Phuket Province, Thailand. Biodiversitas 23: 4377-4384. Acanthamoeba is widely distributed in water, soil, dust and air. Beaches are popular tourist destinations for water-related activities while they can also be reservoirs for Acanthamoeba to humans. This study aimed to determine the genotyping of Acanthamoeba in the beach environment and characterized their pathogenicity potential. A total of 63 samples were collected from six beaches in Phuket Province, Thailand. Twenty-one samples of each source including wet sand, dry sand and seawater, were collected and cultivated on 2% non-nutrient agar coated with heat-killed Escherichia coli. Acanthamoeba was found in 100% (n=21) wet sand, 52.4% (n=11) dry sand and 14.3% (n=3) seawater. Sequence analysis of the GTSA.B1 region in 18S rRNA revealed that 83.9% of sequenced isolates belonged to the T5 genotype and 16.1% belonged to the T4 genotype. The T5 genotype was predominant, differing from other reports of Acanthamoeba prevalence in natural sources. In vitro thermal and salt-tolerance showed that all isolates had growth rates similar to clinical Acanthamoeba isolates. This research was undertaken to increase awareness of human eye and brain infections caused by Acanthamoeba on beaches. Further studies on these Acanthamoeba isolates are still required such as co-culture assay between the trophozoites and human cell lines to confirm their pathogenicity as well as their susceptibility to the chemotherapeutic agents.
Analysis of the impact of the use of and of climate on the vulnerability and availability of Macaranga beillei in Côte d’Ivoire KOFFI KOUAO JEAN; YAO N’GUETTIA FRANCIS; TUO FATOU; KONE MOUSSA; ADAMA BAKAYOKO; JAN BOGAERT
Biodiversitas Journal of Biological Diversity Vol. 23 No. 10 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231050

Abstract

Abstract. Jean KK, Francis YN, Fatou T, Moussa K, Bakayoko A, Bogaert J. 2022. Analysis of the impact of the use of and of climate on the vulnerability and availability of Macaranga beillei in Côte d’Ivoire. Biodiversitas 23: 5396-5405. Macaranga beillei Prain is a vulnerable species of the Euphorbiaceae family, used in traditional medicine, and whose habitat is threatened by anthropogenic activities. This study is a contribution to the knowledge of the causes of the threat of this species in Côte d'Ivoire. The database used includes data from the SIG IVOIRE database (Gautier et al. 1999), the flora of Côte d'Ivoire (Aké Assi 2001), the GBIF website (Global Biodiversity Information Facility, wwwgbif.org) and the Paris Museum website (http://www.mnhn.fr/fr/collection). The QGIS software (Quantum GIS) version Lyon 2.12.3. and the MaxEnt (Maximum Entropy) model was used to produce potential distribution maps for the periods 1950-2000 and 2000-2050. A questionnaire was developed for the ethnobotanical survey. It emerges from this analysis that the Banco National Park is the most sampled locality with 38 samples out of 72, i.e. a rate of 52.77%. The value of the species vulnerability risk index (VI) is 2.46. In 2050, the range of the species will decrease by 6,696.127 km². The assessed extent of occurrence (EOO) and area of occupancy (AOO) values are 5,848.921 km² and 72.000 km² respectively. These results confirm that M. beillei is a vulnerable species.
Short Communication: Tabanid and muscoid hematophagous flies as potential vectors of Surra Disease in Yogyakarta, Indonesia Nila Qudsiyati; Raden Wisnu Nurcahyo; Dwi Priyowidodo; Soedarmanto Indarjulianto
Biodiversitas Journal of Biological Diversity Vol. 24 No. 2 (2023)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d240201

Abstract

Abstract. Qudsiyati N, Nurcahyo RW, Priyowidodo D, Indarjulianto S. 2023. Short Communication: Tabanid and muscoid hematophagous flies as potentialvectors of Surra Disease in Yogyakarta, Indonesia. Biodiversitas 24: 655-660. As a tropical country, Indonesia provides disease vectors and various kinds of parasitic diseases, such as surra disease caused by Trypanosoma evansi, which is transmitted by blood-sucking insects (flies), with a suitable environment. The disease is responsible for economic losses due to the decrease in beef production, and it can also be a potential zoonosis threatening human health. Disease prevention with vaccines is still unavailable. Therefore, treatment and prevention are carried out to eradicate flies with insecticides that can be hazardous to both humans and the environment. The present study aims at identifying the species and the phenology of potential surra fly vectors based on habitat differences. It was conducted from April to June 2022 in the Andini Mulyo farmer group, lowland Bantul and Maju Jaya farmer group, highland Kulon Progo, Daerah Istimewa Yogyakarta (DIY). The flies were caught using the NZi trap placed randomly or adjacent to Trypanosoma-positive cattle pens. The results showed that there were eight species of flies found in the Maju Jaya group, namely Tabanus megalops, T. rubidus, Tabanus sp., Stomoxys indica, S. calcitrans, S. sitiens, Haematobia irritans, and Musca domestica. Of them, except Tabanus megalops and Tabanus sp. were also recorded in Andini Mulyo group. The dominant vegetation found in Andini Mulyo and Tani Maju, respectively, are rice plants and wild plants, so the abundance of flies and the species richness of flies had a positive correlation with the Tani Maju group’s vegetation. The potential flies as surra disease vectors in the area found in surra disease cases were biting flies such as T. megalops, T. rubidus, Tabanus sp., S. indica, S. calcitrans, S. sitiens, Haematobia irritans. In addition, the hematogenous flies in Bantul and Kulon Progo could potentially cause the wider spread of surra disease and the decrease cow weight.
Short Communication: Genetic diversity of walnut blight-associated bacteria from China using rep-PCR CAO ZHENG; JIEQIAN ZHU; XUWANG YANG; BENZHONG FU
Biodiversitas Journal of Biological Diversity Vol. 23 No. 11 (2022)
Publisher : Society for Indonesian Biodiversity

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.13057/biodiv/d231118

Abstract

Abstract. Zheng C, Zhu J, Yang X, Fu B. 2022. Short Communication: Genetic diversity of walnut blight-associated bacteria from China using rep-PCR. Biodiversitas 23: 5681-5686. Walnut blight is caused by the bacterium Xanthomonas arboricola pv. juglandis (Xaj), is one of the most serious diseases in walnut production around the world. Understanding the genetic diversity of walnut blight pathogen is of great significance to developing a scientific and reasonable prevention and control strategy. The rep-PCR (Repetitive Sequence Polymerase Chain Reaction) technique is a powerful tool for analyzing plant pathogens. In this paper, using three pairs of rep-PCR universal primers (ERIC, BOX, and REP), a genetic diversity analysis was carried out on walnut blight-associated bacteria mainly isolated from different counties of Hubei Province, China. A study of 60 walnut blight-associated bacteria isolated in 2016 found that they had a high genetic similarity among them. There is no clear correlation between the genetic diversity of these isolates and their geographical or tissue origins. Interestingly, these clusters can also distinguish copper-resistant isolates from sensitive ones. Therefore, rep-PCR is a powerful tool to study the population of walnut pathogenic bacteria.

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