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INDONESIA
Journal of Tropical Biodiversity and Biotechnology
Published by Universitas Gadjah Mada
ISSN : 25409573     EISSN : 25409581     DOI : -
Core Subject : Science, Agriculture, Social,
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Environmental Science Immunology & microbiology
Journal of Tropical Biodiversity and Biotechnology (JTBB) is an authoritative source of information concerned with the advancement of tropical biology studies in the Southeast Asia Region. It publishes original scientific work related to a diverse range of fields in tropical biodiversity, functional biology, and biotechnology.
Arjuna Subject : -
Articles 327 Documents
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Antifungal Activity of Bacterial Isolates from Straw Mushroom Cultivation Medium against Phytopathogenic Fungi Masrukhin Masrukhin; Ade Lia Putri; Tri Ratna Sulistiyani; Muhammad Ilyas; Ismu Purnaningsih; Iwan Saskiawan; Muhammad Yusrun Niam
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 1 (2021): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.59235

Abstract

Several bacteria were isolated from straw mushroom (Volvariella volvacea) cultivation medium. There are three potential isolates previously characterized and has growth inhibition effect against V. volvacea. This screening result lead to the further study about the inhibition activity against phytopathogenic fungi. The aim of this research is to investigate the antifungal activity of three bacterial isolates against three phytopathogenic fungi and identification of the bacteria. The method used in this study are antifungal assay using co-culture method and disk difussion assay using the filtrate of each bacteria. The profile of antifungal compound was identified using ethyl acetate extract followed by evaporation and gas chromatography (GC-MS) analysis. Identification of each isolates was performed using 16S rDNA amplification and sequencing. Three phytopathogenic fungi i.e Cercospora lactucae (InaCC F168), Colletotrichum gloeosporides (InaCC F304) and Fusarium oxysporum f.sp. cubense (F817) were co-cultured with bacterial isolates C2.2, C3.8, and D3.3. The C3.8 isolate has highest average inhibition activity either using isolate and filtrate. The result relatively consistent against three phytopathogenic fungi. The metabolite profile of C3.8 isolate showed the Bis(2-ethylhexyl) phthalate as the main compound with 97% similarity. Bis(2-ethylhexyl) phthalate has potential effect as antibacterial and antifungal compound. According to EzBioCloud and GeneBank databases, the C2.2 isolate identified as Bacillus tequilensis, C3.8 as Bacillus siamensis and D3.3 as Bacillus subtilis subsp. Subtilis. This study also shows the potential of Bacillus siamensis C3.8 as biocontrol against phytopathogenic fungi.
Identification of Dendrobium (Orchidaceae) in Liwa Botanical Garden Based on Leaf Morphological Characters Mahfut Mahfut; Tundjung Tripeni Handayani; Sri Wahyuningsih; Sukimin Sukimin
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 1 (2021): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.59423

Abstract

Orchid is one of the most popular ornamental plants in the world. One of the orchid genera that is collected in a large number and known to have high morphological variations in the Liwa Botanical Garden is Dendrobium. However, to date, many Dendrobium collections have not been identified. Given the urgency of identification and the limitations of specimens in the field, especially flower organs, this study is important. This study aims to determine variations in morphological characters, phenetic relationships, and to identify Dendrobium collections based on leaf morphological characters in the Liwa Botanical Garden. Five accessions of Dendrobium were collected, namely CAT140, CAT 144, CAT 271, CAT 274, and IR015. Observation of 11 morphological characters leaves showed that leaf had high variations. The phenetic relationship based on the Gower similarity value and the UPGMA method shows that the Dendrobium in the Liwa Botanical Garden can be classified into 2 main groups formed with a similarity index value of 0.813. Based on Principle Component analysis values, it is known that the characters that have a large influence on grouping are the ratio of leaf length and width, leaf cross section, and leaf arrangement. The phenetic dendrogram topology is supported by the morphological character classification. The results of this study are expected to be basic information in the identification of natural orchids and conservation efforts in the Liwa Botanical Garden.
The Abundance of Fish Species in Branched (branching) and Table (tabulate) Coral Habitat on Tanjung Beach, Muna Island, Southeast Sulawesi Muhamad Tasylan; Muhammad Sirih
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 1 (2021): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.59481

Abstract

This research aimed to study the types and abundance of fish which was found in branched and table coral habitat. The quadrate transect method was used at the location of the habitat of branched and table corals. The observation was carried out for 3 days. It was conducted 3 times/day, in the morning, the afternoon, and the evening with ± 10 minutes of observation time for each observation. The method used was transect quadrat 5 m x 5 m with direct observation techniques by means of snorkeling. The types and numbers of individual fish were recorded using the visual census method. Snorkeling was done straightforwardly and looking around by following the contour of the reef. In branching coral habitat, 11 species of fish were found with a total of 66 individuals. On the other hand, on the tabulate reef habitat, there were 9 species of fish with a total of 50 individuals. Both habitats have different types of fish. In the branched coral habitats there were more individual than in the table reef habitats. Fish species found in branched coral habitat and table type fish habitat were different. In branched coral habitats were found more reef fish species than in table coral habitats. These results illustrated that the condition of the coral reefs at Tanjung Beach is still in good condition.
DNA Barcode of Barred Mudskipper (Periophthalmus argentilineatus Valenciennes, 1837) from Tekolok Estuary (West Nusa Tenggara, Indonesia) and Their Phylogenetic Relationship with Other Indonesian Barred Mudskippers Febrina Amaliya Rha'ifa; Deiandra Jasmine Audrea; Lukman Hakim; Tuty Arisuryanti
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 2 (2021): August
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.59702

Abstract

Barred mudskipper (Periophthalmus argentilineatus) has a potency to be developed as protein for human consumption and ornamental fish. The fish also has an important role in mangrove ecosystems. Nevertheless, many barred mudskippers have been considered a cryptic species. Therefore, accurate identification is needed to clarify species identification of the barred mudskipper using DNA barcoding.  This research aimed to identify barred mudskippers from Tekolok Estuary (East Lombok, West Nusa Tenggara, Indonesia) using COI mitochondrial gene as a DNA barcode and analyze genetic relationship with other barred mudskippers from several regions of Indonesia recorded in GenBank. This study used a PCR method with universal primers FishF2 and FishR2.  The data was then analysed using DNASTAR, BLAST, Mesquite, MEGA, DnaSP, BEAST, GenAlEx, and NETWORK. The results revealed that barred mudskipper from Tekolok Estuary has been verified as Periophthalmus argentilineatus. The results also exhibited that P. argentilineatus from Tekolok Estuary has a close genetic relationship to P.argentilineatus from Tukad Bilukpoh (Jembrana, Bali).  In addition, phylogenetic analysis showed that P.argentilineatus from Indonesia consisted of two clades with a genetic distance of approximately 6.64%. This analysis revealed evidence of the cryptic diversity of P.argentilineatus from Indonesia. Further detailed studies are needed to clarify whether Indonesian P.argentilineatus should be categorized into more than one species or single species with several subspecies.
Molecular Bird Sexing of Tanimbar Cockatoos (Cacatua goffiniana) by Using Polymerase Chain Reaction Method Ratu Fresa Khoirotunnisa Hidayat; Diana Savitri; Irhamna Putri; Warih Pulung Nugrahani; Aris Haryanto
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 2 (2021): August
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.59997

Abstract

This study aimed to determine the sex of Tanimbar Cockatoo (Cacatua goffiniana) birds by amplifying Chromodomain Helicase DNA-binding-1 (CHD-1) gene on Z and W sex chromosomes as well as to compare the quality of DNA extraction and PCR amplification products from samples derived from peripheral blood and plucked feathers. This work used five C. goffiniana birds which were collected from the Wildlife Rescue Center (WRC) in Pengasih, Kulon Progo, Yogyakarta. From each C. goffiniana, feather samples were collected by plucking feathers on the ventral wing and peripheral blood samples were taken by cutting their nails and collecting the blood into microhematocrit tubes containing heparin. The next stage was DNA extraction and DNA amplification on the CHD-1 gene using the PCR method by NP, P2, and MP primer pairs. Then, products of DNA extraction and PCR amplification were electrophoresed on 1.5% agarose gel and visualized under a UV light transilluminator with a wavelength of 260 nm. The visualization showed that samples from peripheral blood generated clearer DNA fragments compared to plucked feathers. Two of the five samples were male C. goffiniana and the other three samples were females. In the male Tanimbar Cockatoo was amplified a single DNA fragment of the Z sex chromosome in size of 300 bp, whereas in the female C. goffiniana was amplified double DNA fragments of Z and W sex chromosomes in size of 300 bp and 400 bp respectively. The DNA quality showed that the DNA quality from peripheral blood samples were better in quality than the DNA collected from plucked feather samples.
Nutrigenomic and Biomolecular Aspect of Moringa oleifera Leaf Powder as Supplementation for Stunting Children Agus Indra Yudhistira Diva Putra; Nyoman Budhi Wirananda Setiawan; Made Indira Dianti Sanjiwani; Ida Ayu Ika Wahyuniari; Agung Wiwiek Indrayani
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 1 (2021): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.60113

Abstract

Stunting is a global health problem. Based on WHO data, there are 161 million children who experience stunting. Breastmilk supplementation in the form of Moringa oleifera leaves powder is known to be beneficial in suppressing the stunting incidence. Moringa oleifera leaves powder contains protein, micronutrients, and minerals such as calcium, iron, sodium, vitamins C and E, beta carotene, and antioxidants (flavonoid acids, phenolic acids, glucosinolates, isothiocyanates, and saponins). The use of Moringa oleifera leaves powder in stunting cases has been carried out, but further studies in the aspects of nutrigenomics and molecular biology have not been conducted. This study is a literature review of relevant articles from www.pubmed.com, www.sciencedirect.com, and scholar.google.com. The author used keywords "stunting", "nutrigenomics", "biomolecular", and "Moringa oleifera". Pathogenic microbe such as Shigella and pathogenic E. coli ingestion can cause changes in DNA sequences in the stunting pathogenesis. Moringa oleifera leave powder can pass through nutrigenomic and biomolecular mechanisms. Some macro and micromolecules of Moringa oleifera leaves powder such as folate plays a role in DNA methylation; vegetable protein and fatty acids act as promoters in DNA sequences; vitamins act as cofactors for enzymes, antioxidant, and antiinflammation. Seeing various potential mechanisms in the aspects of nutrigenomic and molecular biology, Moringa oleifera leaves powder can be used in overcoming stunting. Further research is needed to give more review about cytokines and molecules included in this literature review.
Screening and Identification of Mushrooms Growth Promoting Bacteria on Straw Mushrooms (Volvariella volvacea) Indah Juwita Sari; I Nyoman Pugeg Aryantha
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 1 (2021): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.60618

Abstract

This research aimed to identify the indigenous Mushroom Growth Promoting Bacteria (MGPB) bacteria that can increase the growth of Volvariella volvacea. The research began by isolating indigenous MGPB from planting media of straw mushrooms in Karawang, Indonesia. The screening was performed to select bacterial isolates that can promote the highest growth of mushrooms by dual culture method on PDA media. There were 10 of the 58 highest bacterial isolates that have a positive effect on the vegetative growth of mushrooms. The 23K bacterial isolate was the most significant increase in mycelium growth compared to other isolates and bacteria-induced controls. A bacterial isolate 25K by gene analysis was identified by 16S rRNA (518F primer (5’- CCA-GCA-GCC-GCG-GTA-ATA-CG -3’) and 800R primer (5’- TAC-CAG-GGT-ATC-TAA-TCC -3’). The result from gene analysis shows that there are ~1550 base pairs products. BLAST analysis and phylogenetic tree adjustment results show that the closest diversity of this bacterial isolate 25K is Bacillus thuringiensis serovar konkukian str. 92-27 (equality value = 99%).
Ethnobotanical and Phytochemical Study of Bayur (Pterospermum javanicum Jungh.) on Sasak Tribe around Mount Rinjani National Park, West Lombok as a Conservation Effort Putri Sri Andila; Tri Warseno; I Putu Agus Hendra Wibawa; I Gede Tirta
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 1 (2021): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.61008

Abstract

Pterospermum javanicum Jungh. (Bayur) is a species belongs to the Pterospermum genera (Malvaceae). Several species of Pterospermum had been reported for their ethnobotanical usage, but the studies about ethnobotany information of Bayur and its secondary metabolite compounds were still limited which have been published. This study aimed to observe the ethnobotanical usage of Bayur and to examine the phytochemical contents of the acetone extract of Bayur flower from West Lombok. The ethnobotany information of Bayur was obtained through interviews with local people and more information on the ethnobotanical records of P. javanicum (Bayur) was conducted by reviewing the scientific literature. The chemical compounds of Bayur flower were analysed by the GC-MS method. The results revealed that Bayur was used by the Sasak community  around Gunung Rinjani National Park West Lombok for various purposes, such as traditional medicines, beverages, rigging, and building material. The phytochemical analysis showed that the acetone extract of Bayur flower from West Lombok contained 38 identified chemical components, representing 93.78% of the total compounds. The major contents of them were Lupeyl acetate (10.68%), p-n-Amylphenol (8.16%), Lauric acid (7.31%), N-(Methyl-d2)- Aniline (5,82%), and Pentanal (5.07%). This report was the first publication about the phytochemical contents of Bayur flower. It is expected that this study gives further information on the potentials of Bayur, especially about its secondary metabolite to support and prove the truth of the cultural concept of society in utilizing Bayur as a medicinal plant.
Seed and Germination Study of a New Guinea Endemic Plant Species Grevillea papuana Diels. Farid Kuswantoro
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 1 (2021): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.61115

Abstract

Grevillea papuana is a culturally important endemic plant species of New Guinea highland. Although G. papuana conservation and propagation attempts were already conducted, this species seed and germination characters information were still very limited. This study aimed to provide information regarding G. papuana seed and germination biology. Seed characteristic and germination trials were conducted in this study. Data analysis was conducted descriptively, while germination parameters were also calculated. G. papuana has a light, elliptic, and winged seed. The species germination was low and ununiform with phanerocotylar epigeal foliaceous (PEF) seedling functional type.
Macroinvertebrates Reveal Water Quality Differences in Various Agricultural Management Agung Sih Kurnianto; Rufaidah Nur Baiti; Hari Purnomo
Journal of Tropical Biodiversity and Biotechnology Vol 6, No 2 (2021): August
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.61507

Abstract

Monitoring benthic communities under different agricultural practices and management could potentially become an important tool to evaluate ecosystem health and stability. Benthic macroinvertebrates have been widely used as water quality bioindicators. This study aims to analyze macroinvertebrates in rice field ecosystems affected by three types of management practices, including conventional, semi-organic, and organic. This study was conducted in Sumberjambe and Kemiri, Jember Regency. Macroinvertebrate samples were collected at three sampling stations for each type of rice field, giving out a total of nine stations. Through Ekman grab, samples were obtained and transferred into a jam jar filled with 70% ethanol using a brush. Six ecological indices were selected to describe the diversity of each station. The Principal Component Analysis (PCA) using PAST3 software provided the sample's preference towards the stations and the higher taxa (Class). We also analyzed the similarity of the macroinvertebrate communities between the sampling stations using the Jaccard Similarity Index (JSI). A total of 11 families and 4 classes of macroinvertebrates are recorded. The Shannon-Wiener index shows high diversity for stations with organic management practices (1.318), while the Evenness index shows the highest value for conventional stations (0.9449). The Jaccard similarity index value reports two stations with semi-organic stations as well as semi-organic and organic stations having the highest similarity (JSI = 76.47%), while the lowest similarity value is characterized for conventional and organic stations (JSI = 13.19%).

Page 10 of 33 | Total Record : 327

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