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All Journal Bioma : Berkala Ilmiah Biologi Biota: Jurnal Ilmiah Ilmu-Ilmu Hayati Biogenesis: Jurnal Ilmiah Biologi Journal of Tropical Biodiversity and Biotechnology Genbinesia Journal of Biology
Donan Satria Yudha
Fakultas Biologi, Universitas Gadjah Mada
Agriculture, Biological Sciences & Forestry Biochemistry, Genetics & Molecular Biology Chemical Engineering, Chemistry & Bioengineering Education Environmental Science Health Professions Immunology & microbiology

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Keanekaragaman Jenis Ikan di Sepanjang Sungai Opak Propinsi Daerah Istimewa Yogyakarta, Indonesia Yudha, Donan Satria; Trijoko, Trijoko; Eprilurahman, Rury; Nugraha, Rizki; Suranto, Rosita Dwi Putri; Abida, Farahsani Umi; Tobing, Vega Felicia; Fathiya, Raden Firly; Nopitasari, Sri
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 5, No 2 (2020): June 2020
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v5i2.2939

Abstract

Penelitian mengenai keanekaragaman ikan air tawar di Sungai Opak DIY telah dilakukan dan dipublikasikan, tahun 2006, 2011 dan 2013. Data mengenai keanekaragaman ikan di Sungai Opak perlu dilakukan penambahan data, terutama data menyeluruh dari hulu hingga muara. Penambahan data perlu dilakukan, karena dimungkinkan ditemukan jenis ikan yang belum sempat tertangkap pada penelitian sebelumnya. Data jenis ikan yang tidak tertangkap pada penelitian sebelumnya, dapat menambah keanekaragaman jenis ikan di Sungai Opak. Penelitian ini bertujuan untuk melengkapi dan menambah data keanekaragaman jenis ikan yang terdapat di sepanjang Sungai Opak, dari hulu hingga muara. Pengambilan sampel dari hulu hingga muara menggunakan metode Purposive Random Sampling dengan bantuan jaring besar, kecil dan jala tebar. Sampling secara umum dibagi dalam empat bagian yaitu: hulu, tengah, hilir dan muara. Pada penelitian yang kami lakukan, terdapat beberapa jenis ikan yang tidak dijumpai pada penelitian sebelumnya, yaitu: lima jenis ikan dibagian hulu, di bagian tengah terdapat tiga jenis ikan yang tidak dijumpai pada penelitian sebelumnya, baik sampling hulu maupun hilir. Di bagian hilir dijumpai tujuh jenis ikan saat penelitian ini dan tidak dijumpai pada penelitian sebelumnya. Pada bagian muara, dijumpai lima belas jenis ikan yang tidak dijumpai di hilir pada penelitian sebelumnya. Total terdapat 28 jenis ikan yang dijumpai di tahun 2013 tetapi belum dijumpai di penelitian sebelumnya.
Sistematika Kongkang Jeram Huia masonii (Boulenger, 1884) Berdasarkan Karakter Morfologi Haekal, Muhammad; Hamidy, Amir; Yudha, Donan Satria; Eprilurahman, Rury
Bioma : Berkala Ilmiah Biologi Vol. 22, No 2, Tahun 2020
Publisher : Departemen Biologi, Fakultas Sains dan Matematika, Universitas Diponegoro

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14710/bioma.22.2.161-169

Abstract

Huia masonii (Boulenger, 1884) or Javan Torrent Frog is one of the frogs that are endemic on the island of Java. The presumption of two different forms of Huia's morphology according to Manthey and Dezer’s publication makes a systematic study of these species among their populations necessary. In this study, a systematic study of H.masonii was conducted between populations with a morphological approach to determine differences in character between populations, taxonomic status and phylogeny between populations. A total of 111 adult specimens (62 males and 49 females) from each population with good condition were observed morphologically. Data analysis was performed using Principal Component Analysis (PCA) and UPGMA Clustering. The results of this study indicate that there are no fundamental differences in the characteristics of each population so that there are no characters that can be used as diagnostic characters. The absence of this diagnostic character also makes the taxonomic status of H. masonii morphologically unchanged. Besides relationship between populations is still close to one another morphologically
Karakteristik Karapas dan Chela sebagai Alat Identifikasi Fosil Kepiting (Decapoda: Brachyura) yang ditemukan di Jawa Yudha, Donan Satria; Parama Putra, Krisogonus Yudha; Eprilurahman, Rury
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 6, No 1 (2021): February 2021
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v6i1.2480

Abstract

Kepiting infraordo Brachyura dikelompokkan ke dalam 53 familia yang tersebar di seluruh dunia. Di Indonesia dapat ditemukan 40 familia kepiting non air tawar dan tiga familia endemik kepiting air tawar, yaitu: Potamidae, Gecarcinudae, dan Parathelpusidae. Karapas dan capit (chela) merupakan bagian tubuh kepiting yang dapat digunakan untuk identifikasi taksonomi. Beberapa fragmen fosil kepiting yang dijumpai di Indonesia biasanya berupa bagian karapas dan capit. Panduan mengenai karakter morfologi karapas dan capit anggota infraordo Brachyura belum tersedia terutama untuk identifikasi fosil kepiting di Indonesia, sehingga perlu dikaji. Oleh karena itu, penelitian ini bertujuan untuk mengkaji karakter morfologi karapas dan capit sebagai karakter diagnostik kepiting sehingga dapat dimanfaatkan dalam identifikasi fosil kepiting. Spesimen yang diteliti adalah koleksi dari Laboratorium Sistematika Hewan Fakultas Biologi, Universitas Gadjah Mada. Metode yang digunakan yaitu komparasi morfologi dan karakteristik dari karapas dan capit serta studi referensi. Hasil penelitian menunjukkan bahwa karakter karapas dan capit, meliputi: bentuk karapas, ornamentasi karapas bagian lateral dan dorsal, salah satu capit membesar, tuberkula pada gigi capit, dan bentuk capit, dapat digunakan untuk mengidentifikasi jenis kepiting infraordo Brachyura dan dapat dijadikan referensi untuk identifikasi fragmen fosil kepiting yang dijumpai di Indonesia terutama di Pulau Jawa.
Monitoring Anurans Diversity along Code River, Province of Daerah Istimewa Yogyakarta, Indonesia Donan Satria Yudha; Wulan Rahmani Akmal; Rury Eprilurahman
Biogenesis: Jurnal Ilmiah Biologi Vol 7 No 2 (2019)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v7i2.10174

Abstract

The research about frogs and toads diversity in the Code River, Province of Daerah Istimewa Yogyakarta (DIY) had been done in 2012 (Yudha et al., 2013). Now, after five years passed, we conduct monitoring activities for updating its diversity and distribution. After five years, we consider that there are many changes along the river that influenced habitat condition for frogs and toads which live along and near the river. Some of the changes are unused land became human settlement or paddy fields and wasteland. The purpose of this research is to monitor the diversity of frogs and toads after five years along Code River. The method used was acoustic and visual encounter survey (VES). We have done total of 10 days of sampling. Each day we did two times sampling, during the day and night. Results show that the species number of frogs and toads found in 2012 were slightly higher compare to 2017. The frogs and toads on upstream part were diverse in 2017 compare to 2012 due to natural restoration of riparian vegetation occur on upstream. The frogs and toads on midstream part were less diverse in 2017 compared to 2012 due to increasing human activities near the river and less riparian vegetation. The frogs and toads on downstream part were also less diverse in 2017 compared to 2012 due to increasing human activities near the river and more household waste stuck on riparian vegetation. There was variation of anurans diversity after five years due to changing on physical condition of the river and human activities near the river.
Comparising DNA extraction from environmental DNA samples to reveal the diversity of freshwater metazoans Donan Satria Yudha; Dwi Sendi Priyono; Rahma Izzati; Aulia Sigit Ardianto; Ananto Puradi; Nainggolan Nainggolan
Biogenesis: Jurnal Ilmiah Biologi Vol 9 No 2 (2021)
Publisher : Department of Biology, Faculty of Sci and Tech, Universitas Islam Negeri Alauddin Makassar

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24252/bio.v9i2.24390

Abstract

Environmental DNA (eDNA) monitoring has gained popularity in the last decade as one of the most sensitive and cost-effective monitoring methods. However, information regarding the type of DNA extraction used still needs to be studied, especially for metazoan in fresh water samples. This parameter is also critical for a project's experimental design. This study aims to compare the effectiveness of two extraction kits between DNeasy® Blood & Tissue Kit (Qiagen) silica column-based and ZymoBIOMICS 96 MagBead DNA Kit (Zymo Research) magnetic bead-based. The quantity of DNA extracts was measured using a spectrophotometer at 260/280 nm. Following that, we continued the metazoa PCR procedure. Qiagen has higher mean value of DNA concentration (88.48 ng/μl) than Zymo (20.89 ng/μl). For DNA purity, Zymo has higher mean value of DNA purity (1.84) than the Qiagen (1.59). However, both kits were equally successful in amplifying universal metazoan primers. We recommend that the use of these types of kits appears to be the least important consideration. Other important factors that may have a major impact on DNA extraction such as water volume, membrane type, sampling strategy need to be investigated in freshwater samples.
Keanekaragaman Ular dan Kadal (Reptilia: Squamata) di Kawasan Karst Suaka Margasatwa Paliyan, Gunungkidul, Yogyakarta Donan Satria Yudha; Rury Eprilurahman; Iman Akbar Muhtianda; Hanan Asyrofi; Christian Manggala Yudha Pratama; Kusumardiastuti Kusumardiastuti; Wajudi Wajudi; Widodo Widodo
Biota : Jurnal Ilmiah Ilmu-Ilmu Hayati Vol 7, No 1 (2022): February 2022
Publisher : Universitas Atma Jaya Yogyakarta

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.24002/biota.v7i1.4404

Abstract

Kadal dan ular termasuk dalam hewan anggota bangsa Squamata, kelas Reptilia. Dua kelompok hewan reptil tersebut secara umum sering sekali ditemukan di dalam dan di sekitar kawasan hutan terutama yang memiliki sumber air. Bagi beberapa masyarakat, spesies ular dan kadal tersebut sering dimanfaatkan untuk dijadikan hewan peliharaan dan kadang dikonsumsi. Suaka Margasatwa Paliyan adalah kawasan hutan yang memiliki keanekaragaman spesies fauna yang perlu untuk diteliti. Kawasan dilindungi tersebut merupakan habitat bagi salah satu jenis cicak jenis baru yaitu Cyrtodactylus semiadii. Berdasarkan temuan tersebut perlu dilihat keanekaragaman spesies anggota reptil ordo Squamata di Kawasan Suaka Margasatwa Paliyan, Provinsi Daerah Istimewa Yogyakarta. Penelitian ini bertujuan untuk mengetahui keanekaragaman jenis reptil anggota ordo Squamata yang ada di wilayah Suaka Margasatwa Paliyan. Kawasan Suaka Margasatwa (SM) Paliyan merupakan habitat bagi 7 spesies kadal dan 6 spesies ular. Keanekaragaman kadal dan ular di SM Paliyan berdasarkan Indeks Shanon-Wiener (H’) dikategorikan “sedang”, dimana nilai indeks untuk Kadal dan Cicak (Lacertilia) adalah H’: 1,45, dan Ular (Serpentes) adalah H’:1,6. Wilayah SM Paliyan cocok bagi habitat kadal dan ular karena memiliki termasuk ke dalam hutan yang rindang dengan semak yang lebat, sungai-sungai dan telaga, serta area yang jarang dijadikan aktivitas manusia. 
Keanekaragaman Jenis Ikan di Sepanjang Sungai Boyong – Code Propinsi Daerah Istimewa Yogyakarta Tri Trijoko; Donan Satria Yudha; Rury Eprilurahman; Setiawan Silva Pambudi
Journal of Tropical Biodiversity and Biotechnology Vol 1, No 1 (2016): June
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | Full PDF (435.506 KB) | DOI: 10.22146/jtbb.12930

Abstract

The diversity of freshwater fishes which inhabit in the river of Daerah Istimewa Yogyakarta is not yet well documented. Complete documentation is needed as starting point and continuous research on the fish diversity in DIY. Boyong-Code River flows across the DIY, and it upstream is located on the hillside of Merapi volcano. The Code River upstream is called Boyong River. The research was aimed to acquire data about the diversity of fish fauna along the Boyong-Code River in the DIY. Further, the research purpose is to know which species are rare, potential for aquaculture, and introductive. Samples are taken along the Boyong-Code River starting from upstream to downstream. Samples were collected using Purposive Random Sampling methods with fishnets. Sampling area generally divided into three location i.e., upstream, middle-stream and downstream. Species diversity of fish in the Boyong-Code River is consisted of 24 species, with 5 introductive species. There are eleven native fish species which are potential for cultivation (aquaculture), i.e.: Barbodes binotatus, Mystacoleucus obtusirostris, Rasbora lateristriata, Rasbora argyrotaenia, Barbonymus balleroides, Osteochilus vittatus, Hampala macrolepidota, Anabas testudineus, Channa striata, Clarias leiacanthus and Clarias batrachus. The Boyong-Code River is a decent habitat for fishes. Many introduced fishes starting to invade the Boyong-Code River intentionally or unintentionally by human
The Diversity of Ray-finned Fishes (Actinopterygii) in Plio-Pleistocene Java Donan Satria Yudha; Muhammad Ageng Prabowo; Rusyad Adi Suriyanto; Didit Hadi Barianto
Journal of Tropical Biodiversity and Biotechnology Vol 5, No 2 (2020): August
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.43694

Abstract

Java has been known in the world of Paleontology as a contributor to the findings of Homo erectus fossils, but there are still other fossil findings that have not been identified until now, especially fossil fishes of the subclass Actinopterygii. This research was conducted to recognize the diversity of the actinopterygians fishes in Plio-Pleistocene of Java and to determine the diagnostic characters of each taxon group of fossils in the Plio-Pleistocene of Java. The study was carried out using comparative anatomical methods with present-day specimens and fossil findings collection of the Laboratory of Bioanthropology and Paleoanthropology, Faculty of Medicine, Public Health and Nursing, Universitas Gadjah Mada; Bandung Geological Museum and Sangiran Early Man Site. The research found at least 8 species of fish fossils in Java which belong to three order, i.e., the order Siluriformes with 5 identified species: Bagarius gigas, Hemibragus nemurus, Clarias macrocephalus, family Ariidae with indeterminate genus or species, Plotosus canius, Clarias batrachus, and family Pangasiidae with indeterminate genus or species; the order Perciformes with two identified species: Anabas testudineus and Sphyraena crassidens; and the order Cypriniformes with one identified species: Osteochilus vittatus. Based on the fossil findings showed that the Java Island during the Plio-Pleistocene used to be a marine environment that gradually ascending into a lowland river which closes to mangrove swamps and estuaries while the ancient Bandung lake site was a lacustrine environment with calm currents and is overgrown with riparian vegetation.
Antlers Characterization for Identification of Deer Species (Family Cervidae) in Indonesia Donan Satria Yudha; M Zulfiqar Meizar Pratama; Rury Eprilurahman
Journal of Tropical Biodiversity and Biotechnology Vol 4, No 3 (2019): Desember
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.45667

Abstract

There are five species of deer (family Cervidae) living in Indonesia today. Male deer possesses antlers, a unique character of male deer. Antlers have economic values for quite a long time. Antler’s growth is influenced by several factors, therefore each species of deer have its own unique antlers’ shape and size. Antler’s identification usually relies on size measurement and overall shape of complete antlers which still attach to the skull. It is difficult to identify shed, broken or individual antler. The purpose of the research is to understand antlers’ morphological characters on each species to become diagnostic characters. Specimens analysed were collections of LIPI and were analysed with Principal Component Analysis (PCA) using PAST3 software. The results showed each species of deer having their own unique antlers’ character, and so it can be used to determine the species of Indonesian deer. The important structures for identification are relief, pedicle, brow, bez, and main beam.
Characteristics of Shell Bone as an Identification Tool for Turtle Species (Reptiles: Testudines) in Java, Borneo, and Sumatra Donan Satria Yudha; Fidelis Triki Sadewa Aritona; Rury Eprilurahman
Journal of Tropical Biodiversity and Biotechnology Vol 5, No 1 (2020): April
Publisher : Universitas Gadjah Mada

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.22146/jtbb.47227

Abstract

There are 42 species of turtles; including sea turtle, freshwater turtle, tortoise, and softshell turtle (Reptilia: Testudines) living in Indonesia today. Turtles have economic values for quite a long time and it has led to illegal trade such as smuggling of carapace and plastron bones. Identification is needed to find out more details about the turtle species. Turtles have shells as unique features with different characteristics on each species. Shell’s identification usually relies on the shape of carapace and plastron. The purpose of this research is to understand turtle shell morphological characters and determine the diagnostic characters of each species. We conducted visual observation on specimen collections from the Laboratory of Animal Systematics, Faculty of Biology, Universitas Gadjah Mada and Museum of Biology, Faculty of Biology, Universitas Gadjah Mada. The result shows that each turtle species have their own unique shell bone’s characters, therefore it can be used to determine each turtle species of Indonesia.
Co-Authors Abida, Farahsani Umi Al Faqih, Muhamad Yusril Alfarizi, Muhammad Khevin Fathah Alfonsus Toribio Eko Saputro AMIR HAMIDY Ananto Puradi Ananto Puradi Nainggolan Andhika, Rashif Naufal Anggoro Putranto Asmaa’Anugerah Tarekat Aulia Sigit Ardianto Christian Manggala Yudha Pratama Dafa, Maula Haqul Desmi, Nola Dewi, Nur Indah Candra Didit Hadi Barianto Dwi Sendi Priyono Elika Boscha Erieco, Luthfi Fathiya, Raden Firly Fauzi, Luthfi Fidelis Triki Sadewa Aritona Haekal, Muhammad Hanan Asyrofi Hanik, Nureini Hastin Ambar Asti Herofi Azhar Imam Sujadi Iman Akbar Muhtianda Ismail, Rama Yudhistira Kusumardiastuti Kusumardiastuti M Zulfiqar Meizar Pratama Muhammad Ageng Prabowo Muhammad Faisal Alawi Nainggolan Nainggolan Nopitasari, Sri Nugraha, Rizki Nurrochmah Wisudhaningrum Parama Putra, Krisogonus Yudha Pranatami, Kinanti Ayurahmawati Priyono, Dwi Sendi Puji Lestari Putra, Rachmat Aditama Dwija Putri, Rahmi Ramadhani Rahino, Wintang Gagat Bangun Rahma Izzati Raihan, Ananta Widi Rury Eprilurahman Rury Erilurahman Rusyad Adi Suriyanto Salsabila, Sophia Setiawan Silva Pambudi Siti Markhamah Sulistio, Adian Dwi Suranto, Rosita Dwi Putri Tobing, Vega Felicia Tri Trijoko Trijoko Trijoko Trijoko Trijoko Wajudi Wajudi Widodo Widodo Wulan Rahmani Akmal