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All Journal Journal of Tropical Life Science : International Journal of Theoretical, Experimental, and Applied Life Sciences Bioma : Berkala Ilmiah Biologi The Journal of Experimental Life Sciences (JELS) Journal of Tropical Biodiversity and Biotechnology BERITA BIOLOGI JURNAL BIOLOGI INDONESIA ZOO INDONESIA Jurnal Biodjati Biosaintifika: Journal of Biology & Biology Education Patrawidya: Seri Penerbitan Penelitian Sejarah dan Budaya Zoo Indonesia

AMIR HAMIDY

Bidang Zoologi Pusat Penelitian Biologi-Lembaga Ilmu Pengetahuan Indonesia, Bogor

Author-ID : 273589

Agriculture, Biological Sciences & Forestry Arts Biochemistry, Genetics & Molecular Biology Earth & Planetary Sciences Education Environmental Science Immunology & microbiology Medicine & Pharmacology Neuroscience Social Sciences Other

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Variasi Suara Panggilan Kodok Hylarana nicobariensis (Stoliczka, 1870) Dari Lima Populasi Berbeda di Indonesia (Anura: Ranidae) Kurniati, Hellen; Hamidy, Amir
JURNAL BIOLOGI INDONESIA Vol 12, No 2 (2016): JURNAL BIOLOGI INDONESIA
Publisher : Perhimpunan Biologi Indonesia

Hylarana nicobariensis (Stoliczka, 1870) is a very common frog, which has a wide distribution, covering the southern part of Thailand, Peninsular Malaysia, Sumatra, Borneo, Java, Bali and Palawan in the Philippines. The presence of this frog is very easy to be recognized by listening its shrill call that is sounded loudly all day. Detailed descriptions of H. nicobariensisâs calls from Ulu Gombak in Peninsular Malaysia and Danum Valley in Sarawak have been published by Jehle and Arak (1998), which are some call characters of the frog from the two locations are significantly different. To determine the call characters that can distinguish among populations of this frog, advertisement calls of five different populations (Batukaru, Curup, Limau Manis, Curug Nangka and Lake Ecology Park) were analyzed. The characters of the call waves on the five populations are different in the structure of sub-pulses, dominant frequency and lower frequency. Among the five populations, the population from Lake Ecology Park is the most different in the terms of the dominant frequency (3996.95 Â± 124.74 Hz) and lower frequency (1692.51 Â± 80.77 Hz), of this population both these characters occupy the highest level compared to four other populations; however individuals from Curup occupy the lowest level on dominant frequency (2919.67 Â± 67.76 Hz) and lower frequency (832.96 Â± 32.42 Hz).Key words: Ranidae, Hylarana nicobariensis, bioacoustics

Karakteristik Suara Kelompok Kodok Microhylidae Bertubuh Kecil Asdal Bali (Anura: Microhylidae) Kurniati, Hellen; Hamidy, Amir
JURNAL BIOLOGI INDONESIA Vol 10, No 2 (2014): Jurnal Biologi Indonesia
Publisher : Perhimpunan Biologi Indonesia

Advertisement calls of Microhyla palmipes and Oreophryne monticola have never been described before; howevercharacteristics of M. orientalisÃ¢â¬â¢s calls has been described just to support new species publication. The advertisement calls oftwo individual males of M. orientalis and M. palmipes which originated from Wongaya Gede, Bali were recorded in July2010 at air temperatures of 26.0ÃÂ°C. Three individuals males of O. monticola were recorded in Eka Karya Botanical Garden,Bali at air temperature of 25.0ÃÂ°C. Call components were obtained from 65 calls of M. orientalis, consisting of 95 pulses; 10calls of M. palmipes, consisting of 113 pulses; 3 calls of O. monticola, consisting of 127 pulses, which were then analyzed toobtain the characteristics of sound waves by using software of Adobe Audition 3.0. Sound waves of M. orientalis mainlyconsists of two dominant frequencies raging from 1873-2062 Hz and 3375-3562 Hz; however sound waves of M. palmipesand O. monticola mainly consist of only one dominant frequency that ranges of the frequency is the same, i.e. 3000-3937Hz. Although M. palmipes and O. monticola have the same range on dominant frequency, but the two species have significantlydifferent on number of period per pulse, pulse duration, pulse interval, pulse period, call duration and call interval.Key words: frog call, Microhylidae, Bali Island

VARIASI DAN DEGRADASI SUARA PANGGILAN KODOK JANGKRIK [HYLARANA NICOBARIENSIS (STOLICZKA, 1870)] ASAL PULAU ENGGANO (ANURA: RANIDAE) [Variation and degradation on advertisement calls of Cricket Frog, Hylarana nicobariensis (Stoliczka, 1870) from Enggano Island] Kurniati, Hellen; Hamidy, Amir
BERITA BIOLOGI Vol 15, No 3 (2016)
Publisher : Research Center for Biology-Indonesian Institute of Sciences

Frogâs group of Hylarana nicobariensis (Stoliczka, 1870) is a complex species that has diverse genetic populations and variations on advertisement calls. Variations on advertisement calls among populations have been reported in Sumatra, Java and Bali. The population of frog in Enggano has different phenomenon that was not found in Sumatra and Java. Â Enggano population was genetically identical, but the advertisement calls were very diverse. There were four types of advertisement calls on the population in Enggano Island, namely: (1) advertisement call type 1 which has pulse wave with the dominant frequency of 2855.13 Â± 135.22 Hertz; (2) advertisement call type 2 which has pure tone wave with the dominant frequency of 2720.29 Â± 97.69 Hertz; (3) advertisement call type 3 which has pulse wave with dominant frequency 2634.61 Â± 292.81 Hertz; (4) advertisement call type 4 which has pure tone wave with dominant frequency 1618.79 Â± 83.05 Hertz. The degradation of the dominant frequency and the lower frequency was likely due to the increase of snout to vent length (SVL) of adult male that were followed by increasing the size of the head.

Hubungan Filogenetik Phrynella pulchra Boulenger, 1887 Berdasarkan Gen 16S rRNA Akhsani, Farid; Hamidy, Amir; Farajallah, Achmad; Smith, Eric N.
ZOO INDONESIA Vol 26, No 2 (2017): Desember 2017
Publisher : Masyarakat Zoologi Indonesia

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Phrynella merupakan marga monotipik yang sejauh ini hanya terdiri dari satu jenis, yakni Phrynella pulchra. Jenis ini terdistribusi di Semenanjung Malaysia, Sumatra dan Pulau Mentawai. Kami mengevaluasi status taksonomi populasi yang berasal dari Sumatra menggunakan data sekuen dari gen 16S rRNA mitokondria. Hubungan filogenetik dianalisis menggunakan Neighbour Joining (NJ), Maximum Likelihood (ML), Bayesian Inference Analisys (BI) dan Unweighted Pair Group Method with Arithmetic Means (UPGMA). Hasil penelitian menunjukkan bahwa P. pulchra adalah kelompok monofiletik terhadap anggota luar (Metaphrynella, Kaloula dan Micryletta). Kelompok monofiletik P. pulchra terbagi menjadi dua kelompok besar: Sumatra dan Semenanjung Malaysia. Kelompok Sumatra terdiri dari dua subkelompok: Aceh dan Sumatra Utara- Bengkulu. Jarak genetik (uncorrected p-distance) antara populasi Semenanjung Malaysia dan Sumatra berkisar antara 1,1 sampai 2,0%, sedangkan di dalam populasi Sumatra berkisar antara 0,0 sampai 1,1%. Rendahnya jarak genetik populasi Semenanjung Malaysia dengan Sumatra secara taksonomi menunjukkan populasi tersebut masih berada pada tingkat Jenis yang sama.

Identifikasi Molekuler Microhyla, Tschudi 1839 dari Sumatera Berdasarkan Gen 16S rRNA Pradana, Tengku Gilang; Hamidy, Amir; Farajallah, Achmad; Smith, Eric N.
ZOO INDONESIA Vol 26, No 2 (2017): Desember 2017
Publisher : Masyarakat Zoologi Indonesia

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Penelitian ini bertujuan mengevaluasi posisi jenis Microhyla dari Sumatra berdasarkan sekuen data dari gen 16S rRNA di dalam pohon filogeni Microhyla secara umum. Pohon filogeni dihasilkan dengan menggunakan analisis Unweighted Pair Group Method with Aritmatic Means (UPGMA), Neighbor Joining (NJ), Maximum Likelihood (ML) dan Bayesian Inference (BI). Kami menggunakan Phrynella pulchra, Kaloula pulchra, Kalophrynus pleurostigma, Chalcorana chal-conota, dan Leptobrachium waysepuntiense sebagai anggota outgroup. Hasil pohon filogeni menunjukkan bahwa Micro-hyla terdiri dari sembilan kelompok utama, enam diantaranya merupakan Microhyla dari Sumatra. Microhyla dari Su-matra mengelompok dengan M. achatina, kelompok M. heymonsi, kelompok M. fissipes, kelompok M. palmipes, kelompok M. berdmorei dan kelompok M. superciliaris. Beberapa kelompok memiliki jarak genetik yang besar seperti pada M. achatina (3,1−3,4%), M. heymonsi (3,3−7,1%) dan M. palmipes (2,5−3,4%). Microhyla fissipes membentuk parafiletik dengan M. mukhlesuri, kemungkinan termasuk kedalam complex atau cryptic spesies. Hal ini membutuhkan kajian lebih lanjut secara morfologi dan suara guna menentukan status taksonomi dari masing masing populasi di dalam jenis-jenis tersebut.

Karakter Suara Limnonectes modestus (Boulenger, 1882) Asal Suaka Margasatwa Nantu, Gorontalo, Sulawesi Bagian Utara Kurniati, Hellen; Hamidy, Amir
JURNAL BIOLOGI INDONESIA Vol 14, No 2 (2018): JURNAL BIOLOGI INDONESIA
Publisher : Perhimpunan Biologi Indonesia

ABSTRACTCall characteristics of Limnonectes modestus (Boulenger, 1882) which is endemic to Sulawesi have never been described before. The advertisement calls of two individual males collected from Nantu Wildlife Sanctuary, Gorontalo, northern Sulawesi were recorded in December 6, 2014 at air temperatures of 26°C. Adobe Audition 3.0 software was used to visualize sound waves. Advertisement call of L. modestus is very simple, which only has one type of call containing 1-6 pulses. Pulse duration, pulse rate and call rate of the two individual males are very diverse, ranged between 21-56 milli seconds, 2.58 to 7.87 pulses/second and 0.09-1.16 call/second; but the frequency variation of call is very low, the lower frequency range between 515.6 to 593.0 Hertz (CV=3.1%), whereas the upper frequency range between 2179.0 to 2859.0 Hertz (CV=5.4%); the band width of the frequency range between 1616.5 to 2320.0 Hertz (CV=7.1%). Key words: vocalization, Limnonectes modestus, Nantu Wildlife Sanctuary, North Sulawesi

Variasi Karakter Morfologi Cyrtodactylus marmoratus Gray, 1831 (Reptilia: Squamata: Gekkonidae) dari Pulau Jawa Wiradarma, Huda; Baskoro, Karyadi; Hadi, Mochamad; Hamidy, Amir; Riyanto, Awal
Bioma : Berkala Ilmiah Biologi Vol. 21, No 2, Tahun 2019
Publisher : Departemen Biologi, Fakultas Sains dan Matematika, Universitas Diponegoro

Cyrtodactylus marmoratus is one of the first species described by Gray in 1831 on the island of Java that believed to have a variation of morphologic characters that not yet complete to revealed. This research aimed to develop any variation characters possessed by Cyrtodactylus marmoratus. The character morphology, morphometric, and meristic follow the statement of Hartmann (2016). Data were collected in August to November in the Lab. Herpetology MZB (Museum Zoologicum Bogoriense) LIPI (The Indonesian Institute of Sciences). Variation characters possessedÂ by Cyrtodactylus marmoratus, there are 4 Characters Morphology: Head Morph (HM), Patern Morph on the Body (PtrM), Post Cloacal Tubercles (PCT), and second post mental (PM2); a Morphometry Characters is snout-vent Length (SVL); and 12 characters Meristic are: Precloacal Pores (PP), Precloaco-femoral Pores (PFP), Enlarged Precloaco-femoral Scales (EPFS), Ventral Scales (VS), Paravertebral Tubercles (PVT), Dorsal Tubercles (DTR), Lamella Under Toe-IV (LT4), Lamella Under Toe-V (LT5), Lamella Under Finger-III (LF3), Lamella Finger-IV (LF4), Femoral Pores Left (FPL), Femoral Pores Right (FPR).

MORPHOLOGICAL VARIATION OF MALAYOPYTHON RETICULATUS (SCHNEIDER, 1801) FROM SEVERAL POPULATION IN INDONESIA Septiadi, Luhur; Fathoni, M; Hanifa, Berry Fakhry; Hamidy, Amir
Journal of Tropical Life Science Vol 9, No 3 (2019)
Publisher : Journal of Tropical Life Science

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Reticulated python (Malayopython reticulatus) is a widely distributed snake covering throughout Southeast Asia and almost all of Indonesia archipelago and divided into several subspecies based on morphological variation and its locality. Morphological variation data of M. reticulatus from Indonesia population has never been done thoroughly. This study aims to determine the morphological variations based on 21 meristic and 3 morphometric characters from several populations in Indonesia. The data was collected from the Museum Zoologicum Bogoriense (MZB) Cibinong, Indonesia and other additional collections that are carried out from June to July 2018 and then analyzed by Principal Component Analysis (PCA) to determine the population grouping. The result showed a high variation on the scale range of anterior prefrontal, posterior prefrontal, frontal, parietal, preocular, postocular, loreal, temporal, upper labial, lower labial, and dorsal scales. Ventral and subcaudal scales in male and female specimens show high variation in the total scale count, the ratio comparison of tl: SVL measurement, indicated the sexual dimorphism. Prefrontal (anterior-posterior) and frontal scales show high variation and difficult to distinguish between each locality at the subspecies level and suggest it to be intra-specific variation. There is no significant grouping were found between populations from data on morphological variations.

VARIASI SUARA PANGGILAN KODOK HYLARANA NICOBARIENSIS (STOLICZKA, 1870) DARI LIMA POPULASI BERBEDA DI INDONESIA (ANURA: RANIDAE) Kurniati, Hellen; Hamidy, Amir
JURNAL BIOLOGI INDONESIA Vol 12, No 2 (2016): JURNAL BIOLOGI INDONESIA
Publisher : Perhimpunan Biologi Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/jbi.v12i2.2877

Hylarana nicobariensis (Stoliczka, 1870) is a very common frog, which has a wide distribution, covering the southern part of Thailand, Peninsular Malaysia, Sumatra, Borneo, Java, Bali and Palawan in the Philippines. The presence of this frog is very easy to be recognized by listening its shrill call that is sounded loudly all day. Detailed descriptions of H. nicobariensis?s calls from Ulu Gombak in Peninsular Malaysia and Danum Valley in Sarawak have been published by Jehle and Arak (1998), which are some call characters of the frog from the two locations are significantly different. To determine the call characters that can distinguish among populations of this frog, advertisement calls of five different populations (Batukaru, Curup, Limau Manis, Curug Nangka and Lake Ecology Park) were analyzed. The characters of the call waves on the five populations are different in the structure of sub-pulses, dominant frequency and lower frequency. Among the five populations, the population from Lake Ecology Park is the most different in the terms of the dominant frequency (3996.95 ± 124.74 Hz) and lower frequency (1692.51 ± 80.77 Hz), of this population both these characters occupy the highest level compared to four other populations; however individuals from Curup occupy the lowest level on dominant frequency (2919.67 ± 67.76 Hz) and lower frequency (832.96 ± 32.42 Hz).Key words: Ranidae, Hylarana nicobariensis, bioacoustics

KARAKTERISTIK SUARA KELOMPOK KODOK MICROHYLIDAE BERTUBUH KECIL ASDAL BALI (ANURA: MICROHYLIDAE) Kurniati, Hellen; Hamidy, Amir
JURNAL BIOLOGI INDONESIA Vol 10, No 2 (2014): Jurnal Biologi Indonesia
Publisher : Perhimpunan Biologi Indonesia

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.14203/jbi.v10i2.2099

Advertisement calls of Microhyla palmipes and Oreophryne monticola have never been described before; howevercharacteristics of M. orientalisâ??s calls has been described just to support new species publication. The advertisement calls oftwo individual males of M. orientalis and M. palmipes which originated from Wongaya Gede, Bali were recorded in July2010 at air temperatures of 26.0Â°C. Three individuals males of O. monticola were recorded in Eka Karya Botanical Garden,Bali at air temperature of 25.0Â°C. Call components were obtained from 65 calls of M. orientalis, consisting of 95 pulses; 10calls of M. palmipes, consisting of 113 pulses; 3 calls of O. monticola, consisting of 127 pulses, which were then analyzed toobtain the characteristics of sound waves by using software of Adobe Audition 3.0. Sound waves of M. orientalis mainlyconsists of two dominant frequencies raging from 1873-2062 Hz and 3375-3562 Hz; however sound waves of M. palmipesand O. monticola mainly consist of only one dominant frequency that ranges of the frequency is the same, i.e. 3000-3937Hz. Although M. palmipes and O. monticola have the same range on dominant frequency, but the two species have significantlydifferent on number of period per pulse, pulse duration, pulse interval, pulse period, call duration and call interval.Key words: frog call, Microhylidae, Bali Island

Co-Authors ACHMAD FARAJALLAH Ahmad Muammar Kadafi Aji, Katon Waskito Andri Maulidi Ardiantoro, Ari Arroyyan, Ahmad Nauval Atmaja, Vestidhia Yunisya Bagus Priambodo Bambang Agus Suripto Berry Fakhry Hanifa Djong Hon Tjong Donan Satria Yudha Endarwin, Wempi Fahmi, Muhamad Farid Akhsani fatchiyah . Fathoni, M Faturahman, Ahmad Nabil Fauzan, Muhammad Fakhri Fauzi, Luthfi Fauzi, Muhammad Alif Firdaus, Anggun Sausan Fitriyana, Nurul GONO SEMIADI Haekal, Muhammad Hellen Kurniati, Hellen Herlambang, Alamsyah E. N. Idrus, Meilinda Rodhiya Karyadi Baskoro Laksono, Wahyu Tri Mahmudul Hasan, Mahmudul Margareta Rahayuningsih Nugroho Edi K Masayuki Sumida, Masayuki Matsui, Masafumi Matsui, Masafumi Mediyansyah Mediyansyah Misbahul Munir Mochamad Hadi Mumpuni Mumpuni Ni Luh Putu Rischa Phadmacanty Nia Kurniawan Pradana, Tengku Gilang Riyanto, Awal Rury Eprilurahman Saiful Bahri Septiadi, Luhur Smith, Eric N. Smith, Eric N. Smith, Eric Nelson Takeshi Igawa, Takeshi Tesri Maideliza Tuty Arisuryanti, Tuty Vera Budi Lestari Sihotang, Vera Budi Lestari Wahyu Prihatini Winda Rahmawati Wiradarma, Huda Zakky, Quraisy

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