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All Journal Bulletin of Electrical Engineering and Informatics Jurnal Pengembangan Teknologi Informasi dan Ilmu Komputer Knowledge Engineering and Data Science
Agus Wahyu Widodo
Fakultas Ilmu Komputer, Universitas Brawijaya
Computer Science & IT Control & Systems Engineering Education Electrical & Electronics Engineering Engineering

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Journal : Bulletin of Electrical Engineering and Informatics

 1 
Profiling DNA Sequence of SARS-Cov-2 Virus Using Machine Learning Algorithm Lailil Muflikhah; Muh. Arif Rahman; Agus Wahyu Widodo
Bulletin of Electrical Engineering and Informatics Vol 11, No 2: April 2022
Publisher : Institute of Advanced Engineering and Science

Show Abstract | Download Original | Original Source | Check in Google Scholar | DOI: 10.11591/eei.v11i2.3487

Abstract

Corona virus disease-19 (COVID-19) is growing rapidly because it is an infectious disease. This disease is caused by a virus belonging to the type of DNA virus with very diverse genetics. This study proposes a feature extraction method using k-mer to obtain nucleotide frequencies in protein coding. In profiling viral DNA sequences, this study proposes to obtain similarity by country using hierarchical k-means, where the results are averaged by the hierarchical clustering method and then find the initial cluster center. The experimental results show that the silhouette, purity, and entropy are 0.867, 0.208, and 0.892, respectively. Then, we apply the Gini index feature selection to find the important components as characteristics in each country. The selected components are implemented using the ensemble method, Random Forest, to evaluate their performance. The experimental results showed high performance, including sensitivity, accuracy, specificity, and area under the curve (AUC).
Co-Authors Achmad Arwan Achmad Dewanto Aji Wibisono Adam Hendra Brata Adinugroho, Sigit Afrida Djulya Ika Pratiwi Aida Fitri Nur Amrina Ainun Najib Eka Christianto Aisha Laras Akmilatul Maghfiroh Al-Mar'atush Shoolihah Allifira Andara Hasna Ana Mariyam Puspitasari Andika Indra Kusuma Andreas Pardede Angelika Trivena Lodong Anggita Nurfadilla Mahardika Annisa Amalia Nur'aini Anto Satriyo Nugroho Ardiansyah Setiajati Arry Supriyanto Arya Agung Andika Aryu Hanifah Aji Asfie Nurjanah Ayu Anggrestianingsih Ayudiya Pramisti Regitha Ayustina Giusti Azizah Nurul Asri Bagas Laksono Bayu Rahayudi Beryl Labique Ahmadie Budi Darma Setiawan Budi Kurniawan Cahya Chaqiqi Candra Dewi Dani Devito Delischa Novia Sabilla Deo Hernando Dian Eka Ratnawati Diantarakita Diantarakita Dwi Retnoningrum Dyan Putri Mahardika Eko Wahyu Hidayat Erlyan Eka Pratiwi Faizatul Amalia Fajar Pangestu Fajar Pradana Fajri Eka Saputra Farizky Novanda Pramuditya Femilia Nopianti Feris Adi Kurnia Sadiva Fitri Dwi Astuti Fransiskus Cahyadi Putra Pranoto Grace Theresia Situmorang Gusti Ngurah Wisnu Paramartha Hafid Satrio Priambodo Hardyan Zalfi Haris Bahtiar Asidik Harits Abdurrohman Herman Tolle Imam Cholissodin Indriati Indriati Irwan Shofwan Javier Ardra Figo Jefri Hendra Prasetyo Kholifa'ul Khoirin Lailil Muflikhah Latifa Nabila Harfiya Laviana Agata M. Ali Fauzi Maharani Tri Hastuti Maria Sartika Tambun Miftahul Arifin Muh Arif Rahman Muh. Arif Rahman Muh. Arif Rahman Muh. Ihsan As Sauri Muhamad Rendra Husein Roisdiansyah Muhammad Dimas Setiawan Sanapiah Muhammad Fahmi Hidayatullah Muhammad Fahmi Wibawa Muhammad Faiz Abdul Hamif Muhammad Fajriansyah Muhammad Heryan Chaniago Muhammad Ikhsan Nur Muhammad Rafi Farhan Muhammad Tanzil Furqon Muhja Mufidah Afaf Amirah Nabilla Putri Sakinah Nanda Dwi Putra Miskarana Ade Natassa Anastasya Naufal Sakagraha Kuspinta Nelli Nur Rahma Ni'mah Firsta Cahya Susilo Ningsih Puji Rahayu Nizar Riftadhi Prabandaru Novanto Yudistira Nur Afifah Sugianto Nur Faiqoh Laely Ambarwati Nur Firra Hasjidla Nur Kholida Afkarina Nurudin Santoso Nurul Hidayat oktiyas muzaky Luthfi, oktiyas muzaky Olive Khoirul L.M.A. Puteri Aulia Indrasti Putra Pandu Adikara Putri Bunga Rahmalita Putu Satya Cahyani Rahma Juwita Sany Randy Cahya Wihandika Rekyan Regasari Mardhi Putri Rekyan Regasari Mardi Putri, Rekyan Regasari Mardi Restu Widodo Resya Futri Hadi Febryana Retno Dewi Anissa Revan Yosua Cornelius Sianturi Ridho Saputra Rinindya Nurtiara Puteri Rizka Husnun Zakiyyah Rizki Aziz Amanullah Rosi Afiqo Rr Dea Annisayanti Putri Ryan Iriany Satria Habiburrahman Fathul Hakim Sayyidah Karimah Sindy Erika Br Ginting Sri Rahadian Ramadhan Sakti Susiawan Hastomo Ajie Talitha Raissa Tusiarti Handayani Tusty Nadia Maghfira Umar Zaki Izzuddin Utaminingrum, Fitri Vriza Wahyu Saputra Wayan Firdaus Mahmudy Wayan Firdaus Mahmudy Wenny Ramadha Putri Willy Karunia Sandy Winda Cahyaningrum Winda Ika Praseptiyana Witriana Sumarni Yane Marita Febrianti Yosafat Vincent Saragih Yuita Arum Sari Yunita Kristanti Emilia